Latimeria chalumnae (coelacanth): 102358812
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Entry
102358812 CDS
T02913
Symbol
BRIP1
Name
(RefSeq) BRCA1 interacting protein C-terminal helicase 1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
lcm
Latimeria chalumnae (coelacanth)
Pathway
lcm03440
Homologous recombination
lcm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102358812 (BRIP1)
03460 Fanconi anemia pathway
102358812 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcm03400
]
102358812 (BRIP1)
Enzymes [BR:
lcm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102358812 (BRIP1)
DNA repair and recombination proteins [BR:
lcm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
102358812 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
102358812 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
102358812
NCBI-ProteinID:
XP_005986875
LinkDB
All DBs
Position
Un
AA seq
1312 aa
AA seq
DB search
MSTTSSEYTVGGVKIIFPFKAYPCQLAMMNSIIRGLKSQQHCLLESPTGSGKSLALLCSA
LAWQQSAYDKQVDVGTGEDDCKKKENVPPCHCKCHEAKVPPCNTTEQAGPSALNCQTAPS
SNKLSPAGNKGGAEDYPLQKKTIASKLSAKMQACFAEGEDDFQSDKKRICALANKVSARK
RRCLEKGVQFIDDEPVMDAGGAGQQDWKMELNSEATQSSSYIAQEQSPSPCIQCSCATEK
LKGKESNSVKGKENGEKQQVPKIFFGTRTHKQIAQIARELRRTVYSGVRMTILSSRDHTC
VHPQVSRSGNRNERCKELLDAKDGSSCRYYHGVQKLSEQRVIQRLYGLHHAWDIEELVAL
GKKLHACAYFAARELMQDADIVFCPYNYLLDPQIRESMDINLKGQVVILDEAHNIEDCAR
ESASFSVTHAQLMFAREELDSMVNHDIRRSNHEPLRAVCYSLTNWIMESSNSLVEQGYET
SSRVWSGKDMVAIFHNMGITSATFSILKRHLAIVTEKEEKTTMLSGREEVLQIPTISSPS
QIVLKGLFMVMEFLFRDDSRFANDYRVALQQTYTWVNRPDVPDQSGFFTRPSNRRSVRQK
TAVHMLNFWCLNPAVAFSDLSSSSRTIVLTSGTLSPMESFSSELGVKFTIQLEANHVVTK
SQVWVGTIGSGPKGRKLCATFEHTETFEFQDEVGALLQSICQAISCGVLCFLPSYKMLDK
LRDRWMHTGLWNKLEEIKTVITEPQGGDKTDFDGLLQLYYNAIKHKDGALLIAVYRGKVS
EGLDFSDDNARAVVTIGVPFPNIKNLQVDLKRKYNDQHSKTRGLLPGNQWYEIQAFRALN
QALGRCIRHKNDWGALILVDDRFRSNPNKYITRLSKWVRNQVQHHTDFKSALESLGVFAK
GRQEGISSLPQCRTSPTLHGQASVMNTSPLSPPLETSHQQLTETTVEAESGTSIHDLSSP
CVGITSSLTDSKAANLTDNNIMKYDRTPSKEVHTPSVKTESFASCSRSSTSKVQKAKVVS
STIDQYFRPKPLTSTPIPVKQGSAVPGFIEESSDVRIHPSAVNGCQRLLPIANLSFEIEK
QDETASKENQSSIAVPVELSRTDQDKDQGTLCKSQVNVFAKPQVKIELSPVEEPVVNGDL
TLADISVLQNSDEGEDSDEDETFFFTPELFESEQDADAETLTREDLTAVEAVQNNANDFI
FKFQNSSEMLVQYKEHCGYTSYKSVDLVKSAVINDASNTHRDLNTEGKTMVNANGPNTRN
QLADEVEQSCLGETKRNKLSRSRNKGVSCIVTHSSSSQCTDKESEATKNAGD
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactacttcatcggagtacactgtaggtggggtgaagattatcttccccttcaag
gcctatccctgtcagcttgccatgatgaattctattattcggggtctaaagagccagcag
cactgtttgttggagagccctacaggaagtgggaaaagcttagccctcctctgttctgcg
ttggcctggcaacagtctgcatatgataaacaagtagatgtcggtactggtgaggatgac
tgtaagaagaaagaaaatgtcccaccttgtcactgcaagtgccatgaagcgaaagttcct
ccttgtaacactacagagcaggccggtccgtcagcactgaactgtcaaacagcaccaagt
tcaaataagctgtcaccagctggaaataaaggtggtgctgaagattatcctctgcaaaag
aagacaattgcttccaagttatcagcaaagatgcaggcctgtttcgcagaaggcgaggat
gattttcaatcagacaagaaaaggatatgcgcattggcaaacaaagtgtcggctagaaaa
cggcgttgtctggagaaaggtgtgcagttcatcgacgatgagcctgtaatggatgcaggt
ggcgctggacagcaggattggaaaatggagctgaactcagaagctacacaaagctcttcc
tatatagcacaagaacagtctcccagtccttgtattcaatgttcctgtgccactgaaaag
ttaaaaggaaaagagtccaatagcgtaaaggggaaggaaaatggagagaagcaacaagtc
cctaaaatcttctttggaacccggacgcacaagcaaatagctcagattgcccgggagctg
