Leguminivora glycinivorella (soybean pod borer): 125225673
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Entry
125225673 CDS
T09956
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03020
RNA polymerase
lgly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125225673
09124 Replication and repair
03420 Nucleotide excision repair
125225673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lgly03021
]
125225673
03400 DNA repair and recombination proteins [BR:
lgly03400
]
125225673
Enzymes [BR:
lgly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125225673
Transcription machinery [BR:
lgly03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125225673
DNA repair and recombination proteins [BR:
lgly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125225673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
125225673
NCBI-ProteinID:
XP_047985443
EnsemblRapid:
ENSLGLG00000004399
LinkDB
All DBs
Position
4:complement(13953963..13964256)
Genome browser
AA seq
1900 aa
AA seq
DB search
MATNDSKAPLRQVKRVQFGIISPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVI
DRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPK
IKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEAKKGSGHGGCGHYQPSI
RRQGLDLSAEWKHVNEDTQERKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIVT
VLPVPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELQRNEQSGAAAHVLADNIRMLQ
FHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDP
NLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLRF
HPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSP
YNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKR
DVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMIRTHSTHPD
EEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYGN
IQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPGN
TLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQ
NVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTA
VKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKL
SNKAFEKKFKFDPSNERYLKRIFNEEIIKELTESAYVIADLESEWEQLNKDREVLRQIFP
SGESKVVLPCNFKRMIWNVQKIFHINKRMPTDLSPIKVIQGVKDLLKKCVIVAGEDRLSV
QANENATLLFQCLVRSTLCTKFVAEEYRLSSEAFEWLIGEIETRFQQAQVNPGEMVGALA
AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDA
EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPWL
LRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQD
NDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTEAKKRIIITEQGEFKA
IAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG
LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDP
MRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGGGMYFGVGTPSMTP
LMTPWSTQNTPGYGSSVWSPGQVGSIMTPGGPSFSPSGASDASGLSPAYSAWSPQPGSPG
SPGPPLSPYASPGASPSYSPTSPVYAAASPSLTPASPHYSPTSPSYSPTSPNYSPTSPIY
SPASPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPAYSPASPGYSPSSPSYSPTSPVYSPASPSYSPSSPNYTPTSPAYS
PTSPSYSPTSPAYSPTSPSYSPSSPKYSPTSPNYSPTSPSIAGGSPTYSPTSPQYSPTSP
QYSPASPAYSPSSPQHPGSTRYSPSSPNYSPSSPNYSPSSPGYSPSSTKYSPTSPTYTPT
SPNYSPSSPAYSPSSAGPTSYSPTSPNYSPTSPSYNEDDD
