Leucoraja erinacea (little skate): 129694003
Help
Entry
129694003 CDS
T09122
Symbol
polr2a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03020
RNA polymerase
leri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129694003 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
129694003 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129694003 (polr2a)
03400 DNA repair and recombination proteins [BR:
leri03400
]
129694003 (polr2a)
Enzymes [BR:
leri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129694003 (polr2a)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129694003 (polr2a)
DNA repair and recombination proteins [BR:
leri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129694003 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
129694003
NCBI-ProteinID:
XP_055486701
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MQGPPSGDSACPLRLIRRVQFGILSPDEMKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLTKTMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQQEGEEDLTKEKGHG
GCGRYQPRIRRVGLELYAEWKHVNEDSQEKKILLNPERVYEIFKRITDEECMILGMDPKY
AKPEWMILTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNNQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYRVERHMCDGDIVIFNRQPTLHKMSMMGHKVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFMSRGEVMNLLMHLSTWDGKVPQPSILKPRPLWTGKQIFTLVIPGHINC
VRTHSTHPDDEDNGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHITFLEMGH
DITRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVIQLRYGEDGLAGESVE
FQSLASVKPSNKTFEKKFKLEYTSERNLRRSLQEDIVKEILSNAAVQNELEVEFDRMRED
REVLRAVFPTGDSKVVLPCNLLRMIWNAQKIFHINARTATDLHPIRVIEGGKELSKKLVI
VNGEDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSGEAFEWLLGEIEAKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPDPQNTVVSEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEQEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
ASAHGEMDPMKGVSENIMLGQLAPAGTGAFDLLLDAEKCKYGMEIPTNIGGMGVGGPTGM
FFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTPPPPTPX
PPPPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPNYTPTSPNYSPTSPVLFAPTSPSYTPTXPNYSPTSPSYSPTSPQLQPHLPSSY
SPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYSPTSPSYSPSSPEYTPTSPKYSPTS
PKYSPTSPTYSPTTPKYSPTSPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYS
PTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPEDSDEEN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggacctccttccggagacagcgcatgcccactgcgcctcatcagaagggttcag
tttggtatcctgagcccagatgaaatgaaacgcatgtccgtgactgaaggtgggataaag
tactcggagaccaccgagggtggcaggccgaagctgggggggctgatggaccccaggcaa
ggcgtgatcgagcggactggacgatgccagacatgcgcgggtaacatgacggagtgcccg
ggccacttcggccacatcgagctggccaagcctgtcttccacgtcggcttcctgaccaag
accatgaaggtcctgcgatgtgtctgcttcttctgctccaagctgctggtcgattcgaac
aatcccaagatcaaagacatcctgatcaagtcgaagggccagccgcggaaacggctgaca
