Larimichthys crocea (large yellow croaker): 104935346
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Entry
104935346 CDS
T04659
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lco
Larimichthys crocea (large yellow croaker)
Pathway
lco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104935346 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lco03021
]
104935346 (polr1a)
Enzymes [BR:
lco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104935346 (polr1a)
Transcription machinery [BR:
lco03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
104935346 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF2277
HMG_box
CDC45
Nop14
Motif
Other DBs
NCBI-GeneID:
104935346
NCBI-ProteinID:
XP_019113909
LinkDB
All DBs
Position
I:complement(41991639..42008533)
Genome browser
AA seq
1688 aa
AA seq
DB search
MLFAKEVPWRRLEGMSFGMYSAEEIRKLSVKAITNSRFLDSVGNVALNSLYDLALGPADN
KEVCSTCCQDFSNCPGHLGHLELPLPVYNPLFFDKLYLLIRGSCLSCHMLTCSRASIHLL
LNQLKLLDHGAMQEVYQIEQYLNQCLEENPKATGDEIQAALQEFTDMIVGANAEGSANAK
PIKHLVEKRGSLITSFWRTYMTSRKCPNCRTGTFTVRREHNTKLIVTVPSGGQISGYTDE
NLAAKRKVYLTASTAREHINKLWEKEAFFLKCLFSGLDEETPKGGDKPFCPDLFFLELLV
VPPCRYRPISRLGDQMFTNGQTVNMQAVMKDSEIIRKLLALIADKKTTQEEEAPGQTDQT
FLAGIPGQTMTDKLYNIWIRLQAHVNIVFDSDMDKLMSEKYPGIRQILEKKEGLFRKHMM
GKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHPG
ASMVINEDGRRTILSPTNFAQREAVAKQLLTPCSGQQKIPMKIVNRHIKNGDVMLLNRQP
TLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELARAEAYTLVST
DQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFTRVQYTELVYRGLTDKPGRVKLLPPA
ILKPQQLWTGKQVVSTLLLNVIPQKAVPLNLVSKSKIPSKAWIQVPPRAVPGYNPDSMCD
SQVVIREGEVLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYRG
FTLGVEDILVKSGANRKRKKIIQESLKIGTKALQAAFNLPSDVDQAEAQSRWQDAHLNPD
QRDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQISC
LLGQIELEGRRPPLMPSGKSLPCFQPYDPSPGAGGFVSGRFLTGIKPQEFFFHCMAGREG
LVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQP
RQFPFIEDNYEVIKRSQGLDRVLALLDPQGASRHFAAIQRWKAKRESACPRRGAFLLFSQ
KKLAKLQQAEQGAALPDVYGRNVAVQQLLQQWHSLDESSRSKYSRKSSRCPEPSLSTLRP
DVCFGSVSENFHSITDKYLQDRDGLSEERLDSHSLRQLFHYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNNKKALKK
AKTLRKKLTRVCLAEVLQKVDVVETLRIEKQKLRTFKVTFHFLPPQRYCDDKLLSPQQIL
HYMETRFFRLLLEAIKKRSAKLASIAVEARKATRTDKDYDGDGTAGSDDRDGEEDREIVD
DAGDEGDTDATDAKRKNKQEEEVDYESEEEDGGDDGEDREDQEQEEAVEEKSEDTQEKSQ
PESVGVKPRKSKNKQDKNGEGGVDLNQMRVNSVLESNTAIESYCYDVQHELWCEVDLVLP
VSNVHFDLTSVLSTLAQDAVIAETKGLTRCLLSETTKKTGDKETVLNTEGINMHEMFKHS
DILDINRLYSNEVHAMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEG
VYKPLNRLAIQSNSSPLQQMTFETSYKFLKQATMLGSHDQLVSPSACLVVGKVVKGGTGL
FELKQPLR
