Leptosomus discolor (cuckoo roller): 104339999
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Entry
104339999 CDS
T08399
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ldi
Leptosomus discolor (cuckoo roller)
Pathway
ldi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ldi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104339999 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ldi03400
]
104339999 (MSH6)
DNA repair and recombination proteins [BR:
ldi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104339999 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Autoind_bind
Motif
Other DBs
NCBI-GeneID:
104339999
NCBI-ProteinID:
XP_009955504
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRVHVQFFDDSPTRGWVSMKYLRPYKGSSDGET
LKGGMFYSTKPEIKRAMVLADDAMSKDKTKRLELAVCSEPSDTEEEEEEEEEMEQMSESA
SGNSDDCNSEEDVKSNKRVTNRESAIKAKRRRVLDSDSDHDGSDVEFKPDAKEAASSEEG
SSGVDENESTDMETDAESVAESPIKVPSKRKRRDVNNPAKRSSLENERSETPKRAATVSL
EAKSKLTSFAAPESFESQANACSGGTGGFAVWEHEKLDWLQEGKKKDAHRKRQGDPNYDP
CTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVIFYKVGKFYELYHMDAVTGVNELGLIFMK
GTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMETRYKSMTHPTKFDKVVRREI
CRIITKGTQTYSVLDCDPSENHNKYLLCVKEKEDSSGQRVYGVCFVDTSVGKFYVGQFSD
DRHCSRFRTLVAHYTPVQVLYEKGNLSVDTQKILKGSLVSCIQEGLISGSQFWNASKTLK
VLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGENSELALSALGGCVFYLKKCL
IDQELLSLANFEEYVPVDIDTAKTTSSSSFFARTDQRMVLDGVTLMNLEVLQNGTNGTTE
GTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAVPDKISEVSEHLKKL
PDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIADFLSALEGFKVMNEIVDLM
EEIASDFKSKVLKQLVTRKARNPDGRFPELSAELKRWDTAFDHNQARKTGVITPKVGFDP
DYDKALQDIKAVEEDLHKYLDKQRKLLGFKSVLYWGAGKNRYQMEIPESVVSRNLPEEYE
LKSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKDWQTAVECIA
VLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNSRHPCITKTFFGDDFIPNDIV
IGSKEEDSNSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPVDRVFT
RLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKEL
AEKIKCRTLFSTHYHSLVEDYSHNAAVRLGHMACMVENESEDPSQETITFLYKFTEGACP
KSYGFNAARLANIPEEVIQKGHRKAREFEKMTISLRIFRSLCLLVDGATSDAKGVQKLTA
MMEHL
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccttggtggccgtgtctcatatacaaccatccgactgaaagaacaata
gtcagaggaaaagggaaatccactcgtgtccacgtacagttttttgatgacagccctaca
aggggctgggtcagtatgaaatatctgaggccatataaaggttcatcagatggggagacg
ctgaagggaggtatgttttatagtacaaagcctgaaattaaaagagctatggtgctagcg
gatgatgcaatgagtaaagataaaactaagcggcttgaactggcagtatgcagtgaacct
tcagacacagaggaggaggaggaggaagaggaggaaatggagcagatgagtgaaagtgca
tcaggcaacagtgatgactgcaatagtgaggaggatgtgaaaagtaacaagcgagtaacg
aacagggaaagtgccataaaagccaaaagacgacgagtgttggattctgacagtgatcat
gatggctctgatgtagagttcaagcctgatgcgaaagaagcagcaagcagcgaggaaggt
agtagtggggtggatgaaaatgaatctactgacatggagacagacgcagagagtgttgca
gaaagtcctataaaagtcccttctaaacgaaagagaagagacgtaaataatcctgctaag
aggagtagcttagaaaatgaacgttctgaaacacccaaaagagcagcaacggtttcttta
gaagccaagtctaagctgacatcatttgcagcaccggagagttttgaatctcaagcaaat
gcttgcagtggaggcactggtggctttgcagtatgggaacatgaaaagcttgattggctg
caggaagggaagaagaaagatgcacacaggaaacggcagggtgaccccaattatgaccca
