Leucoraja erinacea (little skate): 129697610
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Entry
129697610 CDS
T09122
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129697610 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leri03021
]
129697610 (polr1b)
Enzymes [BR:
leri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129697610 (polr1b)
Transcription machinery [BR:
leri03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129697610 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
129697610
NCBI-ProteinID:
XP_055492285
LinkDB
All DBs
Position
5:96172746..96242160
Genome browser
AA seq
1145 aa
AA seq
DB search
MATAMSGRWRRLCGEERLEPALRRRWRSGARAGQDQQLEAEAAALQQLVAAHVRSFNHAV
AEGLSRAVQDIRPLEFDYKNERITLVFADALISPPTVPKGSICSDMKIYPAECRGRRSTY
KGKLTADISWSVNGIPKGIIKHSLGLIPIMVKSTLCNLHGLSLQDLIKHHEEAEEMGGYF
IINGIEKVIRMLIMPRRNFPIAVLRPKWKSRGPGYTQYGISMHCVKDEHTAINMNLHYLD
NGTVMVNFIYQKELFFIPLGFALKGLVDFTDFQIYQELIKGKESNSFFKSCVAQMLRLVM
TEGCTTKKQLLNYLGQRFRVKLYLPEWYTNEQAAEFLFDHCLCVHLKSNVEKFYLLCLMT
RKLFAFAKGECQAENPDSLINHEVLTPGQLYLMFLKEKMELWLQSIKLALDKKSQKGTIQ
INSENLMKVFNLVPDLSRPFEYLLATGNLRSKSGLGMLQDSGLCIVADKLNFIRYLSHFR
CVHRGAAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEIVTQTSSTVTL
PTLLCGLGVTPIDGTPSQPYSECYPVLLNGALVGWVEKDKGPRIADALRNFKVLQMKKVP
AWIEIVLIPMMDKPGIYPGLYLFTTMCRMIRPVRNLALGKEELIGTLEQLYMNIAITEAD
ILPGITSHQELFPHSMLSVVASFIPYSDHNQSPRNMYQCQMGKQTMGFPLYTFPARSDSK
LYRLQTPQSPLVRPHMYDFYNMDNYPIGTNAVVAVISYTGYDMEDAMIINKASWERGFAQ
GSVYKTEIIDLDQQVKQSNGNIVFGVASGQTRVTHKLDDDGLPPVGAVLEYGDPYYGYVN
LNTGDGFVSYYKSKESGVVDNIKVCGNDSGTALFKRVCITLRIPRNPTIGDKFASRHGQK
GILSRLWPAEDMPFTESGMAPDILFNPHGFPSRMTIGMLIESMAGKSAAAHGLCHDATPF
TFSEENSALEHFGKMLRAAGYNHYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKF
QVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSLAHVC
VDCGSLLSPLLEKPPPSWSATRHRKYQCTVCHKSDTIEVISLPFVFRYFVAELAAMNINV
QLNVR
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcgatgtcgggccggtggcggcgcctgtgcggggaggagcgcctggagccg
gcgttgcggcggcggtggaggagcggggcccgggccgggcaggaccagcaactagaggcc
gaggccgcggcgctgcagcaactggtcgccgcccatgtccgctccttcaaccacgctgtc
gcagaggggctgagccgggccgtgcaggatattcgtccactcgagttcgattataaaaat
gagcgcatcaccctggtgtttgcagatgctctcatcagtcccccaactgtcccgaaaggc
agcatctgcagtgacatgaaaatctacccagcggagtgccgaggccggcgtagtacttac
aagggcaagctaactgcagatatcagctggtcggtgaatggcattcccaaaggtatcatt
aaacacagccttggtctgatccccatcatggtcaaatcaaccctctgcaacctgcacggc
ctctctcttcaagatctcatcaaacatcacgaagaagcagaggaaatgggaggatacttc
atcataaatggcatagaaaaggtcatccggatgctgatcatgccccgtcggaattttccc
atcgctgtgctgagacccaagtggaagagcagaggcccaggctacacgcagtatggtatt
agcatgcactgtgtgaaggatgagcacacagctatcaacatgaacctccactatctggac
aacggcacagtgatggtcaacttcatttatcagaaggaactcttctttatcccactcggg
tttgcactgaaggggttagttgatttcaccgatttccagatttaccaggagttgatcaaa
