Leishmania infantum: LINJ_30_2420
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Entry
LINJ_30_2420 CDS
T01112
Name
(RefSeq) pre-mRNA cleavage complex II Clp1-like protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lif
Leishmania infantum
Pathway
lif03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lif00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LINJ_30_2420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lif03019
]
LINJ_30_2420
Enzymes [BR:
lif01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
LINJ_30_2420
Messenger RNA biogenesis [BR:
lif03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
LINJ_30_2420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
Motif
Other DBs
NCBI-GeneID:
5071133
NCBI-ProteinID:
XP_001467088
UniProt:
A4I5R9
LinkDB
All DBs
Position
30:complement(899233..900510)
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AA seq
425 aa
AA seq
DB search
MQPRKTHTSLHLRQEAVTIQWNAGQEGGSVLLLSGKVELFRSSLTRNLRYAFPAEACIVL
EAFGDAVVQIDGDAITVQTPISGALDEIHALLDTARVDAMLAIDERSKKSLSSSEELKDS
WQGPRVLVVGENQWEREVVSRALLNLAVRHGSPYGICYVDVDVAMPMVGCPGTVSAAFVE
EPVTAPEDFSVMMPLTFFHGAASVTSATRKRYLDLCVCAAQAATSLGFANSKFEAGGFLI
HSLSPSTDIQHDVLSDVISIFAVTHVVVTGADWELEKFLNNAVVGRTVHFVRLPKLAGGQ
SPSAAGAEQRRRAQLEHYFFGTPRTPLMPVRGVARMSELVLLHAETFEPLSWREVPDLGL
AAVVWADTAASAVEANVAGFVALLEVGKQFVSFLAPSGGELPKPFLVVSPSLHLPRELVM
PLPVT
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgcgtaagacgcacacctcgcttcatctccgccaggaggccgttacgatacaa
tggaatgcggggcaggaaggcggctctgttctgcttctcagtggaaaagtagagctgttt
cgtagttcactgacgcgcaacttgcgctacgcctttccggcggaggcgtgcattgtgctg
gaggcctttggtgacgccgttgtgcagatcgacggagacgcaatcaccgtgcagaccccg
ataagcggtgctctcgatgagatccacgcgctgctagacactgcacgcgtggatgcaatg
ctggccattgacgagcgcagcaagaaatccctgtccagctccgaggagctcaaagactct
tggcagggccctcgtgtgcttgttgtcggcgagaaccagtgggagagggaggtggtgtcg
cgagcactgctcaacctcgcggttcgccacggtagcccgtacggcatctgctacgtggac
gtggatgtggcgatgcctatggtgggctgtccaggtacggtgtcggctgcgtttgtggaa
gaaccggtgacagctccggaggacttttctgtgatgatgccgctgacgtttttccacggc
gcggcctctgtcacgagtgcgacgcggaagcgctacttggatctgtgcgtctgtgcggcg
caagcggccacctcgctcgggttcgccaactccaagtttgaagcgggcggcttcttgatc
cactccttgtccccttccaccgacattcagcacgacgtgctgagcgacgtcatctccatt
ttcgccgtcacgcacgtcgtcgtcaccggcgcagattgggagctggaaaagtttctgaac
aacgctgtcgtgggccgcacagtgcactttgtgcggctgccgaagctggcgggtgggcag
tcgcccagcgccgccggggcggagcagcgtcggcgcgcgcagttggagcactactttttt
ggcaccccacgtactcctctgatgccggtgcgcggtgtggcacgaatgtcggagttggtg
ctcctccacgcggagacattcgagccactgagctggagagaggtgccggacctgggtctt
gccgcggtcgtctgggccgacacggctgcgtctgccgtggaggcgaacgtcgcggggttt
gtcgccttgctggaggtcggaaagcagtttgtcagcttcctcgctccatcgggtggcgag
ctgcccaagccgtttttggtggtctcgccgtccctgcacctaccacgggaactggtgatg
ccccttccggtaacgtag
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