Lapidilactobacillus dextrinicus: LH506_04775
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Entry
LH506_04775 CDS
T06302
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
ldx
Lapidilactobacillus dextrinicus
Pathway
ldx03030
DNA replication
ldx03430
Mismatch repair
ldx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ldx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH506_04775
03430 Mismatch repair
LH506_04775
03440 Homologous recombination
LH506_04775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ldx03032
]
LH506_04775
03400 DNA repair and recombination proteins [BR:
ldx03400
]
LH506_04775
Enzymes [BR:
ldx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LH506_04775
DNA replication proteins [BR:
ldx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LH506_04775
DNA repair and recombination proteins [BR:
ldx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LH506_04775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_a_NII
DNA_pol3_finger
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
DEDDh_C
DNA_pol_A_exo1
RNase_H_2
HHH_3
DUF6282
T2SSK
Zn-ribbon_8
DUF2458
Motif
Other DBs
NCBI-ProteinID:
QFG46801
LinkDB
All DBs
Position
936014..940354
Genome browser
AA seq
1446 aa
AA seq
DB search
MFLAEENLLEKLLEQIQWPESQQEYFQDAELTELVVHQVSQSWTFRIKIAKILPFAVFNQ
FLQQLTQAFAGIAKVNLDLTTINPEFNAIDLQTYWQFVVQDTGIKSPMIAEVCANQTPEL
KDNLIFLSVDNEIVKSFMVKQAIGPIEEAYQRAGFPKLSFRITVDESQVQEKIKDLKAHQ
AQHEQEFAQQAAKQQEQKQKAQAAKSAEVVSDGPITIGGQLKPKTDLITLDKIEQEERSV
YVQGYVFDTEVKTFNSGRSLLTLKITDYTSSIIVKRFSRKNGEDTPLFEQFHKGMWVRVQ
GSVQNDTFTHELTLNANEVEEFSHPEPQDNYQGEQKRVELHLHTNMSQMDATNSIGDFAK
RAKAWGMTALALTDHVGAQSFPDANAASQKFGMKLIYGVEVNLVDDGNQVAYNLRDENAE
DAEYVIFDVETTGLSAVYDTIIELGAVKMKDGQVIGRFDEFINPGHPLSATTINLTNITD
EMVQSGGSETEIINQFMDFAGNANIVGHNVTFDIGFLNAALGRIGHAAVHTPVIDTLEMS
RLLHPENTNHKLDTLAKRYNIVLEHHHRADADAEATGLLYYALLKEFNERFETTNISELN
DRVGGGNAYRLSRPHHAILLAETQAGLKNLFKIISGSMVNYFYRFARVPRSLLNQYREGI
LVGSACSSGEVFTAMMQKGYEEARQKAQYYDYLEVMPKAIYQPLIQRELINDDRALEDII
ENIVKLGEDLHKPVVATGDVHYLDPHDAIYREILIRADKGNPLNRQILPDAHFRSTGEML
EDFAFLGEDKAREIVITNTNKIADLIDDGITPVKDKLYTPKMPGAEEEIRSLAMNKAYEL
YGNPLPKIVDERLQKELKSVIGNGFSVIYLIAQKLVFKSNKDGYLVGSRGSVGSSLVATM
TGITEVNPLPPHYRCPECQYSEFYTKGEYGSGFDLPDKNCPNCGATLVKDGHDIPFETFL
GFKGDKVPDIDLNFSGDYQPIAHNYTKVLFGEQYVFRAGTIGTVADRTAYGYVMHYEEVN
NQQLRGAEVDRLAAGATGVKRTTGQHPAGIIVVPNYMDIYDFTPIQYPADKTDAAWKTTH
FDFHSIHDNILKIDILGHDDPTMIRMLQDLSGIDPVTIPTDDPGVMALFSGTDSLGVTPE
