Lottia gigantea (owl limpet): LOTGIDRAFT_102163
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Entry
LOTGIDRAFT_102163 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
lgi
Lottia gigantea (owl limpet)
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lgi03016
]
LOTGIDRAFT_102163
Enzymes [BR:
lgi01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
LOTGIDRAFT_102163
Transfer RNA biogenesis [BR:
lgi03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
LOTGIDRAFT_102163
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
20229575
NCBI-ProteinID:
XP_009044216
JGI:
102163
UniProt:
V4BCZ7
LinkDB
All DBs
Position
Unknown
AA seq
540 aa
AA seq
DB search
MSQVYSTNQLFCRQTVNMPTDCEKTIDDIEDIISANDVTVEDRIKAKKHVMPRAKKHLKD
KNKSTNLKVVGDSYIPGNQSIFVKTWGCSHNNSDSEYMAGQLATYGFKITESKEDADLWL
LNSCTVKNPAEDHFRNDITLANKLDKHVVLAGCVPQGHQKSEYMQGLSAIGVQQIDRVVE
VVEETLKGNTVRFFSQKKESGKKTGGATLDLPKIRKNPLIEIIAINTGCLNQCTYCKTKH
ARGELGSYRPEAIVERARQSFKEGVVEVWLTSEDLGAYGHDIGVTLPQLLWQLVEVIPEG
ARMRLGMTNPPYILEHLEEMAKILKHPRVYSFLHVPVQTASDSVLMDMKREYCVEDFKHV
VNFLKTRVLDVTIATDLICGFPTETEEDFEETMQLVDEYRFPSLFINQFFPRPGTPAAKM
PQIDRQIIKQRTKRVSELFQSYQPYNHKLGQVQSVLVTEISHDGQYYVAHNKSYDQVLVP
KEEDLMGKMLEVEIIETGKHFMKGRLLTRGKRPLNVPPPMKKGEVSGKPVVSYSEVRVLF
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggtttattctactaatcaacttttttgcagacaaactgtcaacatgcctaca
gactgtgaaaaaaccatcgatgatatagaagacataatatctgccaatgatgtaactgtt
gaagataggataaaagccaagaaacatgtgatgcctcgagcgaagaaacacttgaaagac
aaaaataaatcaactaatttaaaagttgtaggagacagttatattccaggtaaccaatca
atatttgttaaaacctggggatgttcacataataattcagatagtgaatacatggctggc
cagctagccacttatggctttaaaatcacagaatctaaagaagatgcagatctgtggtta
ttaaatagttgtacagtcaaaaatcctgcagaagatcattttcgtaacgacataacccta
gctaataaacttgataaacatgtagttttggcaggctgtgtaccacaaggacatcagaag
tctgaatatatgcagggattaagtgctataggtgtccaacaaattgacagagttgtagaa
gtagtagaggaaacattaaaaggcaacacagtgagattttttagtcagaaaaaagaatct
ggtaaaaagacaggaggagcaactcttgatttacccaaaatcagaaaaaatcccctaata
gaaatcattgccatcaatactggttgtttaaatcaatgtacatattgtaaaacaaaacat
gctcgtggtgaactgggcagttacagacctgaagccattgtagagagagctagacagtct
tttaaagaaggagtagttgaggtatggctaacatcagaagatttgggagcatatggtcat
gatataggggtcactctacctcagttactatggcaactggtagaagttatacctgaaggt
gccagaatgagattgggaatgaccaatccaccatatattttagaacatttggaggaaatg
gctaaaatattaaaacatccgagagtttattcctttctacatgtaccagtacagacagct
tctgatagtgttttaatggacatgaagagagaatattgtgtggaagattttaaacatgtc
gtcaattttcttaaaacaagagtactggatgtaactatagcaacagatttaatttgtggt
tttccaacagaaacagaagaggattttgaagaaacgatgcagttggtagatgaatacaga
tttccaagtttatttattaatcaatttttccctcgaccaggaacacctgctgctaaaatg
cctcaaatagacagacaaataataaaacagagaacaaaaagagtatctgaattatttcag
tcttatcaaccttataatcataaattaggtcaagtacagtcagtcttagtaactgaaata
tctcatgatggacaatattatgtagcacacaacaaatcatatgatcaggttttagttcct
aaagaagaagatcttatgggtaaaatgttggaagttgaaataattgaaactggaaaacat
tttatgaaagggagattactcacaagaggaaagagaccactgaatgtacctcctccaatg
aaaaagggggaagtttctggtaaaccggtggtgtcttacagtgaggtaagagttttattt
tga
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