Lottia gigantea (owl limpet): LOTGIDRAFT_143393
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Entry
LOTGIDRAFT_143393 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LOTGIDRAFT_143393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lgi03400
]
LOTGIDRAFT_143393
DNA repair and recombination proteins [BR:
lgi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
LOTGIDRAFT_143393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
20234682
NCBI-ProteinID:
XP_009052104
JGI:
143393
UniProt:
V4A064
LinkDB
All DBs
Position
Unknown
AA seq
1244 aa
AA seq
DB search
DVVWAKLEGYPWWPSLICNHPTLEKFFKGGKTPEVHVQFFDNPTSRAWVKVRNIRPFKGS
KDVECQKGGVFYTVNTSIFGPGLEQGDKALEMERSKRSELLVELQPSTEIFDDEMSENEG
NNSKENHNNSTEVTTEKKVFKRNSRPERSVKSQKKRRRIMPSADSDEESGDEFKPASDDS
GDESASSGVDEDDVSDADVHSEPESPKRKRESQPNRNKKVKKEDDNSEKKSSYQPNVSIN
TKSKLSLFSAPDSVRNLCRVNESGSGDGNNFPHLKFDFLQPENIRDIKGRKKSDPEYDPR
TLHLPDGFLKKQTPAMRQWWELKSQYFDTVLFFKMGKFYELFHMDSVIIVNELGLIYMKG
DYAHSGFPEIAYNRYADALIGKGYKVGRCEQTETPDMMAERCKQTCGATKFDKVVKRELC
QIATQGTKTYQHLDGDCTSSQSTYLLAIAEKCNSSDDCSLYGVCFVDTSIGLFHIGQFKD
DRHCSRLRTLIAHYCPSQVLYERNKLSQHTNSLLNTNLTSVIKESLSSGSEFWDSSKTLK
FLAEGDYFKENDEFVWPNILKTMLADGDSMGMTASDNYELAISSLGAMTWYLQYCLLDEE
LLSMRKFEEYKPLDETVKSKDRSAVLNQKHMVLDGITLTNLDVAENTVYGDQQGTLLQQL
NFCSTPFGKRLFRNWLCAPLCRTEGINDRLNAVEDLMANPELTEDIVEILKKLPDIERLL
SRIHVLGSANRSKSHPDSRAILYEEVTYSKKKIEDFLSTLGAFKSSLNIIKQCKKSSDNF
KSKILKKSVTMETDGGHFPDIHESLKFFDAAFDHDKARKDGIIIPSKGVDEEYDTATVDI
LSIEDKLNSYLDSQRKALSCRAMVYWGSGKNRYQMEVPEVAVCRVPNNYELMSSKKGWKR
YRTTEIEEMFTELTDAEDRKDTALKDVMRRLFYSFDERHKKWSGVVECLSVLDVLVSMCK
YSQCTDGAMCRPEFITPDTDTEAFIEIREGRHPCICRTFGGSDFIPNDTVIGIKDEEDEE
TSCHDNSKVVLVTGPNMGGKSTLMRQVGLITIIAQMGCYVPAEKCRLTPIDRIFTRLGAS
DRIMSGESTFFVELSETSSILQHATKHSLVLVDELGLGTATYDGTAIACSVVEELSQNIS
CRTLFSTHYHSLVEQFSHDHNVRLGHMACMVENETEDPSQETITFLYKFIKGACPKSYGF
NAARLADLPEEVRDTIIFCFEYTSLQARQFHKSKILSKQCQNGE
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
gatgtggtgtgggccaagttagaaggatatccatggtggcctagtttaatttgcaatcat
ccaacattggaaaaattcttcaaaggagggaaaactccagaggttcatgttcaatttttt
gacaatccaactagtagagcttgggtcaaagtaagaaatataaggccatttaaaggatct
aaagatgttgaatgtcagaaagggggagtgttttatacagttaataccagtatatttggt
ccaggtttagagcaaggtgataaagctttagaaatggagagatctaagagaagtgagtta
ttagtagaattacaaccttctactgaaatattcgatgatgagatgagtgaaaatgaaggt
aataatagtaaagaaaaccataataactcaacagaagttacaactgaaaaaaaggttttc
aaaagaaatagtagaccagaacgttcagtaaaatctcaaaagaagagaagaagaattatg
ccctctgctgacagtgatgaggaatctggtgatgagtttaaacctgctagtgatgatagt
ggagatgagtcagctagttctggtgttgatgaagatgatgtttcagacgctgatgtacat
tcagaaccagaatcaccgaaaagaaaacgtgaaagtcaacctaacagaaataagaaagtt
aagaaggaagatgataatagtgagaagaaatcgagttatcaaccaaatgtatctattaat
accaaatctaaactgtctctattctcggcacctgactcggtaagaaatttgtgcagggtc
aatgaatctggtagtggagatggtaacaatttccctcatcttaaattcgacttccttcaa
ccagaaaatatcagagatattaaaggaagaaagaagtctgatccagaatatgatccacga
actcttcatcttcctgatggcttccttaagaaacaaactccagctatgagacaatggtgg
