Lodderomyces elongisporus: PVL30_002330
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Entry
PVL30_002330 CDS
T01116
Symbol
RPB1
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03020
RNA polymerase
lel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVL30_002330 (RPB1)
09124 Replication and repair
03420 Nucleotide excision repair
PVL30_002330 (RPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_002330 (RPB1)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_002330 (RPB1)
Enzymes [BR:
lel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVL30_002330 (RPB1)
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
PVL30_002330 (RPB1)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
PVL30_002330 (RPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
5230668
NCBI-ProteinID:
XP_001523387
UniProt:
A5E6J4
LinkDB
All DBs
Position
3:complement(15282..20519)
Genome browser
AA seq
1745 aa
AA seq
DB search
MSRQFPHSSAPLKSIKEVQFGLMSPEEIRAISVAKIVYPETFDQATKRFKEGGLNDPRLG
SIDRNYKCQTCGEDMSECPGHFGHIELTRPVFHIGFIAKIKKVLESICFHCGKLLLDEEN
PLMAQAIKIRDPKKRFNAVWGLCKSKMICETSEIEGKRGGCGHTQPTIRRDGLKLWGTWK
SNKNFEDNDQPERRQLTPTEILQIFKHITSEDCYRLGFNEDYARPEWMLITVLPVPPPPV
RPSIAFNDTARGEDDLTFKLADVIKANMNVQRLEMDGSPQHVISEFEALLQFHVATYMDN
DIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGV
PISIAKTLTYPEIVTPYNIHKLTELVRNGPSEHPGAKYVIRDTGDRIDLRYNKRAGDIAL
QYGWRVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDE
MNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQV
MNMCYWIPNWDGVIPPPAIIKPKPLWSGKQMLSLAIPKGIHLQRFDGGRDLLSAKDTGML
IVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPTVCAQLFSSIQKVVNFWLLHNGFSIGI
GDTIADAATMKDITKTIQEAKAKVQEIILDAQHNKLEPEPGMTLRESFEHNVSRVLNQAR
DTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPH
FTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE
DIMVHYDGTTRNSLGDIIQFIYGEDGIDATQVEKQSVDTIPGSDESFERRYRIDVLEKNA
SISTNLLESGEEIQGDVELQKILDEEYNQLLEDRKYLRDVVFPNGDFSWPLPVNLRRIIQ
NAQQIFHSGRDKPSDLRLDEIVESVRDLCTKFLVVRGDTPLMKEAQENATLLFQCLVRSR
LASRRVIEEFKLNKASFEWALGEIETQFQKSVVHPGEMVGVVAAQSIGEPATQMTLNTFH
YAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLDPEVASDIESAKIVQSSIEHTTLKN
VTSSTEIYYDPDPRTTVIEEDYDTVEAYFAIPDQKVEESIEKQSPWLLRLELDRAKMLDK
QLTMAQVAEKISQNFGDDLFVIWSDDTADKLIIRCRVVRDPKSLDEDADAEEDQILKRIE
AHMLESISLRGIPGITRVFMMQHKVSKPDATGEFKQGKEWVLETDGVNLADVMAVPGVDS
ARTYSNDFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAI
TRHGINRSDTGALMRCSFEETVEILLDAAASAELDDCKGISENVMLGQMAPLGTGSFDVM
VDDKMLQQAPTNVAMVEVADDGGATPYRDLEMEDEQIVVDEGAGFSPVHNAMSDNMNGGL
TSYGGQPTSPGNTSPFSYGTTPGYGGTSPGYGGTSPGYGYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPQYSPTSPQYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPRSPNYSPKSPEYKPKS
PSKKD
