Leucoraja erinacea (little skate): 129711763
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Entry
129711763 CDS
T09122
Symbol
prdm16
Name
(RefSeq) histone-lysine N-methyltransferase PRDM16 isoform X1
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
leri
Leucoraja erinacea (little skate)
Pathway
leri00310
Lysine degradation
leri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
leri00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
129711763 (prdm16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
leri03000
]
129711763 (prdm16)
03036 Chromosome and associated proteins [BR:
leri03036
]
129711763 (prdm16)
Enzymes [BR:
leri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
129711763 (prdm16)
Transcription factors [BR:
leri03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
129711763 (prdm16)
Chromosome and associated proteins [BR:
leri03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
129711763 (prdm16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
PRDM2_PR
zf-C2H2_4
zf-C2H2_jaz
zf-C2H2_6
zf-C2H2_11
SET
zf-met
zf-H2C2_5
zf-BED
zf-C2H2_8
Motif
Other DBs
NCBI-GeneID:
129711763
NCBI-ProteinID:
XP_055515668
LinkDB
All DBs
Position
30:25767916..26501370
Genome browser
AA seq
1213 aa
AA seq
DB search
MRSKARARKLAKSDSEVVDNMYETDPEPPAGESGGEETEDSIMSPIPVGPPSPLPTSNEF
TPKEGSPYEAPVYIPEDIPIPPDFELRESSIPGAGLGIWAKKKLEVGEKFGPFAGVQRGT
LKDPNFGWEIVDELGNLKFCIDANQAGSGNWLKYICSAHTYNHQNLVACQINDQIYYKVI
KEVKSGDELLVFMKDGVYPDGTMPPNLDEEQRYRCGDCDELFRSKVALRRHQAYACNNAN
AIFTTINEEFKQGQLDDGQLHECKDCDRIFPNEYSLEQHMIIHSEEREYKCDQCPKAFNW
KSNLIRHQMSHDSGKRFECENCDKVRLKVFTDPSNLQRHIRSQHVGARAHACPDCGKTFA
TSSGLKQHKHIHSSVKPFTYRRQGQAWTQSDGEVCHKSYTQFSNLCRHKRMHADCRTQIK
CKDCGQMFSTTSSLNKHRRFCEGKNHYNPSPMFHQGLPLTPSAMLDKSKPTSSLNHASLG
FNDYFPSRQHPTGLPFSPTATFPALAPGFPGLFPHSLYPRAPVLPSNALLKGCLNHDIDA
NVQSHMGNPSVSQASSLVSSFNDRDAPLEGKNNVRSDNCFTEKNKVKNTDLSEGSDFEDI
NTTSGTDLETTTGTGSDLDSDVESDGDKKKEKASLSAKGTENVTSVSLNTNNEIDEQAQY
LPSQHSFFPPPDEQSLPTSAANDSIKAIASIAEKYFGTGFMGMQEKKMGSLPYHSMFPFQ
LFPNFPHSIYPFTDRNLNSNLLVKNEPKSPREHQKSGNASSESPFDLTTKRKEAKLLPAS
KLIVSTLSGEEQPLDLSISGRSRVSQNGPGEPRKNHVFGERKMMINDELPKVPHQQPFHY
AKPSPFFMDPIYSRVEKRKVMDPLNSLKEKYLRPNPLLFHPQMAAMETMTEKLESFGTLK
MDTMGALQPSPHHGFNFRSPPSTISDAILRKGKERYTCRYCGKIFPRSANLTRHLRTHTG
EQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHENESI
PVSQQSGVSSNHLGTSAFSPNSELDNTALLEEKEESYFSEIRNFIGNNDLSQASSSADKR
HEVQGGHQQASHPLTKQKMEEVDDEDEEEELEEEEEEEDESMTEKSQDDPVSPKTDPTVS
FRESEEERPSPLALAYEQTHRWVSPRHVLHIPLVTKHAALPHECLVYHVWTEKVHMVLGP
SHGVLFPLESYLI
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgagatccaaggcaagggcgagaaaactggccaaaagtgacagtgaagtggttgataat
atgtatgagacagatccagagccaccggctggagagagtggaggagaagaaacagaagac
agtataatgtccccgattcctgtgggtccgccatctccacttcccaccagcaacgaattc
accccaaaagaagggtccccatatgaagcccctgtctacattccagaagacattccaatc
ccacctgactttgagctaagggagtcttcaattcctggcgctggattagggatatgggcc
aagaagaaacttgaagtgggagagaaatttggtcctttcgccggagttcagagggggaca
ttgaaagatccaaattttggatgggagattgttgatgagctggggaatttaaaattctgc
attgatgcgaaccaggctggaagcgggaactggctgaagtacatctgctcagcgcacacc
tacaaccatcagaatttagtagcttgtcagattaatgaccagatttactataaagtaatt
aaagaggttaaatcgggtgatgagcttcttgtttttatgaaggacggtgtctatcctgat
