Leishmania donovani: LDBPK_302420
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Entry
LDBPK_302420 CDS
T02289
Name
(RefSeq) pre-mRNA cleavage complex II Clp1-like protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ldo
Leishmania donovani
Pathway
ldo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ldo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LDBPK_302420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ldo03019
]
LDBPK_302420
Enzymes [BR:
ldo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
LDBPK_302420
Messenger RNA biogenesis [BR:
ldo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
LDBPK_302420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
Motif
Other DBs
NCBI-GeneID:
13385662
NCBI-ProteinID:
XP_003862954
UniProt:
A0A3S5H7N4
LinkDB
All DBs
Position
30:complement(911310..912587)
Genome browser
AA seq
425 aa
AA seq
DB search
MQPRKTHTSLHLRQEAVTIQWNAGQEGGSVLLLSGKVELFRSSLTRNLRYAFPAEACIVL
EAFGDAVVQIDGDAITVQTPISGALDEIHALLDTARVDAMLAIDERSKKSLSSSEELKDS
WQGPRVLVVGENQWEREVVSRALLNLAVRHGSPYGICYVDVDVAMPMVGCPGTVSAAFVE
EPVTAPEDFSVMMPLTFFHGAASVTSATRKRYLDLCVCAAQAATSLGFANSKFEAGGFLI
HSLSPSTDIQHDVLSDVLSIFAVTHVVVTGADWELEKFLNNAVVGRTVHFVRLPKLAGGQ
SPSAAGAEQRRRAQLEHYFFGTPRTPLMPVRGVARMSELVLLHAETFEPLSWREVPDLGL
AAVVWADTAASAVEANVAGFVALLEVGKQFVSFLAPSGGELPKPFLVVSPSLHLPRELVM
PLPVT
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgcgtaagacgcacacctcgcttcatctccgccaggaggccgttacgatacaa
tggaatgcggggcaggaaggcggctctgttctgcttctcagtggaaaagtagagctgttt
cgtagttcactgacgcgcaacttgcgctacgcctttccggcggaggcgtgcattgtgctg
gaggcctttggtgacgccgttgtgcagatcgacggagacgcaatcaccgtgcagaccccg
ataagcggtgctctcgatgagatccacgcgctgctagacactgcacgcgtggatgcaatg
ctggccattgacgagcgcagcaagaaatccctgtccagctccgaggagctcaaagactct
tggcagggccctcgtgtgcttgttgtcggcgagaaccagtgggagagggaggtggtgtcg
cgagcactgctcaacctcgcggttcgccacggtagcccgtacggcatctgctacgtggac
gtggatgtggcgatgcctatggtgggctgtccaggtacggtgtcggctgcgtttgtggaa
gaaccggtgacagctccggaggacttttctgtgatgatgccgctgacgtttttccacggc
gcggcctctgtcacgagtgcgacgcggaagcgctacttggatctgtgcgtctgtgcggcg
caagcggccacctcgctcgggttcgccaactccaagtttgaagcgggcggcttcttgatc
cactccttgtccccttccaccgacattcagcacgacgtgctgagcgacgtcctctccatt
ttcgccgtcacgcacgtcgtcgtcaccggcgcagattgggagctggaaaagtttctgaac
aacgctgtcgtgggccgcacagtgcactttgtgcggctgccgaagctggcgggtgggcag
tcgcccagcgccgccggggcggagcagcgtcggcgcgcgcagttggagcactactttttt
ggcaccccacgtactcctctgatgccggtgcgcggtgtggcacgaatgtcggagttggtg
ctcctccacgcggagacattcgagccactgagctggagagaggtgccggacctgggtctt
gccgcggtcgtctgggccgacacggctgcgtctgccgtggaggcgaacgtcgcggggttt
gtcgccttgctggaggtcggaaagcagtttgtcagcttcctcgctccatcgggtggcgag
ctgcccaagccgtttttggtggtctcgccgtccctgcacctaccacgggaactggtgatg
cccctcccggtaacgtag
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