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgtcagtttcctcactcaagtgcacctttgaaatcgatcaaggaagtccagttt
ggtcttatgtcgccggaagagatcagagccattagtgtggcaaagattgtttacccagaa
acatttgaccaagctacaaaacgttttaaagaaggcggtttgaatgacccaaggctaggc
tccatcgatcgtaactacaaatgtcaaacttgtggagaagatatgtcagaatgtccggga
catttcggccatatagaattaaccagacccgtgttccatattggattcattgccaaaatc
aagaaggttttggaaagtatatgtttccattgtggcaagctcttgcttgatgaagaaaac
ccattaatggcacaagcaatcaagatcagagaccctaaaaagagatttaatgctgtttgg
ggtctatgcaaaagcaagatgatttgtgagacaagcgaaattgaaggcaagcgtggtgga
tgtgggcacacgcaacccacaattcgtcgagatggtctcaagctttggggtacatggaaa
agtaataaaaactttgaagataatgaccaaccagagcgtcgtcaattaacccctacagag
attctccaaattttcaagcacataacctcagaagattgctatcgtttgggattcaatgaa
gattacgcgagacccgagtggatgttgatcactgttttgccagtgcctccaccaccggtt
agaccaagtattgcgttcaatgatactgctagaggagaagatgacttgacattcaagttg
gcagatgtgatcaaggcaaacatgaatgtgcagcgtttggaaatggatggatctccacaa
cacgtcattagtgaattcgaggcattgttacaattccatgttgccacatatatggataat
gatattgcagggcaacctcaagctttgcaaaagactggtcgtccgatcaagtcgattaga
gcgagattgaagggtaaagaaggtcgtttgagaggaaacttgatgggtaagagagttgac
ttttcagcacgtactgttatttctggtgatcccaacttggacttggaccaagtcggtgtc
cccatctcgattgcaaagacattgacatatcctgagattgttacaccatacaatattcac
aaattaacggaattggtgaggaacggtcccagcgagcacccaggtgccaagtatgtgatt
agagatactggtgatcgtattgatttgagatacaataagagagctggagatatcgcattg
caatatggatggagggtggagcgtcatcttatggatgaggatcccgttttgttcaaccgt
cagccttcattgcataagatgtctatgatggcgcacagagttaaagttatgccatactca
acatttagattgaacttgtctgttacttctccatataatgccgatttcgatggtgatgaa
atgaacttgcatgttccacaatctccagagacacggtcagagttgtcgcagatttgtgct
gtgcctttgcagattgtttctcctcaatcaaataaaccagtgatgggtattgttcaagat
acattgtgtggtatccgtaaaatgactttgcgtgatattttcatcgagtatgaccaagta
atgaatatgtgttactggataccaaattgggatggtgtcattcctccaccagccattatc
aagcccaagccactttggtcaggaaagcaaatgctttctttagcaataccaaagggtatt
cacttgcaaagattcgatggaggaagagatttgcttagtgccaaggataccggaatgttg
attgttgatggtgaaatcatgtttggtgttgttgacaagaaaacagttggtgctacaggt
ggaggattgatccacactgttatgagagaaaaaggacctacagtttgtgcacaattgttt
agttcgattcaaaaagttgtcaacttttggcttcttcataatggtttcagtattggtatt
ggtgatacaattgctgatgctgcaacaatgaaggatatcacaaagactattcaagaggct
aaggccaaggtgcaggagattatcttggatgcccagcataacaagttggagccagagcca
ggtatgactttgagagaatcttttgaacacaatgtttctcgtgttttgaatcaagcgcgt
gatactgcaggtcgttctgcagaaatgagtttgaaagatttaaacaatgttaaacagatg
gtggtttcaggttccaaaggttcctttattaatatctcgcaaatgagtgcctgtgttggt
cagcaaattgttgaaggtaagagaattccatttggttttgccgataggtctcttcctcat
ttcaccaaagatgattactcaccagagtctaaaggttttgttgaaaactcgtatttgaga
ggtttaaccccacaagagtttttcttccatgcgatggctggtagagaaggtcttattgat
accgccgttaagacagccgaaactggttatatccaacgtcgtttggttaaagccttggaa
gacattatggtgcattatgatggtacaacaagaaactcacttggtgacattatccaattc
atctatggtgaagatggtattgatgctactcaagttgagaaacaatctgttgatacgatt
