Leishmania infantum: LINJ_16_1420
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Entry
LINJ_16_1420 CDS
T01112
Name
(RefSeq) putative DNA-directed rna polymerase I largest subunit
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lif
Leishmania infantum
Pathway
lif03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LINJ_16_1420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lif03021
]
LINJ_16_1420
Enzymes [BR:
lif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LINJ_16_1420
Transcription machinery [BR:
lif03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
LINJ_16_1420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
5068025
NCBI-ProteinID:
XP_001464622
UniProt:
A4HX31
LinkDB
All DBs
Position
16:complement(551242..556674)
Genome browser
AA seq
1810 aa
AA seq
DB search
MSLTTAFPFHAYVGDLRTRTVHERKSGVSLSLMTSEDMARLAFVEVRVRCGQEDRLAPWT
PALRRDGTHATFYDTRMGNFDARTFPPQACSTCCSTLNSKYGNERCQGHYGYISMPRRYP
NDPNRSQERLSVINPHLAQEVEQLLQAECFFCHRFRVPEFDVMRYQQALRLVDCGLIGEA
LRFLDMVANAHGQDMRSRRRRDANETVINDIPLMLDHVDKLLRRRGVAAPPLPEVASGEA
GAHGDAQGDAGAAGALAHVDGSDDGFRKPVLDVRNEICKQALRSFREFGNVCSHCQGISP
RITTKNGHLFFFFNKKNADFNVANGGVTTSQLREWEEMNRRQGRSHTYFRTSWVREHIKQ
LCQRESAILAALFPHLGETTLHMPYACSLPSMYYYKVFFVDKLLVPPLPLRLSSGVQISE
SGGIIPDAGTRALSDVLEFVEQIEAYYVLANNSTPERNLVSTAQEVAQEHNLRNLQAKVT
EVYTDVLEGFAKKEGLFRMHMMGKRVNQACRSVISPDYLVEPNEVLLPRPFARALTFPEL
VSSYSPARMVFLKRCVMNGPDVYPGATHLEIGLPSGETRFVDLHVPELIRRQHAMKYFAM
AQNGSLTVHRHILDGDHLIFNRQPTLHKVSMMAYRAKVLSGLKTLRFHYVNGSSYNADFD
GDEMNIHVVQSLEAKAELECLMDANLNYLVPTSGKPIRGFIQDHVVAGVLLTLRDNFLPH
HTFVQFVYNGIAPYMQKQGKPLSAHATLTGLIPMPAVLKPRPLWTGKQLISVIVHYVTGV
VESRGGAPRSNGVSMHGTSLIQPSTYTTTDPHTGELVTASRKCMEDDHVQFFESELITGI
LCKNQLGSSNLSVVHVIHEIYGPHMVGELFGALGRVLSMSLQREGFSIGMDDMMLLQEER
RTALLRELDSAPLSLPDDEARVMPVIMGMATSLQKEFVPGRMLRPFPYNQLLTMTMSGAK
GSNTNAIQMSLGLGQQLFDGRRVKRMNSGKTLPPFFVAEKRARSLGYAIGRFTSGIRPAE
YTFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVVQWDHSVRDANGSVIQFLYGGDG
LDPMRTSSLQAWEVVKDNCIDLGRKMNVNTGVVTGEEEAEEAASRNSQGKRERAHEAAAA
MRAAQRALLEAEAQRDPLPAHYKASLDMYLETKAQYPLFKKVSQVARWTKNGVLNEKLRE
KREESIRYYRDVMTELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVT
HVTEGIPRLRELLIYASVQKVAIVVPVEKATEVDEEAISRILQAGVATRLTDCMARVPAA
VTATADDGAAARAQTTPGYHYRVTRSAEGTQVTVALLFSKALLMQKQHAMCMSRAEHLQS
FTQTLKNFARQVVTALRGRSKDEREGAGGPLRGTTQDPSSQMDDGGAAAGGGMSDNEDDM
DERSTQMNTPALGATSVPSVAGSELGRDDMIPERDDNGGSSGSDEDDYDEEAVDAADGSR
RRKGGNGSSPPRKKSRAEEGDNEEDDEDVNGLFWKSSSNGGTSSEAAAAASGKVSYDCFP
TVCVMYGSKKYRVEIAPLLREAATRDGVVPLPEDLFVVNVSIQTSDQVVTVIPDVLESAL
AQQTFPSWLTQFDSVTYTRKAEDPTSGEMVFQGSSATIRSVTAFLALFTVRARAIKVQKA
RSTDIRDMCTSFGVESGYKALFDELEKLFKRYSVDYHHLTLIADAATHRGVWENYNFTGV
ISHSASPLFQMTFASSKRFLHTALTRGVGDELNSISSAIMVGERPRVGTALVKVGQDPQI
LRDVIEKNFA
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcaccaccgcctttcccttccacgcgtacgtgggcgacctgcgcacgcgcacc