NT seq
5703 nt
NT seq
+upstream
nt +downstream
nt
atggctacgaatgactccaaggcgcctttgcgccaagtaaaaagggtacagtttggtata
atttcgccagatgaaatacgacgtatgtcagtcacggaagggggtatccgcttccccgaa
accatggaaggcggaaggcccaagcttggaggcctcatggatcctcgacaaggggtgatc
gacagaagctcccgatgccagacgtgtgctggcaacatgactgaatgccctggacacttt
ggccatattgatctagccaagccagtatttcacattggtttcataacaaaaactataaaa
atattaagatgtgtttgtttctattgttcaaaactgcttgttagtccgacaaatccaaag
ataaaagaagttgtgatgaagtcaaaaggacagcctcgtaaaagattaacttatgtgtat
gacttatgtaaaggcaaaaacatttgtgagggtggtgaagacatggatatagggaaagaa
ggggaggaggctaagaaaggctcgggccatggaggttgtggtcattaccagccttcaatc
aggagacagggacttgacctttcagctgaatggaaacatgtcaatgaagacacacaagag
agaaagatcatcattactgctgaaagagtttgggaaattctaaaacacattactgatgag
gagtcctttatcctgggaatggatccaaaatttgccagacctgattggatgatagtcaca
gttcttcctgttccaccattgtcagtgcgaccggctgtggtcatgtttggggctgccaag
aatcaggatgatctgacacacaaacttgctgacatcatcaaagcaaacaatgagttacaa
agaaacgaacagtctggggctgccgctcatgttctcgctgacaacattagaatgcttcag
tttcatgtggccacttttgttgataatgacatgcctggtatgccaaaagccatgcaaaaa
tctggtaaaccacttaaagcaatcaaagcacgactgaagggaaaagaaggaaggattcga
ggaaatctcatgggaaaacgtgttgatttttcggcacgtactgtcattacaccagatccc
aacttgcgtattgatcaagtaggagtaccacgatcaattgctcaaaacttaacattccca
gagttagtaacaccattcaatatagacagaatgcaggagcttgtacgacgaggcaatgct
caatacccaggggccaagtacattgtccgggacaatggagagaggatagacttgagattc
caccctaaaccatcagatttgcatttacaatatggatacaaagtcgagcgccatctgaga
gatgacgacttggttattttcaatcgtcagccaacactacacaaaatgagtatgatgggt
cacagagtaaaagtactgccatggtcaacatttcgtatgaatttaagttgcacttcacct
tataacgccgattttgacggagacgaaatgaacttgcatgtgccccagtccatggagact
cgtgctgaagtagaaaacattcacataacacctcgacagattattactccacaagctaac
aaacccgtcatgggtattgtgcaggacactcttactgctgttcgaaaaatgactaagaga
gatgttttcttgacaaaagaacaggtcatgaaccttctgatgttcttacccacttgggat
ggtaaaattcctcagccttgcattttgaaaccccagccattatggactggaaagcaaata
tttactctgatcatcccaggcaacgtcaacatgattcgcacgcattccactcatcctgat
gaagaagatgatgggccttacaaatggatttcccctggagatactaaagtagtagtagag
catggagagctcctcatgggaatattgtgtaaaaaatcacttggtgcctctgctggttct
cttctgcacatttgcatgttggagctgggccatgaaactgctggacgattttatggtaat
attcaaactgtgattaacaactggctcttgctggaaggccattccattggtattggagac
actattgccgatccgcaaacatatcaagaaattcagcgcgctatagttaaagctaaggat
gatgtaatagaggtcattcaaaaagctcacaacatggaattggagcctactcctggtaat
accttgaggcagacattcgagaatcaagtgaatcgtattcttaatgacgctcgtgacaag
actggtggatcagctaagaaatcactgactgaatacaataacctcaaagctatggtggta
tcaggtgccaagggatccaacattaacatttcccaggttatagcttgcgtgggacaacaa
aacgttgaaggtaaacgtattccattcggttttagaaagagaactctaccacacttcatc
aaagacgattatggtcccgagtccagaggttttgtagaaaattcgtatcttgccggtcta
accccctcggagttctatttccacgccatgggaggtcgtgaaggtcttattgatactgcc
gtaaagaccgctgaaactggttatatccaacgtcgtctcataaaggctatggagtctgta
atggttcactacgacggaaccgtgcgtaactccgtcggacagctcattcagttgagatac
ggcgaggacggcctggctggagaaactgtagagttccaaaatctaccaactgtgaaatta
tcgaacaaggcctttgaaaagaaattcaaatttgacccttcaaatgaacgatacctaaag
agaatattcaatgaagaaattattaaagagctcacggaatccgcatacgttattgccgat
cttgaaagcgaatgggagcaactcaataaggacagagaagtgttgcgtcagatcttcccc