ccaggatcagatgagagttttgagaggcgttatagaattgatgtgttggaaaagaatgct
tcaatttcaacgaatttgctcgagtctggtgaggaaatccaaggtgatgtcgagttgcaa
aaaatactcgatgaagagtataatcaattgcttgaggatagaaagtatttgagagatgtt
gttttccccaatggtgattttagctggccattaccagtcaatttgcgtcgtattatccag
aatgctcagcagatattccacagtggccgtgataagccttcggacttgaggttggacgag
attgttgagagcgtacgtgatttgtgcacaaaattccttgttgtgagaggtgatactccg
cttatgaaggaagcacaagaaaatgctacgttgttgttccaatgtcttgttagatcaaga
cttgcatcgcgtagggttattgaggagttcaagcttaacaaggcttcatttgaatgggca
ttgggtgagattgaaactcaattccaaaagtctgtggtccatcctggtgagatggttggt
gttgttgctgcgcaatcgattggtgagcctgctactcaaatgacgttgaacactttccac
tatgccggtgtctcttcaaagaatgttacattgggtgttcctagattgaaggagattttg
aatgttgccaaaaacatcaaaacaccagcattaacagtttatttggacccagaagtggca
tctgatatcgagctggccaagattgttcaatcgtctattgagcacacaactttgaagaat
gttacctcatcaacagaaatctattatgatcctgatccaagaactacggtgattgaagag
gattacgatacggttgaagcttattttgcaattcccgatcaaaaagtcgaggagagcatt
gagaagcagtcaccatggttgttgagattggagttggaccgtgcaaagatgttggataag
caattgaccatggcgcaagttgccgagaaaatatcacagaactttggtgatgacttgttt
gttatctggtccgatgatactgcagataagttgattatccgttgtcgtgttgttagggat
cctaagtctttggacgaggatgctgatgccgaagaagatcaaatattgaagagaattgaa
gcgcacatgttggagtctatctcattgcgtggtattcctggtattaccagagtgtttatg
atgcaacacaaggttagtaaaccagatgcgaccggtgagtttaaacaaggtaaggagtgg
gttttggaaaccgatggtgttaatttggccgatgtcatggcagtaccgggagttgattcc
gcacgtacttattctaatgactttattgagattttgtcggtgttgggtatcgaggctact
agatcggcgttgttcaaggagattttgaatgttattgcatttgatggttcttatgtcaac
tatcgtcatatggcattgttggtggatgttatgacatctcgtggtcacttgatggccatt
actcgtcatggtattaatagatccgacacaggtgcgttgatgcgttgttctttcgaggaa
accgttgagattttgttggacgctgcagcttcagcagagttggacgattgtaaaggtatt
tcggagaatgttatgttgggtcaaatggctcccttgggaaccggttcattcgatgttatg
gttgatgacaagatgttgcagcaggcacctactaatgttgcaatggttgaagttgctgat
gacggtggtgctactccatacagagatcttgagatggaggatgagcagattgttgtggat
gagggtgcaggtttctcgccggtgcataacgccatgtcggataacatgaatggaggtttg
acttcttatggtggccaaccaacctcgcctggcaatacttcgccattcagctatggcaca
acaccaggatacggcggtaccagtccaggatatggtggaaccagtccaggctatggatac
tccccaacatctccatcatactcgccgacatctccaagttactcacctacatctccatcc
tattctccaacatctccatcttattctccaacttcaccttcgtattctccaacttcgcca
agttactcacctacatctccaagttactcacctacatctccaagctactcgccaacttcg
ccaagttattctccaacatctccaagttactcacctacttctccatcatattcaccaaca
tcaccttcgtactcaccaacatcaccttcgtactcaccaacatctccaagttactcacca
acatctccaagctactcgccaacttcgccaagctactccccaacatcaccttcatactca
ccaacttcgccaagttactcaccaacatctccatcatactctccaacatctccaagttac
tctccaacttcaccacagtactcacctacatcaccgcaatattctccaacatcaccttcg
tactcacctacatcaccttcttattcacctacatctccacaatattcccctacatctccc
cagtactctcctagatcgccaaactactcacctaaatcaccagagtataaaccaaagtcg
ccatctaaaaaggattga
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integrated database retrieval system