gtccacgagcgcaagagcggcgtctccctctccctcatgacctccgaggacatggcgcgc
ctcgcgtttgtggaggtgcgcgtgcgctgcgggcaggaggatcggctggcgccatggaca
ccagctttgcggcgcgacggcacgcacgccacgttctacgacacacgcatgggcaacttc
gacgcacgcacgttccctccgcaggcgtgctcgacgtgctgcagcacgctcaactccaaa
tacggcaacgagcgctgccagggccactacgggtatatcagcatgccgcgtcgctacccg
aacgacccgaaccggtcacaggagcgcctcagcgtcattaacccgcaccttgcccaggag
gtggagcagctgcttcaagccgagtgcttcttctgccaccgcttccgtgtacccgagttt
gacgtgatgcgctaccagcaggcactgcgcctcgtcgattgcgggttgattggcgaggcg
ctgcggttccttgacatggtggcgaacgcacatgggcaggacatgcgcagtcgacgccgc
cgtgacgccaacgagactgtcatcaacgacatccctcttatgctggatcacgtcgataag
ctgctgcgccgccgcggagtcgctgcaccgcctctgcccgaggtcgcgtcaggcgaggcg
ggtgcgcacggcgacgcccaaggtgacgccggcgctgctggcgcgttggcgcacgtggat
ggcagcgatgacggcttccgcaagccggtcctcgacgtccgcaatgagatctgcaagcag
gcgctgcgcagcttccgcgagtttggaaacgtgtgctcgcactgccaaggcatctcgcct
cgcatcacgacgaagaacggccatctcttcttcttcttcaacaagaagaacgccgacttc
aatgtggcgaacggcggggtgacgacgtcgcagctgcgggaatgggaggagatgaaccgt
cgccagggccgcagccacacgtacttccgcacgtcgtgggtgcgagagcacatcaagcag
ctgtgccagcgcgagtccgccattctcgcggctctcttcccgcacctcggcgagaccacc
ctacacatgccgtacgcctgctcgctcccgtcgatgtactactacaaggtcttctttgtg
gacaagctgctcgtgccgccgcttcccctgcgcctgtcctcgggcgtgcagatctcggag
tccggcggcatcatccccgatgccggcacacgtgccctgtctgacgtgctcgagttcgtc
gagcagatcgaggcgtactacgtcctcgcgaacaactcgaccccagagcgcaacctcgtc
agcaccgcgcaggaggttgcgcaggagcacaacctgcggaacttgcaggccaaggtgacg
gaggtgtacacggatgtgctggagggctttgcgaagaaagagggcctgttccgcatgcac
atgatgggcaagcgcgtgaaccaggcgtgccgcagcgtcatctcacccgattacttggtg
gagccgaacgaggtgctgctgccccgccccttcgcccgcgcgctgacattcccggagctg
gtgagcagctactcgccagcgcgcatggtgttccttaagcggtgtgtcatgaacggcccg
gatgtgtacccgggcgccacacacctagaaattggcctgccgagcggcgagactcgcttc
gtggacttgcacgtgccggagctgattcggcggcagcacgccatgaaatacttcgcgatg
gcgcagaacggctccctcacggtccaccggcacatcctcgatggcgaccacctcatcttc
aatcgccagccgaccctgcacaaggtatccatgatggcgtaccgcgccaaggtgctgtcc
gggctgaagacactccgctttcactacgtcaacggcagctcgtacaacgccgacttcgac
ggtgatgaaatgaacattcacgtcgtgcagagcctggaggcaaaggcggagctcgagtgc
ctgatggacgccaacctcaactacctcgtcccgacgtccggcaagccgattcgcggcttc
attcaggatcacgtggtcgccggtgtgctgctgacgctccgcgacaatttcctgccgcat
cacacctttgtgcagtttgtgtacaacggcatcgcgccgtacatgcagaagcagggcaaa
ccgctcagcgcgcacgcgacgctgacggggctgattccgatgcccgcggtgctaaagcca
cgtccgctatggacgggcaagcagctcatctccgtgattgtacactacgtgaccggcgtg
gtggagagtcgtggcggtgcgcccaggagtaacggcgtcagcatgcacggcacctccctc
atccagccaagcacctacaccaccaccgacccccacaccggcgaactagtcactgcgtca
cgcaagtgcatggaggacgatcacgtgcagttctttgagagcgagctcatcaccggcatc
ctgtgcaagaaccagctcggctccagcaacctctccgtcgtgcacgtgattcacgaaatc
tacgggccgcacatggttggcgagctcttcggcgcgctcggtcgcgtgctgtcgatgagc
ctgcagcgcgaaggcttctccatcggcatggatgacatgatgctcttgcaggaggagcgg
cgtacggcgctgctgcgcgagctggacagcgcgccgctcagcctccccgacgacgaggcg
