Limosilactobacillus fermentum IFO 3956: LAF_0722
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Entry
LAF_0722 CDS
T00699
Name
(GenBank) DNA-directed DNA polymerase III alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lfe
Limosilactobacillus fermentum IFO 3956
Pathway
lfe03030
DNA replication
lfe03430
Mismatch repair
lfe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAF_0722
03430 Mismatch repair
LAF_0722
03440 Homologous recombination
LAF_0722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfe03032
]
LAF_0722
03400 DNA repair and recombination proteins [BR:
lfe03400
]
LAF_0722
Enzymes [BR:
lfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LAF_0722
DNA replication proteins [BR:
lfe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LAF_0722
DNA repair and recombination proteins [BR:
lfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LAF_0722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_a_NII
DNA_pol3_finger
DNA_pol3_a_NI
tRNA_anti-codon
HHH_6
RNase_H_2
HHH_3
T2SSK
AAL_decarboxy
tRNA_anti_2
YhfH
DUF655
Zn-ribbon_8
Motif
Other DBs
NCBI-ProteinID:
BAG27058
LinkDB
All DBs
Position
841940..846283
Genome browser
AA seq
1447 aa
AA seq
DB search
MALSKQEQFEKLLEQIDYADPHLTGGAIDQVVVHQQSRVWELHLHLREVLPLAVFTQLEQ
KTAVSFHQLAKAQVRFEITTDQGELVPNLISDYWPYVVRMVAGNSPMAQEICLKTSPELD
DGRVSLLMENEAVEQIFATKLLGKIEEGYQQVGFPAFHIHTLVDQSASQAKIEELKAKQQ
KADEELVKQARTQIEQAKQKRQATASAAPDGPIVIGRKLGPNDQVTRMATITEEESQVVV
EGYVFAKEIKELRSERQILILEITDYTSSFSVKMFSDRRGTNKPLFAALEKGMWVKVRGS
VQEDTYMRDLVINARDINEVSHQERQDTAPADQKRIELHLHTTMSTMDATNTIGEYVKQA
IKWGQPAIAITDHAGLQGFPEAFSSSYDGKKDESKIKMLYGVEANVVDDGVPLVYNENHL
PLKGQPYVIFDIETTGLSAIYDRIIQVSAVKMQDGEVLDHFDQFIDPGFHLSEQTTALTS
ITDDMVQGSKTEEEVLKLFDDFADGSLLAGHNVSFDMGFMNVAYERHGMGQIKQPVIDTL
PLARFLHPDFRGYRLNTLSKRFKVSLEHHHLASYDSEATGHLLAIFLKDAEERYGVTYVD
DLNKHMTDNGAYRHARPFHVTILAATQAGLKNLYKLVSLSNVEYFARVPRIPRSVLNRYR
EGLLLGTACADGEVFTAMMQKGYGEAKRLAEFYDYIEVQPKPNYAPLLESGVITDQAHLE
DILKNMVKLGSALNKPVVATGDAHYINPEDAIYRKILINSQGGANPLNRTERPDVHFRTT
DEMLDLFSFLGEDVAKQIVVDNTHLVTDMVDDGIRPVKAGLYPPHMEGAEQEIQDRTWTT
AKEWYGDPLPQLVKDRVELELNSIVSNGFSVHYLIAQRLVAKSTKDGYLVGSRGSVGSSV
VATLSGITEVNPLPPHYRCPNCQYSHFYTKGEYSSGFDLPDKDCPKCGTKMIGDGHDIPF
QTFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGENNVYRAGTIGTVADKTAYGYVKAY
ERDKEVQFRGAEEDRLASGATGVKRTTGQHPAGIIIVPDDMEIYDFTPVQYPADDQSAAW
ETTHFDFHSIHDNILKMDILGHDDPTMIRALQDLSGINPQSIPMDDPGVMSLFSSPEALG
VTEEQINSKTGTLGLPEFGTRFVRGMLEDTHPQNYSQLLQISGLSHGTGVWLDNAQELIK
