Leucoraja erinacea (little skate): 129700660
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Entry
129700660 CDS
T09122
Name
(RefSeq) vascular cell adhesion protein 1-like
KO
K06527
vascular cell adhesion molecule 1
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
129700660
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
leri04090
]
129700660
04091 Lectins [BR:
leri04091
]
129700660
CD molecules [BR:
leri04090
]
Proteins
129700660
Lectins [BR:
leri04091
]
I-type lectins (Siglecs)
129700660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set_2
C1-set
ICAM1_3_5_D2
Dicty_CAD
Motif
Other DBs
NCBI-GeneID:
129700660
NCBI-ProteinID:
XP_055497215
LinkDB
All DBs
Position
10:complement(55162459..55202431)
Genome browser
AA seq
1067 aa
AA seq
DB search
MAGDRCDPAATITLALMLATGSAFNLELNPSRNVWARIGDSLELNCEAKNCSSPTFTWRI
GTDNPLGGTITTRGSVSTFTISAVTTQNQHKYTCSAKCGTEEKTNICQPQYILEQFSFCF
LCVAALSDTLIVETVGSLEVGQRGSVRCTVPKVYPAQVEVEWLKGTTLVKTDSFRDYTEE
ETAMNFIYELTPELRDSGQELTCRVQLLTENQPRKAEGSLTLQVHYAPTGIDITAEPSAT
VREGQDVRLTCAADSSPAATIVWSKLSAGNWSVVAEDRAILHLSPALFGDTGMYRCEAGN
KLGTITKEVEFHVQGSPRDTTLSITPSAVKGGDRVTFSCTTQSNRPAHLVLRRQSASGWS
ELDYANGTLTIRDVKPADAGLYQCEAINALGKQINITKLQVQGSPRDTTLSDVKEGDRVT
FNCTTQQINSNKLQVQCSISDGAAMAASPTVSPFVFFLLFLLLFKNLCKLELTSHGDYYI
WREKVTIGCTIHNIPSANFTWKKVVNNSENVLSFSNNSFTILEKYTSFRSTVGDSELDAN
ELSLTSPDVGVVQGSAFNLELNPSRNVWARIGDSLELNCEAKSCSSPTFTWRIGTDNPLG
GTITTRGSVSKFTISAVTTQNQHKYTCSAKCGTEEKRKYANLNIFSLSDTLIVETVGSLE
VGQRGSVRCTVPKVYPAQVEVEWLKGTTLLKTDSFRDYTEEETAMNFTYELTAELRDSGQ
ELTCRVQLLTENQPRKAEGSLTLQVHYAPTGIDITAEPSATVREGQDVRLTCAADSSPAA
TIVWSKLSAGNWSVVAEDRAILHLSPALFGDTGMYRCEAGNKLGTITKEVEFHVQGSPRD
TTLSITPSAVKEGDRVTFSCTTQSNPSAHLVLKRQSSSGWSELDSENGTLTIRDVQPADA
GLYQCEATNALGKQINITKLQVQGSPRDTTLSITPSAVKEGDRVTFSCTTQSNPPAHLVL
RRQSSSGWSKLDSENGTLTIRDVQPADAGLYQCEATNALGKQINITKLQVQEKIPDIATP
AENPAGVLEAVCIGAALVSAGLICSALFYAFRRSNLIKSYKIAGEIL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggctggagacagatgcgacccagccgctacaattactcttgcattgatgctcgccaca
ggatccgccttcaatttggagttaaacccgtctagaaacgtgtgggctcgtatcggggac
tcgctggagttgaactgtgaggcgaagaactgctcgtctccgaccttcacgtggagaatc
gggaccgataaccccctgggcggaacaatcacaactcggggctcggtgtccacattcacc
atctccgcggttactactcagaaccaacacaagtacacttgttccgcaaaatgcggcaca
gaagaaaaaacgaacatatgccaacctcaatatattctagagcagttttccttctgtttt
ctctgtgttgcagctctgtccgacacactcatcgtggagactgtgggcagtctggaagtt
ggccagagaggctcagtgagatgtacggtccccaaagtctaccccgctcaagtggaggtg
gagtggctgaaaggaacaacattggtgaagaccgacagcttccgtgactacacagaggaa
gaaacggcgatgaacttcatctacgaactgacgcctgaattgcgagactcgggacaagag
ctgacatgccgagtgcaattactcacggagaaccaaccacgcaaggccgaggggtcgcta
acgttacaggttcactatgctcccacggggattgacattactgcagagccctctgccaca