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgttgttcgctaaagaagtgccgtggcggcggctggagggcatgtcgttcggcatgtac
tcagccgaagagatcaggaagttgagtgtgaaggcgatcactaactccaggttcctcgat
tctgtcgggaacgtggccctgaacagcctgtacgatctggccctgggaccagccgacaac
aaagaggtgtgttctacctgctgtcaggacttcagcaactgcccaggacacctggggcat
ctagagctgcctctgcctgtatacaacccgctgttctttgacaaactctacctgctgatc
cgtggctcctgcctgtcgtgtcacatgttaacgtgtagccgagcttccatccacctgctg
ctgaatcagctcaagttgctggaccacggagccatgcaggaggtctaccagatagaacaa
tatctcaaccagtgcctggaggagaatcccaaagcgacaggagatgagatccaggcggcg
cttcaggagttcacagacatgatagttggagcgaacgcagaaggttcggcgaacgccaaa
ccgattaaacacctcgtagaaaagaggggcagtctgattaccagcttctggaggacgtac
atgacttctaggaagtgcccaaactgcaggacgggcacgttcacagtgcgtcgtgaacac
aacactaagctgatagtcacagtgccatcaggaggacagatcagtggctacactgatgag
aatctggcggccaagaggaaagtctacctgacggccagcacggctcgagaacacatcaac
aagctgtgggagaaagaagctttcttcttgaagtgtctgttctccgggctggatgaggag
acaccaaagggcggagacaaacctttctgtccagacctcttcttcctggagctgctggtg
gtgccaccatgcaggtatcgtcctatcagtcgcctgggcgatcagatgttcacaaacggt
cagacggtcaacatgcaggccgtcatgaaggacagcgagatcataaggaaacttctggct
ctcatagcagacaagaaaaccactcaggaggaagaggctcctggacagacagaccagacg
tttctggcgggcatccccgggcagacgatgacggataaactctacaacatatggattcga
ctgcaggcccacgtcaacatcgtcttcgacagcgacatggacaaactgatgtcggagaaa
taccctggaatcagacagatcttggagaagaaggaaggattgttccgaaagcacatgatg
ggaaaacgagtggactacgccgcgcggtctgtcatctgtcctgacatgtacatcgggacc
aacgagatcggaataccgatggtgtttgccaccaagctgacctaccctcagcccgtcact
ccgtggaacgtgaaggagctccgccaggccgtcctcaacgggcccaacgtccaccccggc
gcgtccatggtgataaacgaggacggcaggagaaccatcctgtcgcccaccaacttcgcg
cagagagaagccgtcgccaagcaactgctgacgccgtgttccggccaacaaaagataccc
atgaagatcgtgaatcgtcacataaagaacggagacgtgatgttactgaacagacagccc
accctgcacagaccctccatacaagcccactgtgcacgcatcttaccaggagagaaggtg
cttcgactccactacgccaactgcaaggcgtacaacgccgacttcgacggagacgaaatg
aacgcgcacttccctcaaagtgagctggccagagcggaggcctacacgttagtcagcact
gaccagcagtacctcgtccccaaggacggtaaacctttagcgggtctgatccaggaccac
atggtgtcgggcacgaggatgacgatacgaggctgcttcttcacccgagtccagtacact
gagctggtgtacagaggactgaccgacaaaccgggcagagtcaaacttctgccgccggcc
atcctcaaacctcagcagctatggaccggaaagcaggtggtgtctacgctcctgctgaat
gtgatcccgcagaaggccgtgccactcaacctggttagcaaatccaaaatccccagcaag
gcttggatccaagtcccgccgcgagctgttccagggtacaaccctgacagcatgtgtgac
tcacaggttgtgattcgtgagggggaagtgttggtcggcgtcctggacaaagctcactac
ggctcctcggcctacggtctagtccactgctgctacgagctgtacggaggcgagaccagc
ggcaaactgctcagctgtctggctcgactcttcaccgcttacctgcagctgtacagaggc
ttcactctgggtgtggaagacatcctggtgaaatcgggtgccaacagaaagaggaaaaaa
atcattcaagagtcgctgaagatcggcaccaaagctctccaagcagccttcaacctgcct
tccgatgtggatcaagctgaggctcagagccgctggcaggacgctcacctcaatccagac