NGTATIANVIGCRDNIMTDLIHYGLDSETSFQVMEHVRKGKGIPEEWQEKMTEVGVPQWY
LDSCLKIKYMFPRAHAAAYVLMALRIAYFKVYFPLVYYAAFFSVRADDFDVVAMSHGKEA
VKSAMQAITSKGNEATAKEKSLLTILELANEMLERGFKFKMVDIERSDATDWLIDGDTLI
APFRAIPGLGINVAKQIVAAREEKPFLSKQDLSERGKVSKTLIEFMTVNHVLDQLPDENQ
LSLFDML
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
gtggccctaagcaaacaggaacagtttgaaaagttactggagcaaattgactatgccgac
ccccacttaacgggcggggcgattgaccaagtggtggttcaccagcagtcacgggtgtgg
gagttgcaccttcacttaagggaggtcttgccgctagccgtcttcacccaactggaacaa
aaaacggcggtttcctttcaccaactggccaaggcccaggtccgctttgagatcacgacc
gaccaaggggagctggtcccaaacttgattagcgactactggccttacgtggtccggatg
gtggccggcaattcgccgatggcccaggaaatctgcttaaagacctcgccggagctcgac
gacgggcgggtgagcctgctgatggaaaacgaggccgtcgaacagatctttgccaccaag
ctcctaggcaagatcgaggagggctaccagcaggtgggctttccggcctttcatatccac
accctggtcgaccagagtgcgtcccaagccaagattgaggaattaaaggccaagcaacaa
aaggccgacgaggagctggttaaacaggcccgcacccagatcgaacaagccaagcaaaag
cgacaggcgaccgccagtgcggcccccgacggcccaattgtgatcggcagaaagctcggg
ccgaacgatcaggtgacccggatggccacgatcaccgaagaggagagccaggtggtcgtc
gaagggtacgtctttgccaaggagatcaaggaactgcgctcggagcgccagatcctgatc
ctagagattaccgattacacctcctcgttttcggttaagatgttctccgaccggcggggg
accaataagccgctctttgccgccctggaaaaggggatgtgggtcaaggtccgcggttcg
gtgcaagaagacacctacatgcgcgacctggtgattaacgcccgcgacattaacgaggtc
tcccaccaggaacgccaggacacggcgccggccgaccaaaagcggattgagttacacctc
cacaccaccatgtcgacgatggacgccaccaacacgatcggcgaatacgttaagcaggcg
attaagtggggccaaccggcgatcgccattaccgatcacgccggcttacagggcttcccg
gaggcctttagctcctcgtacgacgggaaaaaggacgaaagcaagattaagatgctctac
ggcgtcgaggccaacgtggttgatgacggggtgccgctggtttataacgaaaaccacctg
ccgctcaagggccagccctacgtgatcttcgacattgaaacgaccgggctgtcggccatc
tacgaccggatcatccaagtttcggccgtcaagatgcaagatggcgaggtcttagaccac
ttcgaccaattcatcgatccgggtttccacctgtcggaacaaacgaccgccctgacctcg
atcaccgacgacatggtgcaggggtccaagaccgaagaagaggtcctcaagctctttgac
gactttgcggacggctcgctgttagccgggcacaacgtctcctttgatatgggctttatg
aacgtggcctacgaacggcacgggatggggcaaatcaagcagccggtcatcgacaccttg
ccgctggcccgcttcttgcacccggactttcgcggttaccgcttgaacaccctgagcaag
cgctttaaggtctccttggagcaccaccacttggcctcttacgactccgaagccaccggc
cacttgctggcgatctttttaaaggacgccgaggagcgctacggggtgacctacgtcgac
gacttgaacaagcatatgactgacaacggggcttaccgccacgcccggccgttccacgtc
accatcttggcggcgacccaggctggcttgaagaacctttacaagctagtttctttgtcc
aacgtcgagtactttgcccgggtaccccggattccgcgttcggttttgaaccgctaccgg
gaggggctcttgctcgggaccgcctgtgccgacggggaagtcttcaccgccatgatgcaa
