Lutra lutra (Eurasian river otter): 125079936
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Entry
125079936 CDS
T08100
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125079936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125079936
Enzymes [BR:
llv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
125079936
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125079936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
MMR_HSR1
AAA_18
TniB
AAA_16
AAA_22
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
125079936
NCBI-ProteinID:
XP_047549634
LinkDB
All DBs
Position
10:101815850..101819054
Genome browser
AA seq
425 aa
AA seq
DB search
MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggaggccaacgatgacaagaagccaacaactaaatttgaactagagcgtgaa
acagaacttcgctttgaggtggaggcatctcagtcagttcagttggagctgctggccggc
atggcagaaatctttggcacagagctgacccgaaacaagaaattcacctttgatgctggt
gccaaggtggctgttttcacttggcatggctgttctttacagctgagtggccgcaccgag
gtggcttacgtctccaaggacacacctatgttgctttatctcaacactcacacagctttg
gagcagatgaggaggcaggcggagaaggaagaagagcgaggcccccgggtgatggtggtg
ggccccactgatgtgggcaagtccacagtgtgtcgtctactgctcaactacgcagtgcgt
ttgggccgccgtcccacttatgtggagctggatgtgggccagggctccgtttccatccct
ggtaccatgggggccctctacattgagcggccagcagatgttgaagagggattctctatc
caagcccctctggtgtatcattttggctccaccactcctggcaccaacatcaagctttat
aataagattacatctcggttagcggacgtgttcaatcaaaggtgtgaagtgaaccgaagg
gcctctgtgagtggctgtgtcattaacacctgtggctgggtcaagggctctgggtaccag
gccttggtgcacgcagcttcagcctttgaggtcgatgtggtagtggttctggatcaagaa
cgactgtacaatgaactaaaacgggacctacctcactttgtccgcactgtgctgctccct
aaatcggggggtgtagttgaacgctccaaagacttccggcgggaatgtagggatgagcgt
atccgtgagtatttctatggattccggggctgtttctatccccatgccttcaatgtcaaa
ttttcagatgtgaaaatctacaaagttggggcacccaccattccagactcctgtttgcct
ttgggcatgtctcaggaggacaatcagcttaagctagtacctgtcacacctggccgagat
atggtgcaccacctcctgagtgttagcactgctgagggcacagaggagaacctttccgag
accagtgtggctggcttcatcgtggtgaccagtgtggacctggaacatcaggtgtttact
gttctctctccagcccctcgaccactgcccaagaacttccttctcatcatggatatccgg
ttcatggatcttaagtag
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