agggtgatgcccgtgatcatggggatggcgacaagcctccagaaagaattcgtgcctggg
cgcatgctgcggcctttcccgtacaatcagctgctcaccatgaccatgtccggtgcaaag
ggcagcaacacgaacgctatccagatgtcgctcggtctcggccaacagctcttcgacgga
cgtcgggtgaagcgcatgaactcgggcaagacgctgccgccgttcttcgtcgcggagaag
cgagcccgctcgctgggctacgcgatcggccgcttcacctccggtattcgaccggcagag
tacacctttcacgccatggccggccgtgatgggctcatcgacacggccgtcaagacttcc
cgctccggccacctgcagcggtgcctagtcaaaggcctggagagcctcgtcgtgcagtgg
gaccactccgtgcgcgacgccaacggcagcgtcatccagttcctctacggcggcgacgga
ctcgacccgatgcggacctcgtccctgcaggcgtgggaggtggtcaaggacaactgcatc
gacctcggtcgaaagatgaacgtgaacaccggcgtggtgacgggcgaggaagaggccgag
gaggcggcgtcgcgcaacagccagggcaagcgcgagcgcgcccacgaggcggccgcggcg
atgcgtgcggcgcagcgtgcgttgctcgaggcggaggcacagcgcgacccactccccgcc
cactacaaggcgagccttgacatgtacctggagaccaaggcgcagtatcctctcttcaag
aaggtatcgcaagtcgcgcggtggaccaagaacggcgtccttaacgagaagctgcgcgag
aagcgcgaggagagcatccggtactaccgcgacgtgatgacggagctcacgacgcggcgg
cgggtgcgggcgtactgcgacgctggagagccagttggtctcctggcggcgcaggccgcc
ggtgagccgtcaacgcagatgacgctcaacactttccacagcgccgggtccaccgtcacg
cacgtgacggagggaatcccgcgcctacgtgagctgctcatctacgcctctgtgcaaaag
gtggccattgtggtgccggtggagaaggcgacggaggtggacgaggaggcgatctcgcgc
attctgcaggccggcgtagcgacgcggttgacggactgcatggcccgcgtacctgctgct
gtcacagcgactgcggacgacggtgcagcggcgagggcgcagacgacgccggggtaccac
tatcgtgtcacccgcagcgccgagggcacacaggtgacggtggcacttctcttctccaag
gcgctgcttatgcaaaagcagcacgccatgtgcatgtcgagagccgagcaccttcagtcc
tttacgcagactctgaagaactttgcacggcaggtggtgacggcgctgcggggtcgctcg
aaggacgagcgcgaaggcgccggcgggccgctgcgtgggacaacgcaagacccgtcttcg
cagatggacgacgggggcgccgcggccggcggcggcatgagtgacaacgaggacgacatg
gacgagcgttccacgcagatgaacacaccggcgctcggggccacctcggtgccgtccgtc
gccggcagcgagctcggacgtgacgacatgatcccggaaagggacgacaacggcggcagc
agcggcagtgacgaggacgattacgacgaggaggcggtggacgcggcggacggctcgcgg
cggcgcaagggcggcaacggcagcagtcccccgcgcaagaagtctcgagcagaggaaggc
gacaacgaggaggatgatgaggacgtcaacggattgttctggaagagctccagcaacggc
ggcaccagcagcgaggcggctgccgcggcgtctggcaaggtgagctacgattgctttcct
acggtgtgcgtcatgtacggcagcaagaagtatcgggtggaaatcgcgccgctgctgcgg
gaggcggccacccgcgacggggtcgtgccgctaccggaggatctctttgtggtgaacgtg
tcgatacagacatcggaccaggtggtcaccgtcatcccggatgtgctcgagagtgccctg
gcgcagcagacgttcccgtcgtggctcacgcagttcgactccgtcacgtacactcgcaag
gctgaggacccgacgagtggcgagatggtgttccagggcagctcggcgacgatccgcagt
gtgacggcgttcctcgccctcttcaccgtccgcgcacgcgccatcaaggtgcagaaggcg
cggtccaccgacatccgcgacatgtgcacctccttcggcgtggaaagcggctacaaggca
ctcttcgatgagctggagaagcttttcaagcgctactccgtcgactaccaccacctcacc
ctcatcgccgacgcagcgacccaccgtggcgtgtgggagaactacaactttaccggcgtc
atctcccacagcgccagcccgctcttccagatgacgttcgcatcgtcaaagcgcttcctg
cacacggccctcacgcgcggcgtcggcgacgagctgaactccatcagctcggccatcatg
gtcggtgagcggcctcgcgtcggaacggcgctagtcaaggtgggccaggacccgcagatc
ttgcgcgatgtcatcgagaagaactttgcctga
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integrated database retrieval system