tgtactctgtatgtacctgaggactatctcaacaagtgtacaccaggaatgcggaggtgg
tggcagctgaaaagtcaaaactttgatgctgtgattttctacaaagttggaaaattctat
gagttgtatcatatggatgcagtcactggcgtaaatgagctgggcctgatcttcatgaaa
ggtacttgggcccattcagggtttccagaaactgcatttggcagattctctgatgttcta
gtgcagaaaggctacaaggtagcccgcgttgagcaaacagaaactcccgaaatgatggaa
acgcgctacaagtcaatgacccatccaacaaaattcgacaaggttgtacgcagagaaata
tgcagaatcatcacaaaaggaactcagacttacagcgttctggactgcgatccctccgag
aaccataacaaataccttctgtgtgttaaggaaaaagaagactcctctggacagcgtgtt
tatggggtctgctttgtggacacatcggtggggaagttttatgtaggccaattctcagat
gaccggcactgttcgaggtttaggactttagttgcgcattacactcctgtgcaggtattg
tatgagaaggggaacctgtctgtggacacacagaagatactgaagggctcacttgtttcc
tgcattcaggaggggctgatctctggttcccagttttggaatgcatctaaaacactaaaa
gtccttcttgaagaaggatatttcaaggagaaacagaactctgaaaatggatgttctctg
ccctctgtaatcaaatctctgacttcagagagtgactcgctgggattaactcctggtgag
aacagtgaattagctttgtcagctcttggaggatgtgtcttctacctcaaaaaatgtctg
attgatcaggagctgttatcactagcaaacttcgaggagtatgtccctgtggatattgat
actgcaaaaactacgagttcaagtagtttctttgccaggactgaccagcggatggtgctg
gatggagtcaccctgatgaacttggaagtcctgcagaacggaaccaatggaaccacagaa
ggtactttgttggaaaggatcgattcttgttgtacgccatttgggaagcgactcctgaaa
cagtggctctgcgctccgctttgtaatcctaaatccatcaacgatcgtttagatgctgtt
gaagaccttctggcagtgccagataaaatatctgaagttagcgagcacctgaagaaactt
cctgaccttgaacggctgctcagcaaaattcacagtattggatcgccactgaaaagtcag
aaccaccctgacagccgggccatcttttatgaagaaatcaagtacagcaaaaaaaaaatt
gctgactttttgtctgcactggaggggtttaaagtaatgaatgaaattgtcgatctcatg
gaagaaattgccagtgacttcaaatctaaagtgcttaagcagctagtcacccgcaaagcc
agaaatccagacggccgcttcccagagttgagtgcagagcttaaaagatgggatactgct
tttgatcataaccaggctcgaaagacaggagtgattactccaaaagtgggttttgacccc
gattatgataaagcactacaggatattaaagctgttgaggaagatcttcacaagtacctg
gacaagcaacgcaaactgcttggattcaaatccgtgctgtactggggggcaggcaaaaac
cggtaccaaatggaaataccagaaagtgtagtatcacgtaatttgcctgaggaatacgag
ttgaagtctagcaggaagggatataaacgttactggaccaaggagatcgagaagatgctg
gctgccatggtcaatgctgaagagcgccgagatgcagcactgaaagactgtatgaggcgg
ttgttttacaacttcgataaaaacagcaaagactggcagacagctgtggagtgcattgct
gtgttagatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgc
cgacctgtaattctactgcctgtggatagtgctcctccattcctggaacttaaaaattca
cgccatccatgcattacaaaaactttcttcggggatgattttattcctaatgacatcgtg
ataggcagtaaagaggaagacagcaatagtgaagcttcctgtgtgctcgtaactggccca
aatatgggcggcaaatctacactcatgagacaggctggtctcctggttataatggctcag
ctggggtgctacgtacctgctgaagtctgcaggctcacaccggttgacagagtatttacg
aggcttggtgcctcggacagaattatgtcaggtgaaagtaccttctttgttgaattgagt
gagacttccagcattctccagcatgcaacagagcattcccttgttcttgtggatgaactg
ggcagaggcacagctacttttgacggaacagctatagcgagtgcagttgtgaaagaactc
gcagagaaaatcaagtgtcggacgctgttctccacccactaccattcgctggtggaggac
tattcacacaacgcggctgtgcggcttggccacatggcctgtatggttgaaaatgagagt
gaagatccaagccaggaaaccattacattcctgtataagttcactgaaggagcatgccca
aagagctatggcttcaatgcagcaagacttgctaatattccagaggaagttattcagaag
gggcacagaaaagcacgagagtttgaaaaaatgaccatttccctgagaatatttaggtct
ctgtgcctgctggtggatggcgccacgagcgatgcaaagggtgttcagaaacttaccgct
atgatggagcacctttaa
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