cgtaggacagtatattctggtgtccggatgactattctgtcgagcagggatcacacttgt
gtccatccacaggtctcacgctctggcaacaggaacgaacgttgcaaagagctgctcgac
gcaaaagatgggagttcctgtcgctactaccatggggtccagaaattaagcgagcagcgt
gtaattcagaggctatatggactgcaccatgcctgggacattgaagagctggtggcactg
ggaaaaaaattacatgcatgcgcatattttgcagcaagggagctgatgcaggatgctgac
attgtattctgtccctataattatcttctggacccacaaatccgagagagcatggacatt
aacctaaaaggccaggtggtcatcctagatgaagcccataacatagaggactgtgcacgg
gagtcggccagtttcagtgttactcacgctcagttgatgtttgctcgagaggagctggat
agtatggtcaaccacgacatcaggcgtagcaaccatgagcctctgcgagctgtctgttac
agtcttaccaattggattatggaaagctctaatagtttggtggagcagggatatgaaaca
tcctctagagtttggagtggaaaagacatggtagctatttttcacaacatgggaataact
agtgccaccttttctatattaaagaggcatcttgctattgtgactgaaaaagaagagaaa
acaacaatgctgagtggcagagaggaggtcctacaaatccccactatcagctctccgtca
cagattgtgctgaaaggactctttatggtgatggaatttctctttagggatgacagcaga
tttgcaaatgattacagagtggctttacagcaaacatacacctgggttaatcggcctgat
gttcctgatcaaagtgggtttttcacccgtccgagcaacaggagaagtgttcgccagaaa
actgctgttcacatgctcaacttctggtgtctaaatcctgctgtggccttttcagatttg
agtagtagttctaggaccattgtactgacatctggtactctctccccaatggaatccttt
tcatctgaacttggtgtgaaatttacaatccaactggaggcgaatcatgttgttactaaa
tcacaggtctgggttggcactattggtagtggccccaagggtcgtaaactttgtgctaca
ttcgagcatacagagacctttgagttccaggatgaggtgggagcacttctgcagtccatc
tgccaggccattagctgtggagtcttgtgctttttaccttcctacaagatgttggacaaa
ttaagagaccgttggatgcacactggattatggaacaagctggaagagattaagacggtc
atcacggaaccacaaggaggggacaaaactgactttgatggcttgttgcaattgtattat
aatgcaattaaacacaaagatggagccctgctgatagcagtatacagaggcaaagtcagt
gaaggtttggatttctcggatgacaacgctcgtgctgtggtgaccattggagttccgttt
ccaaacattaaaaatcttcaggttgatttaaagcgaaaatacaatgaccagcactcaaag
actcgaggcctgttaccaggcaatcagtggtatgagattcaggctttcagagctctcaat
caagcactgggcaggtgcattcggcataaaaatgattggggagcacttattttagtcgat
gatcggtttaggagtaatcctaataaatatataacaagattatcaaaatgggtccgcaac
caggttcaacatcatacagattttaaaagtgctttagagtctttgggtgtatttgctaaa
ggaagacaagaaggcattagttctctgccccagtgtaggactagtcctaccctgcatgga
caagcaagtgtgatgaacacttcaccactttctccaccactagagaccagtcatcagcag
ttaacggagaccactgttgaagctgaatcaggcacttctattcatgatttgtcatctcct
tgtgttggtataacaagcagtttgactgactctaaagctgctaatctgacagacaacaac
attatgaaatatgatcggacacccagtaaagaagttcacacaccttcggtcaaaactgaa
tcgtttgcttcatgctccagaagttctaccagtaaggttcagaaagccaaggtggtctca
agcaccatcgatcaatactttagacctaaacccctgacctcaacacctatacctgtgaag
caaggttctgcagtgcctggttttattgaagagtctagtgatgttcgtatccatccgtcg
gctgtcaatggatgccagagacttttgccaatagcaaatctgtcatttgaaattgaaaaa
caagatgaaaccgcttcaaaggaaaatcagtccagtattgctgttcctgtagagttgtca
cgaacagaccaagataaagaccaaggtactctatgtaaaagtcaggttaatgtatttgca
aaacctcaggtgaagatagagctatcccctgtggaagaaccagttgttaatggtgactta
acattagcagacatttctgttttacagaactctgacgaaggggaagacagtgatgaagat
gagacttttttctttacacctgaactttttgagagtgaacaagatgctgatgctgaaacg
ttaaccagggaggatttaactgctgttgaagcagtgcaaaataatgccaatgactttatt
tttaagttccagaactccagtgaaatgctggtccagtataaagaacattgtggctacact
tcatacaaatcagttgacttagtcaaatctgcagtaattaatgatgccagtaatacccat
agagatttaaatactgagggtaagacaatggttaatgcaaatgggcctaataccagaaac
cagctagctgatgaagtggagcaatcatgcctcggagaaacaaagagaaataagctgtcc
aggtctagaaataaaggtgtgtcttgtattgtaacacacagcagtagcagtcaatgtaca
gacaaagaatcagaagcaacaaaaaatgcaggtgactaa
DBGET
integrated database retrieval system