cacgtgtacgacctgtgcaagggcaagaacatctgcgagggtggcgaggagatggacaac
aagtttggagtggagcagcaggagggtgaagaggacctgaccaaggagaagggccacggg
ggctgcggccgctaccagccccgcatccggcgggtgggcctggagctgtacgcggagtgg
aagcacgtgaacgaggactcacaggagaagaagatcctgctgaaccccgagcgggtgtac
gagatcttcaagcgcatcacggacgaggagtgcatgattctgggcatggaccccaagtac
gccaagcccgagtggatgatcctcaccgtgctgcccgtccccccgctgtcagtgcggccg
gccgtcgtcatgcagggctccgccaggaaccaggacgacctgacgcacaagctggcggac
atcgtgaagatcaacaaccagctgcggcgcaacgagcagaacggcgcggcggcccacgtc
atcgccgaggacgtcaagctgctgcagttccacgtggccaccatggtggacaatgagctg
cccggcctgcccagggcgatgcagaagtcgggccggcccctgaagtccctgaaacagcgg
ctgaagggcaaggagggccgtgtccgtggcaacttgatgggcaagcgagtggacttctca
gcgcggaccgtcatcacccctgaccccaacctctccatcgaccaggtcggcgtgccacgc
tccatcgctgccaacatgaccttccccgagatcgtcaccccattcaacatcgacagactc
caggagctggtgaggagaggcaacaaccagtatcccggtgccaagtacatcatccgggac
aacggcgaccggatcgacttgcgtttccaccccaagcccagcgacctccacctccagatc
ggttacagggtggagcgtcacatgtgtgacggagacattgtcatcttcaaccgacaaccc
acgctgcacaagatgtccatgatggggcacaaggtgcgcatcctgccctggtccaccttc
cgactcaacctcagcgtgacgaccccgtacaacgcggactttgacggtgacgagatgaac
ctgcacctgccgcagtcgctggagactcgggcagagatccaggagctggccatggtgccc
aggatgattgtcacgccacagtccaaccggcccgtcatgggcatcgtgcaggacacgctg
actgccgtgcgcaagttcaccaagcgtgacgtcttcatgagccggggtgaggtgatgaac
ctcctcatgcatctctccacctgggacggcaaggttccccagccctccatcctcaaaccc
cgtcccctatggaccggcaagcagatcttcacgctggtcatccccgggcacatcaactgc
gtccggacacacagcacgcatccggacgatgaggacaacggcccttacaaacacatctcg
cccggagacaccaaggtgatagtggagaacggggagctgatcatgggcatcctgtgcaag
aagtccctcgggacgtcggccggctcgctggtacacatcaccttcctggagatgggccac
gatatcaccaggctcttctacagcaacatccagaccgtcatcaacaactggctgttgatc
gaaggtcacaccattggtattggggactccattgctgatgccaagacctaccaggacatt
cagaataccatcaagaaggccaagcaggatgtgatagaggtcattgagaaagctcacaac
aacgagctggagcccacgccggggaacaccctcagacagaccttcgagaaccaggtcaac
cgaatcctcaacgatgcccgtgacaagaccggctcgtccgcccagaagtccctgtccgag
tacaacaacttcaagtccatggtggtcgccggctccaaaggctccaagatcaacatctcg
caggtcatcgcggtggtggggcagcagaacgtggagggcaagcgcattccctttggcttc
aagcaccgcaccctgccccacttcatcaaggacgactacggccccgagagcaggggcttt
gtggagaactcctacctggccgggctcacccccacagagttcttcttccacgccatgggg
ggccgagagggtctcatcgacactgccgtcaaaaccgctgagaccggttacatccagcgg
cgtctgatcaagtccatggagtcggtgatggtgaagtacgatgccacagtgcgcaactcc
atcaaccaggtgatccagctgcgttacggggaggacgggctggccggggagagcgtggag
ttccagagcctggcctccgtcaaaccttccaacaagaccttcgagaagaagttcaagctg
gagtacaccagtgagcggaatctgcgccgctcgctgcaggaggacatcgtcaaggagatc
ctcagcaacgcagccgtgcagaacgagctggaggtggagttcgacaggatgcgggaggat
cgcgaggtgctgagagccgtcttccccacgggcgacagcaaggtggtgctcccctgcaac
ttgctgcggatgatctggaacgcccagaaaatcttccacatcaacgcccggacggccacg
gacctgcaccccatccgtgtgatcgaaggcgggaaggagctgagcaagaagctggtgatc
gtgaacggcgaggacccgctgagccgccaggcccaggagaatgccacgctgctcttcaac
atccacctccgctccaccctctgtagccgccgcatgacagaggagttccgtctcagcggc