gtgagagagggtcaggatgttcggctaacctgtgctgcagacagcagccccgctgccacg
atagtgtggagcaagttatccgccggcaactggtcagtcgtggccgaggaccgagcgatt
ctgcacctgtcaccggccctgttcggggacacgggaatgtaccgctgtgaagccggcaat
aaactggggacaatcaccaaggaggtggaattccacgttcaaggtagccccagggacacg
actctctccatcaccccctctgctgtgaagggaggagacagggtcacgttcagctgcaca
acccagtccaaccgccctgcccatcttgtactgaggaggcagtcagcgagcggatggagc
gagctagactatgcgaatgggacattgacaatccgtgatgtcaagccagctgatgcaggg
ctgtatcaatgtgaggccattaatgctctggggaagcagatcaacatcaccaaactccag
gttcaaggtagccccagggacaccactctctccgatgtgaaggaaggagacagggtcaca
ttcaactgcacaacccagcagatcaacagcaacaaactccaggttcaatgttcaatatcg
gatggtgccgcgatggcagcttcgccaacagtctccccttttgtcttttttttgttattt
ctattattatttaaaaatttgtgtaaacttgagctgacaagtcatggtgattattatata
tggcgagaaaaggtcaccattggctgcaccattcataacatcccctcagccaatttcacc
tggaagaaagtagtgaacaacagtgaaaatgtgctgtccttcagtaacaacagctttaca
atccttgaaaaatacaccagtttccggtcgacagtcggcgacagtgagcttgatgccaat
gagcttagcttgacgtctcctgacgtaggtgttgtccaaggatccgccttcaatttggag
ttaaacccgtctagaaacgtgtgggctcgtatcggggactcgctggagttgaactgtgag
gcgaagagctgctcgtctccgaccttcacgtggagaatcgggaccgataaccccctgggc
ggaacaatcacaactcggggctcggtgtccaagttcaccatctccgcggttactacgcag
aaccaacacaagtacacttgttccgcaaaatgcggcacagaagaaaaaagaaaatatgcc
aacctcaatatattctctctgtccgacacactcatcgtggagactgtgggcagcctggaa
gttggtcagagaggctccgtgagatgtacggtccccaaagtctaccccgctcaagtggag
gtggagtggctgaaaggaacaacattgctgaagaccgacagcttccgtgactacacagag
gaagaaacggcgatgaacttcacctacgaactgacggctgaattgcgagactcgggacaa
gagctgacatgccgagtgcaattactcacggagaaccaaccacgcaaggccgaggggtcg
ctaacgttacaggttcactatgctcccacggggattgacattactgcagagccctctgcc
acagtgagagagggtcaggatgttcggctaacctgtgctgcagacagcagccccgctgcc
acgatagtgtggagcaagttatctgccggcaactggtcagtcgtggccgaggaccgagcg
attctgcacctgtcaccggccctgttcggggacacgggaatgtaccgctgtgaagccggc
aataaactggggacaatcaccaaggaggtggaattccacgttcaaggtagccccagggac
accactctctccatcaccccctctgctgtgaaggaaggagacagggtcacgttcagctgc
acaacccagtccaacccctctgcccaccttgtactgaagaggcagtcatcgagcggatgg
agcgagctagactctgagaatgggacattgacaatccgtgatgtccagccagctgatgca
gggctgtatcaatgtgaggccactaatgctctggggaagcagatcaacatcaccaaactc
caggttcaaggtagccccagggacaccactctctccatcaccccctctgctgtgaaggaa
ggagacagggtcacgttcagctgcacaacccagtccaacccccctgcccaccttgtactg
aggaggcagtcatcgagcggatggagcaagctagactctgagaatgggacattgacaatc
cgtgatgtccagccagctgatgcagggctgtatcaatgtgaggccactaatgctctgggg
aagcagatcaacatcaccaaactccaggttcaagaaaaaatacctgatatcgcaactcct
gccgagaatcctgcgggtgttctggaagcagtgtgtataggagccgcacttgtatcagca
ggactgatatgttctgctctgttttatgcctttcgcagaagcaacttgataaaatcttac
aaaatagcaggagagatactgtga
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integrated database retrieval system
