Lottia gigantea (owl limpet): LOTGIDRAFT_226039
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Entry
LOTGIDRAFT_226039 CDS
T03273
Name
(RefSeq) hypothetical protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lgi
Lottia gigantea (owl limpet)
Pathway
lgi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LOTGIDRAFT_226039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgi03019
]
LOTGIDRAFT_226039
Enzymes [BR:
lgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
LOTGIDRAFT_226039
Messenger RNA biogenesis [BR:
lgi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
LOTGIDRAFT_226039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
MMR_HSR1
nSTAND3
TniB
ABC_tran
Motif
Other DBs
NCBI-GeneID:
20247327
NCBI-ProteinID:
XP_009049132
JGI:
226039
UniProt:
V4A872
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MAEEVTGEGTKFDLKPNDELRFEVETKQTVVMEMTHGKGEVFGAELAKNKKYKFNSGAKV
AVYTWHGCQIKISFPNLVGTTEVAYISKETPMLMYLNTHAALEQMRLKADEENMRGPRAI
IVGPTDVGKSTLCRILCNYAARLGRAPIFADIDVGQGQTDIPGTIGALSVERPSDVEEDY
SQLSPLSFHFGHKTPQTNTALYELLIQRLAEVINMRSEKSKRTNVSGVIINTCGWIRGAG
YELIKNTAGAFEVDLVMVIDQERLFNELKRDLPHFVHVVLLPKSGGVVERSQSSRGEARD
AKIREYFYGIDNSLYPHNFEVKFTDVKIFKIGAPVLPESCLPLGMKAEDNKTKQVPVMPS
MSLLHHVFSVSAANSPEDNVVETNVLGYVVITAIDMEKQCFTVLAPSPRPLPKNILLMMD
LQFMDIK
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggaagttacaggagagggtacaaagtttgatctgaagccaaatgatgaatta
agatttgaagtagaaactaaacaaacagttgtaatggagatgactcatggaaagggtgag
gtttttggggctgaattagctaaaaataagaaatacaaattcaattctggtgcaaaagta
gctgtctatacatggcatggctgtcaaattaaaatatcctttcctaacctggtaggaaca
acagaagtagcatatatatctaaagaaacaccaatgttaatgtatttgaatacacatgct
gctcttgaacagatgagactcaaggctgatgaagaaaatatgagaggacccagagctata
attgttggtcctactgatgtaggtaaaagtacattatgtagaatactgtgtaactatgct
gccagactaggaagagcaccaatatttgctgatattgatgtaggtcaaggacaaacagat
attccaggaacaataggagcattatctgttgaacgtccatctgatgttgaagaagattat
tcccagttatctcccttatcatttcattttggtcacaaaacaccacaaacaaatactgcc
ttgtatgaattattgatacaacgtctagcagaagtcatcaatatgagaagtgaaaagagt
aaaagaactaatgtaagtggtgttattataaatacatgtggttggataagaggagcaggt
tatgaacttatcaaaaatactgctggtgcatttgaagttgatttagtgatggtgatagat
caagaaagattatttaatgaattaaaaagagatttaccccattttgtccatgttgtttta
ttacctaaatctggaggggttgtggaaagatcccagagttctcgaggtgaagctagggat
gctaaaataagagaatatttctatggtattgataatagtttatatccacacaatttcgaa
gttaaatttacagacgttaagatcttcaaaattggagcaccagttttaccagaatcatgt
ttaccattaggtatgaaagcagaagataataaaactaaacaggttcctgttatgccttct
atgtcattattacaccatgtatttagtgttagcgctgccaattcaccagaagataatgtt
gtagaaaccaatgttttaggatatgttgtcattactgcaattgatatggagaaacaatgt
tttacagtgttagccccatcacctcgtccattacctaaaaatatcttattaatgatggac
ttacagttcatggacataaaatag
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