gaggccttcgagtggctgctgggagaaatagaggccaagttcaaccagtctatcgcccac
cccggggagatggtgggggctttggccgcccagtcgctgggcgagcccgccacccagatg
accctcaacaccttccactacgccggcgtctcggccaagaacgtcacgctgggcgtgccg
cgtctcaaggagctgatcaacatctccaagaagcccaagaccccgtcgctgacagtcttc
ctgctgggtcagtcggccagggacgcagagagagccaaggacatcctgtgccggctggag
cacaccacgctgcggaaggtgacggccaacactgccatctactacgacccggacccccag
aacacggtggtgtccgaggaccaggagtgggtcaacgtgtactacgagatgcccgacttt
gacgtgacccgcatctccccctggctgctgcgtatcgagctggaccgcaaacacatgacc
gaccgcaaactcaccatggagcagatcgcagagaagatcaacgccggttttggcgatgat
ctgaactgtatcttcaacgacgacaatgcagagaaactggtcctgaggatccgcatcatg
aacagcgacgagaacaagttccaggagcaagaggaggaggtggttgacaagatggatgat
gatgtcttcctgcgctgtatcgagtcgaacatgctgacagacatgacactacagggaatc
gaacagatcagcaaggtgtacatgcacctcccgcagacggacaacaagaagaagatcatc
atcacggaggagggggagttcaaggcgctgcaggagtggatcctggagacggacggggtc
agcctgatgagggtgctgagtgagaaggacgtggacccagtgcggaccacctccaacgac
atcgtggagatcttcacggtgctgggcatcgaggcagtacgcaaggccctggagcgggaa
ctctaccacgtcatctccttcgacggttcctatgtcaactaccgccacctgtcgctactg
tgcgacaccatgacgtgccgcgggcatctgatggccatcacccggcacggggtcaaccga
caggacaccgggcccctcatgaagtgctccttcgaggaaacggtggacgtgctgatggag
gcgtctgcccacggtgagatggatcccatgaagggggtatcggagaacatcatgctggga
cagctggccccggctggcactggggcctttgacctgctgctggacgccgagaaatgcaaa
tacggcatggagatccccaccaacatcggtggcatgggagtggggggccctacgggaatg
ttcttcggctccgctcccagtcccatgggagggatgtccccagcaatgactccctggaac
cagggggccaccccggcatacggagcctggtcaccgagcgtgggcagtggaatgacacca
ggagcggccggcttctcaccaagtgccgcgtcggacgccagtggcttcagccccggttac
tcgcccgcctggtcccccacccccgggtcaccggggtctccgggcccctccagcccctac
atcccgtctccaggcggagcgatgtcccccagctactcccccacctctcccgcctacgag
cctcgatcccccgggggctacaccccccagagcccctcgtactcgcccacctccccctcc
tactcccccacctccccttcctactcccccacctcccccaactacagccccacctccccc
tcctactctcccacctccccctcctactctcccaccagcccctcctactcccccaccagc
ccttcctactcccccacctccccctcttactcccccacacctccccctcctactcccnnc
ccccctcccccttcctactccccgacttcccccagttactcccccaccagccccagttac
tctcccacctccccctcctactcccccaccagcccttcctactcgcccacctctccttcc
tactctcccacctccccctcgtactctcccacctccccctcttactccccgaccagcccc
tcctattcccccacctccccaaattacactcccacctcccccaactactcgcccacctcc
cccgtcctattcgcccccacctccccttcctacactcccaccntccccaactactccccc
acctctccctcctactcgcccacctctccccagctacagccccacctcccctcctcctac
tcgccctccagcccccgttacacaccccagtcgcccacctacactcccagctctcccagt
tacagccccagcagtcccagctactcgccgaccagccccaagtactccccgaccagcccg
tcctacagccccagctccccggagtacacccccacctcccccaaatactcgcccacctcc
cccaaatactctcccacctcccccacctactctcccaccacacccaagtactctcccacc
tcccccaagtactctcccacctcccccacctactcgcccacctcccccgtctacaccccc
acctcccccaaatactctcccacctcccccacctactcgcccacctcccccaagtactcg
cccacctcccccacctactcgcccacctcccccaagggctccacctactctcccacctcc
ccgggctactcccccacctcgcccacctacagcctcaccagccccgccatcagtcctgag
gacagcgatgaggagaactga
DBGET
integrated database retrieval system
