Lotus japonicus: Lj3g3v3755420.1
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Entry
Lj3g3v3755420.1 CDS
T04348
Symbol
Lj3g3v3755420.1
Name
(Kazusa) -
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lja03016
]
Lj3g3v3755420.1 (Lj3g3v3755420.1)
Enzymes [BR:
lja01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
Lj3g3v3755420.1 (Lj3g3v3755420.1)
Transfer RNA biogenesis [BR:
lja03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
Lj3g3v3755420.1 (Lj3g3v3755420.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
LinkDB
All DBs
AA seq
601 aa
AA seq
DB search
MEDIEDMLIGTTTGHPAGFRLPVAAVGVGVGTKRNQRCSPCSSAIPGTQTIYMKTFGCSH
NQSDSEYMAGQLSAFGYSLSDNPDEADLWLINTCTVKSPSQSAMDTIIAKGKSSNKPLVV
SGCVPQGSRDLKELDGISIVGVQQIHRVVEVVEETLKGHEVRLLTRKTLPALDLPKVRKN
KFVEILPINVGCLGACTYCKTKHARGHLGSYTIDSLVGRVKSVISDGVKEIWLSSEDTGA
YGRDIGANLPNLLNALVAELPPNASTMLRIGMTNPPFILEHLKEIAEILRHPCVYSFLHV
PVQSGSDTILSAMNREYTVSEFRTVVDTLTELVPGMQIATDIICGFPGETDEDFSQTVNL
IKEYKFSQVHISQFYPRPGTPAARMKKVPSNVVKRRSRELTNVFEAFTPYSGMEGKVERI
WITDVASDGVHLVGHTKGYIQVLVIAPDYMLGTSAMVKITSVGRWSVFGEVIEMVNHVSD
DKVVNKQDPNQDMQEPESCACGNDIDSCCGQSNLDKNDQSRGPAEPQSQNSRNFIGWILR
KRKHLHKGVESELASGSVQNQEGSMKKLDFVDKALLSGISISIFMIIAIVAALTFRVIWS
Q
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggaggacattgaggatatgctgatcggaaccacaactggtcacccggcaggctttcgt
ttgccagtagcggcagttggtgttggcgttggaacgaagaggaatcagcgttgttcacct
tgttcttctgcaatccctggcactcagactatctacatgaagaccttcggctgctctcat
aaccagagtgacagtgaatatatggctggtcagctttcggctttcggctattcattgagt
gataaccccgacgaagccgatctatggctcatcaacacttgcacagtcaaatccccaagt
caatctgccatggacaccatcatagcaaaaggtaaatcttcaaataaaccactagttgtt
tctggctgtgtacctcaaggaagtcgagatttgaaagagctcgacgggatcagcatagtt
ggagtccagcaaattcatcgtgttgttgaagttgtagaggagactttaaaaggtcatgaa
gtgcgtcttttgacccgtaagacattgccagcacttgaccttccaaaggtgagaaagaac
aagtttgttgagattcttccaattaatgttggttgtttaggtgcgtgcacttattgcaag
acaaagcatgctcggggtcacctagggagttacactatagatagccttgttgggcgtgta
aaatctgtcatatctgatggagttaaagagatttggctaagcagtgaagacactggagct
tatggtcgtgacattggtgccaatcttccaaatttattgaatgcattagtagcagaacta
ccacctaatgcgagcactatgcttcgtatcggaatgaccaatcctccttttatccttgag
cacttgaaagagatagcagagattttgcggcatccatgtgtgtattcttttttgcatgta
ccagttcagtctggaagtgatactattttgagtgcaatgaatcgggaatatactgtgagt
gagttcaggactgttgtagataccttaactgagcttgtgccagggatgcagattgccacc
gatataatatgtggatttcctggtgaaactgatgaggatttttcacaaactgtcaacctc
atcaaagagtacaagttctctcaagttcatatttcacaattttatcctcgaccagggaca
cctgctgcaaggatgaaaaaggttccaagtaatgtggtgaagagaagaagccgtgaactg
accaatgtttttgaagccttcacaccatactctgggatggaaggcaaagtggaaagaatc
tggattactgatgttgcatctgatggagttcacttggttggtcatacgaagggatatata
caagttcttgtaattgctccagactatatgctgggaacttcagctatggttaaaataaca
tctgttggaaggtggtcagtttttggggaagtaattgagatggtcaaccatgtaagtgat
gataaagtcgtaaacaagcaggatcccaatcaggacatgcaagagccagaatcttgtgct
tgtggaaatgatattgacagctgctgtggtcagagtaatctcgataagaatgatcagtca
agaggccctgcagagccacagagtcaaaacagtagaaatttcatcggatggatactgagg
aagcggaagcatctgcacaaaggggtagagagtgaacttgcgtccggatctgttcaaaat
caagaagggagcatgaaaaagttggactttgttgacaaggctcttttgagcggaatatct
atcagcatctttatgattattgctatagtagctgctcttacgtttagggttatttggtcc
cagtaa
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