gaactaaaatcacaatattttgatacagtcttatttttcaagatgggtaaattttatgaa
ttgtttcatatggactctgtgattattgtcaatgaattaggtctgatttatatgaaggga
gattatgctcattcaggatttccagaaatagcgtataatcgttacgctgacgctctaatt
ggtaaaggatataaagtaggtcggtgtgagcagacagaaacaccagatatgatggctgaa
agatgtaaacaaacttgtggagctactaagtttgataaagtagttaaaagagagttatgt
cagatcgctactcagggtactaaaacataccaacatttagatggtgattgtactagttca
caaagtacctatttactagctatagctgaaaagtgtaacagtagtgatgattgtagtttg
tatggtgtatgttttgttgatacatcaataggactctttcatattggtcagtttaaagat
gaccggcattgttctagattacgaacattaatagctcattactgcccctctcaggtttta
tatgaaagaaataagctgtctcaacataccaatagcctcctcaataccaatcttacctcg
gtcattaaagagtccttgtcgtccggtagtgaattctgggatagcagtaaaacattgaaa
ttcctagcagaaggtgattacttcaaggaaaatgatgaatttgtgtggccaaacatctta
aaaacaatgttagctgatggtgacagtatgggtatgacagctagtgataactatgagcta
gctataagttctctaggagctatgacttggtatctacagtactgtttactggatgaagag
ttattgtctatgagaaagtttgaagaatataaaccattagatgaaactgttaaatctaaa
gatagatctgctgtacttaatcaaaaacacatggtattagatggtattacactgactaat
ttagatgttgcagagaatactgtgtatggtgatcaacaagggacattactccaacagctt
aacttctgctcaacaccttttggtaaaagattatttagaaattggctatgtgctccattg
tgtcgcactgaaggtataaacgatagattgaacgctgtagaagatttgatggctaatcca
gaattaacagaagatattgtagaaatactgaaaaaactaccagatatagaaagattactt
agtcgtatccatgtattaggatcagctaatcgtagtaaaagtcacccagatagtagagct
atattatatgaggaagttacttacagcaagaagaaaatagaagattttttaagtactctt
ggagcttttaaatcctcattgaacatcattaaacaatgtaaaaaaagttcagacaacttc
aaatcaaagatattaaaaaagagtgttaccatggaaactgatggcggccattttcctgat
atccatgaaagtttgaaattttttgatgctgcatttgaccatgataaagctcgtaaagat
ggtattattatacctagtaaaggagtggatgaagaatatgatacagctactgttgatatc
ttatctattgaagataaactcaattcctatcttgattctcagagaaaagctttaagttgt
agggcgatggtatattggggtagtggtaaaaacagatatcaaatggaagtacccgaggta
gctgtttgccgagttcccaataattatgaattgatgtcatcaaagaaaggttggaaacga
tatagaactacagaaatagaagaaatgtttacagaactaacagatgctgaagatcgtaaa
gatacagctctcaaagatgtcatgagaagattgttttatagttttgatgaaagacataag
aaatggagtggtgtggtagaatgtttatctgtattagatgtattagtatctatgtgtaaa
tatagccaatgtacagatggtgccatgtgccgtcctgaatttattacaccagatactgat
acagaggcttttatagagataagagaaggaagacatccttgtatctgtagaacatttggt
ggtagtgattttatacctaatgatacagttataggaatcaaagatgaagaagatgaagaa
actagttgccatgacaacagtaaggtagtcttagtaacaggaccaaatatgggtggtaaa
tctaccttaatgagacaagttggtttgataacaatcatagctcaaatgggatgttacgta
ccagctgagaaatgtagattaacacctatagatagaatatttaccagactaggagctagt
gatagaattatgtcaggtgaaagtacattttttgtggagttaagtgaaacatcatctata
ttacaacatgcaaccaaacattctttagttttagttgatgaattaggtctaggaacagct
acctatgatggtacagctatagcttgttcagtagtagaagaactatctcaaaacatctcc
tgtcgaactctcttctcaactcactatcattcactagtagaacaatttagtcatgatcac
aatgtccgactaggtcacatggcatgtatggtagaaaatgaaacagaagacccttcacaa
gaaacaatcacatttctatataaattcatcaagggagcatgtcctaaaagttatggattc
aatgctgcaagactggctgatttgccagaagaggtaagagatacgattattttctgtttt
gaatatacatcccttcaagcaagacaatttcataaatcaaaaatcttgtccaaacaatgt
caaaatggggagtaa
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integrated database retrieval system