QIHSKTGTLGVPEFGTAFVRGMLEETHPSTFSELLQISGLSHGTDVWLGNAEELINQGVV
TLKDVIGCRDNIMMDLIHWGVDSQLSFQIMESVRKGKGIRDEWQEVLRNNEHVPDWYIDS
CLKIKYMFPKAHATAYILMALRIAYFKVYFPIVYYTAYFSVRADDFDLVAMSHGKEAVKA
RMKALTEEINEKGKGRAVKQANLLTVMELANECLERGIEIKMVDIEKSDSDNFQILDDHT
ILAPFNAIPGLGANVAKQIVAARAERPFLSKEDLATRGKVSKTIIDYMTTNGVLDDLPDE
NQLSLF
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atttttttggcagaagaaaatttattagagaagttattagaacaaattcaatggccagaa
agccaacaagaatatttccaagatgctgaattaacagaattagtcgttcatcaagtctcc
caaagttggacttttagaattaaaattgcaaaaatcttgccgtttgctgtctttaatcag
tttttacagcaattaactcaggcttttgcagggattgctaaggttaatctggatctaacg
acgattaatcctgagtttaacgcgattgatttacaaacttattggcagtttgttgttcaa
gacacggggattaaatcaccaatgattgcagaagtttgtgccaatcaaacgccagaatta
aaggacaacttaatcttcttaagtgttgataatgaaatcgttaagagcttcatggttaaa
caagcaattggaccgattgaagaagcttatcaacgcgctggttttcctaagttaagtttt
cggattacagttgatgaatctcaagtgcaagagaagattaaagacttaaaagctcaccaa
gctcaacatgaacaggaatttgcccagcaagccgctaaacaacaagagcaaaagcaaaaa
gcacaagcagcaaaaagtgctgaagtggtttcggatggtcccattactattggtggtcaa
cttaagcctaagactgatttgattaccttagataagattgaacaagaagaacgttctgtt
tatgttcagggttatgtttttgacactgaagtaaagacgtttaattctggtcgttctttg
ttaactttgaagattaccgattatacttcttcaattattgtgaaacgcttctcgcgcaaa
aatggtgaagacacaccattatttgaacaattccacaaaggaatgtgggtcagagttcaa
ggtagtgttcaaaatgatacgttcactcatgaattaacgttaaacgctaatgaagttgaa
gaattcagtcatccagaaccacaagataattaccaaggtgaacaaaagcgggtcgagtta
catctacacacgaacatgagccagatggacgcgactaattcaattggtgattttgctaag
cgcgctaaagcttggggaatgacggcattagcgttgacagaccacgttggtgcccaatct
tttcccgatgccaatgctgccagccaaaaatttggtatgaaattgatttatggtgtagaa
gttaatctagtcgatgatggtaatcaagtggcgtacaacttacgcgacgagaacgctgaa
gacgctgaatatgttatttttgacgtggaaaccacgggattgtcggccgtttatgacaca
attatcgagttaggtgccgttaagatgaaagacggccaagtgattggtcgctttgacgaa
ttcattaatcctggccatccattatcagcaactacgattaatttaaccaatattacagat
gaaatggttcaatccggcggttcagaaactgaaattattaatcagttcatggattttgca
ggtaatgctaatattgttggtcataacgtcacatttgacattggctttttaaatgcggcc
ttgggtagaatcggtcatgcagctgttcatacaccagtgattgatactttggaaatgtca
cggctgttacatccggaaaacactaaccataaactagatactttagcgaaacgttacaat
attgttttggaacaccatcatcgtgccgacgccgatgctgaagcaacgggcttgttgtat
tatgcattgctaaaggaatttaatgaacgctttgaaactaccaatatttcagaattaaat
gatcgtgtcggtggcgggaacgcttatcgtttatcacgaccgcatcacgcgattttattg
gcagaaactcaagcaggattaaaaaacctctttaaaatcatttctggttcaatggttaat
tacttttatcggtttgctcgggtgccacgttcgcttttgaatcaatatcgcgaaggtatt
ttagttggttcagcttgctcgtcgggtgaagtttttacagcaatgatgcaaaagggttat