agtggagaatctaaagttgtactcccatgcaacttcaagagaatgatctggaatgttcag
aagattttccatataaacaaacgtatgccaacagacctaagtcccatcaaagttatacaa
ggagtcaaggaccttttgaaaaaatgtgtcattgtagctggcgaagatcgcttatcagta
caggctaatgaaaacgctactttattgttccaatgtctcgtgagatctacactttgcaca
aagtttgttgctgaagaatacagattatcaagtgaggcatttgagtggttgattggagaa
attgagactcgcttccaacaggctcaagttaacccgggagaaatggtgggcgccctggcc
gcgcaatctctgggagaacccgccactcagatgacactgaacactttccattttgctggt
gtgtcgtccaaaaacgtaacgcttggtgtgccacgtctgaaggaaattatcaatatttcc
aagaaaccaaaggcgccttccctaaccgtgtttttaacaggcggtgcggcacgtgatgct
gagaaagctaagaatgtactttgcaggctggaacacacaacattgcgtaaagttaccgct
aatacagctatttactatgaccctgaccctcaaaatacagttattgctgaagatcaagag
ttcgtcaatgtctactatgaaatgcctgactttgatcctacaaagatttcaccctggctt
ctacgtatagagttggaccgtaagaggatgacagataagaaacttaccatggaacagatc
gcagaaaagattaacgccggttttggagatgacttgaactgtatcttcaacgacgataac
gcagaaaagcttgtattgcgtatcagaatcatgaataacgaagaaagcaaattccaagat
aatgatgaagagacagtagataaaatggaagatgacatgttcttgcgctgtattgaagcc
aatatgttgtcagacatgacgctgcagggtatagaagcgatcggtaaagtatacatgcac
ttgcctcaaacggaggcgaagaaacgcattattatcactgaacagggagagttcaaggct
atcgccgaatggttattggaaactgacggtacttctctcatgaaagtattgtccgaaagg
gacgtcgatccgatcagaacgttcagtaacgacatttgcgaaatattccaagtgttgggt
atcgaggccgtgcgtaaatcagtagagaaggaaatgaacgctgtgctgcagttctacggt
ctgtacgtcaactatcggcatcttgcgttgctttgtgatgtcatgacggctaaaggtcac
cttatggctatcacccgtcacggtatcaatagacaagacactggcgcgctcatgagatgc
tcgttcgaggaaactgtagacgtgctgctggacgctgccagtcatgctgaagtggatccg
atgagaggagtgtcggaaaatattatcatgggacagttgccaagaatgggcacaggatgc
ttcgatttgctcctcgacgccgagaaatgcaagcacggtatggaaatgggcggtctcggc
gtcggcatgggcgtcggcggcggcatgtacttcggcgtgggcacgccgtctatgacgcca
ctcatgactccctggtctacgcagaacacgccgggctatggcagcagcgtctggtctcct
ggtcaagtgggaagcatcatgacgcccggcgggccgtcgttctcgccgtccggggcatcg
gacgcttcgggcctgtcgcccgcctacagcgcctggtcgccgcagcccggctcccccggc
tcgcccggcccgccgctgtcgccctacgcctccccgggcgcctcgccctcctactcgccc
accagccccgtgtacgccgccgcctcccccagcctcacccccgcctccccgcactactcg
cccaccagcccctcctactcgcccacctcgcccaactactccccgacctcccccatctac
tccccggcctccccgagctattcgcccacgtcgcccggctactcgccgacttccccgtca
tattcgcccacgtcccccagctactccccgacgtcgccgagctactcccctacgagcccg
gcctactctcccacatccccgagttactcgcccacttcacccagctactcaccgacgagc
ccctcctactcgcccacgagcccgtcttactctccgacgagtcccgcgtactcacccgcg
tctccgggctactcgccatcatcgccgagctactcgccaacgagccccgtctacagtccc
gcgtccccgagctattcgccctcgtcgccgaattacacgccaacatcccccgcgtattct
cctacgagtccgtcgtactctcccacttctccggcgtactctcccacttcgccgagctac
tcgccgtcgtccccgaaatattccccgacttcgccgaactattccccgacttccccgtcg
atcgcgggcggcagtcctacttattccccgaccagcccgcaatactcgccgacgagccct
cagtactcgccggccagcccggcgtactcgccctcgtcgccgcagcacccgggcagcacg
cgctactccccatcctccccgaactactctccgtcttccccgaactactcgccgtcgtcg
ccgggctactcgccctcgtcgaccaagtactcgccgacgtcgcccacttacactcctacg
tcacccaattactctccttcttcccccgcctactccccttcgtccgccggtccgacttcc
tattccccgacttcaccaaactactcgccgacttcaccatcgtataacgaagatgatgat
tag
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integrated database retrieval system