gggacaatgccaccaaatcttgatgaggagcagaggtaccgctgtggggactgtgacgag
ctgttccgctcgaaggtggcactgcggcggcaccaggcgtatgcctgcaacaacgccaac
gccatcttcaccaccatcaacgaggagttcaagcagggccagctggacgatgggcagctg
cacgaatgcaaggactgtgaccgcatattccccaacgaatacagcctagaacaacacatg
ataattcacagtgaagaacgtgaatataagtgtgaccaatgtccaaaggccttcaattgg
aagtcaaaccttattcgccatcaaatgtcacatgacagcggaaaacgctttgagtgtgaa
aattgtgataaggtaaggttgaaggtgttcaccgatccaagcaacctccagcggcacatc
aggtctcagcatgtgggagctcgggcacacgcttgccctgactgtgggaaaacctttgcc
acgtcttctggattaaagcagcacaagcacatacacagcagcgttaaaccattcacctat
aggaggcagggacaagcatggacacagagtgatggtgaggtctgtcacaaatcctacact
cagttctccaacctctgtcgacataaaagaatgcacgccgattgtcggacacaaataaag
tgcaaagactgtggtcagatgttcagcaccacctcctcgctgaacaagcaccgtaggttt
tgtgagggcaagaaccattataaccccagtccaatgtttcatcaaggtctaccactcact
ccgagtgccatgctggacaagtccaagcctacatcctctctcaaccacgcttccttgggc
ttcaatgattatttcccctcgcgccaacacccaacgggattgcccttctcgcccacagcc
acgtttccagctctcgctccaggcttcccaggccttttcccccactcgctctatccccga
gctcctgtgctaccaagcaacgcgttgttgaaaggctgcttaaatcacgatattgatgca
aatgtccagagccacatggggaacccctccgtatcacaagcatcatccttggtgtcttcc
ttcaatgacagggacgcccctttagaagggaaaaacaatgttcgatctgacaattgtttc
actgagaaaaacaaggtaaaaaacactgacttatcggaaggtagtgactttgaagacatc
aatacaacaagtgggactgacctggaaacaacgacaggcactgggtctgatttggacagt
gatgtggaaagcgatggagataaaaagaaggaaaaagccagtctgtcagccaaaggaacg
gagaacgttacttcagtctccctcaacacgaacaacgaaatcgatgaacaggcgcagtac
cttccatcccaacattccttcttcccccctcccgatgaacagagcctcccgaccagcgct
gctaacgattccattaaagctatcgcttccattgcggagaaatactttggcacaggtttc
atggggatgcaagagaagaaaatgggatcacttccataccactccatgtttccgttccag
ctcttcccgaacttcccacattccatatatcctttcacggaccgaaatcttaattccaat
ctcctggtgaaaaatgagccaaagtcgccaagagagcaccagaaaagtggcaatgccagc
tccgagtcgccctttgaccttaccaccaaacggaaagaggcaaagctcctccccgcgtct
aagcttatagtgtccacgctatctggcgaggagcaacccttggacctgagcatcagtggc
cgcagccgggtcagtcaaaacggcccaggagagcccaggaagaaccacgtgtttggtgaa
cgcaaaatgatgatcaatgatgagctccccaaggtgccgcaccagcaacccttccattac
gccaagccatcgccctttttcatggatcccatctacagcagggtggagaaaaggaaagtg
atggatcctctgaactcattgaaggagaagtatctgcggccaaacccactgctgttccac
cctcagatggctgctatggagaccatgacggagaagttggagagttttggtacattaaaa
atggacaccatgggtgctctgcaaccctctccacaccatggcttcaacttccgatcaccc
ccatccaccatctcagatgccattctccgcaaagggaaggagcgttacacgtgcagatac
tgtgggaagatctttccaagatcagcaaatcttactcggcatctcagaacgcacacagga
gagcagccttacaggtgtaagtactgtgacaggtcattcagcatctcctcaaacctgcaa
aggcatgttcgcaacatccacaataaagagaagccattcaaatgccacttgtgcaaccgt
tgctttgggcagcagaccaatctggatcgccacctcaagaaacacgagaatgagagcatc
ccagtgagccagcagtctggggtctcatccaaccacctgggcaccagtgcattttccccc
aactccgagttagacaacactgcacttttggaagagaaggaggaatcgtacttctcggaa
atccggaatttcattgggaacaatgacctcagccaggcttccagttcagcagacaaaagg
cacgaggtgcaaggtggtcaccagcaggctagtcatccgctgaccaagcagaaaatggag
gaggttgatgatgaggatgaagaggaggagctggaggaagaggaggaggaggaggatgag
agcatgacagagaagtcccaggatgacccagtttcaccgaagactgatcccacagtctcg
ttccgcgagagtgaagaggaacgcccatccccgcttgccctggcgtacgagcagacccac
cggtgggtatcacccagacatgtcttacacatccccctcgtgacaaagcatgctgccctt
ccccacgaatgcttggtgtatcacgtatggactgagaaggtccacatggtgttggggcca
tctcatggggtgctgtttccattggaatcgtacttgatttaa
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integrated database retrieval system