aagggttacggcgaggccaaacggttggcagaattttacgattacatcgaggtccagccc
aagcctaattatgctccgctgttagagagtggcgtgatcacggatcaggcccacttagaa
gacatcttaaagaacatggtaaaactcggcagcgccctgaataagccggtcgtggccacc
ggggacgcccactacattaaccccgaagacgccatttaccgtaagattctgatcaactcc
caggggggtgccaaccccttgaaccggaccgagcgccccgacgtgcacttccggaccacc
gacgagatgctcgacctcttctccttcctgggcgaggacgtcgccaagcagattgtcgtt
gataacacccacctggttaccgacatggtcgacgacgggatccgcccggttaaggccggc
ttgtacccgccgcacatggagggggccgaacaagaaattcaggaccggacctggacgacg
gccaaggaatggtacggtgacccgctgccgcaactggttaaggaccgggttgaattggaa
ctgaactcgattgtttccaacgggttctcggtccactacttgatcgcccagcggctggtg
gccaagtcaactaaggacggctacctggtcgggtcacgggggtcggtcggctccagtgtg
gtcgccactttgtctgggatcaccgaggttaacccactaccgccgcactaccgctgcccg
aactgtcagtactcgcacttttacaccaagggggaatactcctcgggctttgacttgccc
gacaaggactgcccgaagtgtgggaccaagatgattggtgacggccacgacatccccttc
caaaccttcttgggctttaaggggaataaggttccggatatcgatttgaacttctcaggg
gactaccaaccgatcgcccacaactacatgaaggtcttgttcggtgaaaataacgtttac
cgggccggcacgatcgggacggtcgccgataagaccgcctacggttacgtcaaggcctac
gaacgcgacaaggaagttcagttccgcggcgccgaagaggaccggctggccagcggggcg
accggggtcaagcggacgaccggccagcacccggccgggatcatcatcgtgcccgacgac
atggaaatttacgacttcacgccggttcagtacccggccgacgaccaatcggcggcctgg
gaaacgacccacttcgatttccactcgatccacgacaatattttgaagatggacatcctg
ggccacgatgacccaaccatgatccgggccctccaggacctgtcggggatcaacccgcag
tcgatcccgatggacgaccccggggtgatgagcctcttctccagccccgaagcgctcggg
gtgaccgaagaacagatcaactccaagaccgggacgctcgggctgcccgaatttgggacc
cgctttgtgcgggggatgctagaagacacccacccgcaaaactattcccaactcctgcaa
atttccgggctctcccacgggaccggggtgtggctcgataacgcccaggaactgattaaa
aacggcaccgccacgattgccaacgtgatcgggtgccgggataacatcatgaccgacttg
atccactacgggttggattcggaaacctctttccaggtcatggaacacgtccgtaaggga
aaggggatccccgaagagtggcaagagaagatgaccgaagtcggcgtgccgcagtggtac
ctcgactcgtgtttgaagatcaagtacatgttcccgcgggcccacgcggccgcctatgtc
ttgatggccctgcggattgcctactttaaggtctacttcccgctggtttactacgccgcc
ttcttctctgtgcgggccgatgactttgacgtcgtcgccatgagccacggcaaggaagcc
gttaagtcagcgatgcaagcaattaccagcaagggcaacgaagccacggccaaggaaaag
tcactgctgacgatcctggagctggctaacgaaatgctggagcggggctttaagtttaag
atggtcgacatcgaacgctccgacgccaccgactggttaattgatggcgacaccctgatt
gcgccgttccgggcgatcccggggctcgggatcaacgtggccaagcagatcgtggccgcc
cgggaggaaaagcccttcttgtccaagcaagacctctccgaacgggggaaggtctccaag
accttgatcgagtttatgaccgtcaaccacgtcctagaccaactcccagacgaaaaccag
ctgtccttgtttgacatgctgtaa
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integrated database retrieval system