gggaaggagagcaactccttcttcaagagttgtgtggcgcagatgctgagactggtgatg
acggagggctgcaccaccaagaagcagctcttgaattacctgggccagaggttccgcgtc
aagctttatctccccgagtggtacaccaacgagcaagccgcagagttcctgttcgatcac
tgcctgtgtgtccacttgaagtctaacgtagagaagttctatttgctctgcttgatgacc
cggaagttgtttgcattcgccaagggtgaatgccaggcagagaatccagacagtttgata
aatcatgaagtattgactcccggtcaactctacctgatgtttttgaaggagaagatggag
ttatggttgcaatccattaaactagccctggacaaaaagagccaaaaaggaaccatccag
attaactccgaaaacctgatgaaagtttttaatttagtgccagatctgtcgaggccattt
gagtacctcttggccactggaaacctgcgctcaaaatcgggtctgggaatgctgcaggac
tctggtctgtgcatcgtggcggacaagttgaacttcatccgctacctttcccatttccgc
tgcgtgcacagaggggcggcctttgccaagatgagaaccacgtctgtacgcaggttactg
ccggagtcctggggcttcctgtgccccgtgcacactccggatggagagccgtgtggcctg
atgaaccacctgacagctatctgtgagattgtcacccagacatccagtaccgtcaccctg
cccactctgctctgtggacttggagtcacccctatcgatggcacacccagccagccttac
tccgagtgctacccagtcctgctgaacggtgccctggtgggctgggtcgagaaagacaaa
ggacctagaattgccgatgccctgcgcaactttaaggtgctacagatgaagaaagtgccc
gcctggatagagattgttctgattccaatgatggataagcccggtatttacccgggattg
tacctcttcaccaccatgtgccgaatgatccgtccagtcaggaacctggccttgggaaag
gaagagctcattggaacacttgaacagctgtacatgaacattgccatcactgaggcagac
atcctgcccggaataacgagccatcaggagctttttccccacagcatgctgagtgttgtg
gctagtttcatcccctactctgatcacaaccaaagtcccaggaacatgtaccagtgtcag
atggggaagcagacaatggggtttccattgtacactttcccagccagatcggatagcaaa
ctgtatcgtctccaaactccacagagtccactggttcggccgcatatgtatgacttttat
aatatggacaactaccccataggaaccaatgctgttgtggctgtcatctcctacactgga
tatgatatggaagatgctatgattatcaacaaggcatcatgggagcgaggctttgcccag
ggaagtgtctataagacggaaataatcgaccttgaccagcaggttaagcaaagcaacggg
aacattgtgttcggcgtagcgtccggtcaaacgagagtcacacacaaactagatgatgat
ggattgccaccagtcggggctgtactggagtacggtgatccgtattatggttacgtcaac
cttaacactggggatggttttgtcagctactacaagagcaaggagagcggcgtggtggat
aacatcaaggtgtgtggcaacgacagtgggacagcgctgtttaaacgggtctgcatcacc
ctgaggatcccgcgcaaccccaccatcggggataagtttgccagccggcacgggcagaag
ggcatcttgagccgtctgtggccagcggaggacatgccgttcacggagagcgggatggcg
ccggacatcctgttcaacccgcacggcttcccttcccgcatgaccatcggcatgctgatc
gagagcatggcgggcaagtctgccgccgcgcacggcctgtgccacgacgccacgcccttc
accttctccgaggagaactcggccctggagcactttggcaagatgctgcgggcagccggc
tacaaccactacggcacggagaggctctacagcggcattagcgggctggagctggaggcg
gacatcttcatcggggtggtctactaccagcgcctgcgccacatggtgtccgacaagttc
caggtgaggaccactggggcgagggacaaggtgaccaaccagcccctggggggcaggaac
gtccaggggggcattcgctttggggagatggagcgcgacgccctgctggctcacggcacc
tccttcctgctccacgaccgtctcttcaactgctccgaccgctcgctggcccacgtgtgc
gttgactgcggcagcctgctctcgccgctgctggagaagccaccgccgtcctggtccgcc
acccgccaccgcaagtaccagtgcaccgtctgccacaagtccgacaccatcgaggtcatc
tccctgcccttcgtcttccgctactttgtggccgagctggctgccatgaacatcaatgtc
caactcaacgtgcgatga
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