cagagagacttcagcatggccgaccacaagttcaaagaagtggccaaccaagtgaacaac
gacattaacaaggtgtgcatgccggtcggactccacacctctttccctgacaacaacctc
cagctgatggtccagtcaggagcgaagggttctactgtaaacaccatgcagatttcgtgt
ctactaggtcagattgagttggagggccgtaggcctccactgatgccttctgggaaatcc
ttgccgtgcttccagccgtacgacccctcgcccggtgctggcggctttgtttctggaagg
tttctcaccggcataaaaccacaggagtttttcttccattgcatggctggcagagaggga
ctggtcgacacagctgtgaaaacctctagatcaggatacctgcagagatgtatcataaag
catctggagggtttagtcgtgcagtacgatctgacggtgagggacagcgacggatccgtg
gtccagttcctgtacggcgaagacgggctcgacatccccaagactcagttcctgcagccg
aggcagttccccttcatagaggacaactacgaggttatcaagaggtcccagggtctggac
agggttttggcacttttggaccctcagggtgccagtcgacactttgcagccatccagcgc
tggaaagcaaagagagagtcggcatgtccacggagaggagcgttcttgctgttctcccag
aagaagttggccaaactccaacaggccgaacaaggagcagcactgccagatgtgtatggc
agaaacgtcgcggtacagcagctcttgcagcagtggcactctctggacgagtccagcaga
tccaaatacagcaggaagtcctcccgctgccccgagccctctttgagcacgttaaggccg
gacgtgtgcttcggatcagtgtctgaaaactttcacagcatcacagacaaatacctgcag
gacagagacgggctgagtgaagagcgcctggattcccacagcctccgccagctgttccac
tataagtggcagcggtcactgtgcgatccaggcgaagcggtcggtctgctggcagcccag
tccatcggcgagccctccacccagatgaccctgaacaccttccactttgccggaagagga
gagatgaacgtcactttgggaatccctcgactgagggagatcctgatggtggccagctcc
aacattaaaactcccatgatgagcgttccggtgctaaacaacaagaaagccttgaagaaa
gccaaaacgctccgtaagaaactcaccagagtctgtcttgctgaggtgctacagaaggtg
gatgtggtagagacgctgcggattgaaaaacagaagttgcggacattcaaagtcaccttt
cacttcctgccgcctcagcgttactgtgacgataagctgctgtcaccccagcagatcctc
cactacatggaaaccagatttttccgcctcctcctcgaagccataaagaaacgcagcgcc
aagctggcgtccatcgccgtggaagccaggaaggccacccgcacggacaaggactacgac
ggagacggaacagcagggtcagacgacagggacggagaggaggaccgggagatcgtggac
gacgcgggggacgaaggagacaccgacgcgacagacgccaagcggaaaaacaaacaggaa
gaggaggtggactacgagagcgaggaggaggacggaggagacgacggcgaggatagagaa
gatcaggagcaggaggaggcggtggaggagaaatcggaggacactcaagagaagtcccag
ccggagtccgtgggtgtgaaaccgcggaagagcaagaacaaacaagacaaaaatggagag
ggcggcgtggacttgaaccagatgagagtgaactctgtcctggagtccaacacggcgata
gagagctattgctacgatgtccagcatgaactctggtgtgaggttgacctggtgttgccg
gtgagcaatgtgcactttgacctcacctcggtcctgtccacgctggcccaggacgccgtc
atcgcggagaccaaaggcttgacgcgctgcctgctcagcgaaaccacgaagaagaccgga
gataaagagacggttctcaacacagagggcatcaacatgcacgaaatgttcaagcacagt
gatatcttggacataaacagactgtactccaatgaggtgcacgccatggcaaacacctat
ggcattgaagtcgctctgaaagtcatagagaaggagatcaaagatgtatttgcggtctat
ggtatcgaggtggatcccagacatctgtcgctcgtagccgactacatgtgttttgaaggt
gtatacaagccgttaaaccgcctcgccatccagtccaactcgtcccctctgcagcagatg
accttcgagacgagctacaaattcctcaaacaggctaccatgctgggctcacacgatcag
ctggtgtcaccttcagcctgcctggtggtgggaaaagtagtcaaaggtggaacgggattg
tttgaactgaaacagcctctgcggtag
DBGET
integrated database retrieval system