gaagaggcacgacaaaaagcgcaatattacgattatctagaagtcatgcctaaagcaatc
tatcaaccattaattcaacgtgagctgattaacgatgatcgtgctttagaagatattatt
gaaaatatcgtgaagttaggtgaggatctgcataaaccggttgtggccacaggggatgtg
cattatctagatcctcatgatgccatttaccgtgaaattttaattcgtgcagataagggt
aatccgttaaatcggcaaattttacctgatgctcattttcgttctactggtgagatgtta
gaagatttcgcctttttgggtgaagacaaagcccgtgaaattgtgattaccaatacgaat
aaaattgctgatctgattgatgatggtattacgccagttaaggacaagctctatacgcct
aagatgccaggtgctgaagaagaaattcgttcgctggccatgaacaaggcttacgagctt
tatggtaatccgttacccaaaatcgttgatgaacgcttgcaaaaagaattaaagtcagtt
attggtaatggcttctcggtaatttatttaattgcgcaaaaattagtatttaagagtaat
aaagacggttacttagttggttctcgtggttccgttggttcaagtttagttgcgacaatg
acaggtatcactgaagttaatccgttaccgccacattatcgttgtccagaatgtcaatac
agcgaattttatactaaaggcgaatatggttctggttttgatttgccggacaagaattgc
cctaattgtggtgctactttagttaaagatggccatgatattcctttcgaaactttctta
gggtttaaaggcgacaaggttcccgatatcgatttaaacttctctggggattatcaacct
attgcccataactacaccaaagtcttgttcggggaacaatatgtttttcgggccgggaca
attggcacggttgccgatcgaaccgcatatggttatgtaatgcattatgaagaggttaat
aatcagcaattgcggggggcagaggttgatcgcttggcagctggtgctactggggttaaa
cgaacaactggtcaacatccggctggtattatcgttgtacctaactatatggatatttat
gattttacgcccattcaatatccagctgataaaaccgatgcagcatggaagacaacacac
tttgatttccattccattcacgataatattttaaaaattgatattctgggccatgatgat
cccacgatgatccggatgttgcaagatttatctggaattgatccagtaaccattcccact
gatgatcctggcgtgatggccttgttctcaggaacagattctttaggtgtaacacctgag
cagattcattctaagactgggacgttaggcgtaccggaattcgggacagcttttgtacga
ggaatgcttgaagagacccatccttcaaccttttctgaattgttacagatttctggttta
tcccatggtaccgatgtttggttaggcaatgccgaagaattaattaatcaaggtgtcgtt
accttgaaagatgttattggttgtcgtgataatatcatgatggatttaattcattggggt
gttgattcacagttaagtttccaaattatggaaagtgtccgtaaagggaaaggtattcgc
gatgaatggcaggaagtcttacgcaacaacgagcacgtacctgactggtatattgattct
tgcttaaagattaaatatatgttcccgaaggctcatgcgactgcctatatcttaatggcc
ttgcgtattgcttacttcaaagtttatttcccaattgtttattacaccgcttatttcagt
gttcgcgcagatgactttgacttagttgccatgtcacatggtaaagaagcggtcaaagcg
cggatgaaagctttaaccgaggaaattaatgaaaaaggtaagggccgtgcagttaaacaa
gccaatttattaacggtgatggaattagccaacgagtgtttagagcgaggaattgaaatt
aagatggttgatattgaaaaatctgattccgataatttccagatcttagatgatcatact
attctagcgccattcaatgctattccaggtctaggtgctaacgttgccaaacaaattgtc
gctgctcgtgctgaacgaccattcttatctaaagaagatttagcaactcgcgggaaagtt
tcaaaaaccattattgattacatgaccactaatggcgtcttagatgatttgccggatgaa
aatcaattatcactcttttaa
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integrated database retrieval system
