Lutra lutra (Eurasian river otter): 125087196
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Entry
125087196 CDS
T08100
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03020
RNA polymerase
llv03420
Nucleotide excision repair
llv05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125087196
09124 Replication and repair
03420 Nucleotide excision repair
125087196
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
125087196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125087196
03400 DNA repair and recombination proteins [BR:
llv03400
]
125087196
Enzymes [BR:
llv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125087196
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
125087196
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
125087196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
125087196
NCBI-ProteinID:
XP_047563205
LinkDB
All DBs
Position
16:complement(58987749..59010238)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSHKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcggacccccctccggagacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtctgtgacagagggcggc
atcaaataccccgagaccacagagggaggccgccccaagcttgggggactgatggacccg
aggcagggggtgatcgagcggactggccgctgccagacctgtgcgggaaacatgacggag
tgtcctggccacttcggccacatcgagctggccaagcccgtgttccacgtgggcttcctg
gtgaagacgatgaaagtgttgcgctgcgtctgcttcttctgctccaagctgctcgtggac
tccaacaacccaaagatcaaggacatcctggccaagtccaaggggcagcccaagaagcgg
ctgacgcacgtgtacgacctgtgcaagggcaagaacatctgcgagggcggcgaggagatg
gacaacaagttcggggtggagcagccggagggcgacgaggatctgaccaaagagaagggc
cacgggggctgcggacggtaccagccccggatccggcgctcgggcctggagctgtacgcg
gagtggaagcacgtcaacgaggactcccaggagaagaaaatccttctgagtccggagcga
gtgcacgagatcttcaagcgcatctcggacgaggagtgcttcgtgctgggcatggagccc
cgctacgcgcggcccgagtggatgattgtcaccgtgctgcctgtgcccccgctgtccgtg
cggcccgccgtggtgatgcagggctctgcccgcaaccaggatgacctgacgcacaaactg
gcggacattgtgaagatcaacaaccagctgcggcgcaacgagcagaacggcgcggcggca
cacgtcatcgccgaggacgtgaagctcttgcaattccacgtggccaccatggtggacaat
gagctgcccggcctgccccgcgccatgcagaagtcggggcggcccctcaagtccttgaag
cagcggctgaagggcaaggaaggccgggtccgagggaacctcatgggcaagcgagtggac
ttctcggcgcgcactgtcatcacccccgaccccaacctctccattgaccaggtgggcgtg
cctcgctccatcgctgccaacatgaccttcgcggagattgtcacgcccttcaacatcgac
agactccaggagctagtgcgcagggggaacagccagtaccctggggccaagtacatcatc
cgggacaacggcgaccgaatcgacctgcgtttccaccccaagcccagtgaccttcacttg
cagaccggctacaaggtggagcgtcacatgtgcgacggagacatcgtcatcttcaaccgc
cagccgactttgcacaaaatgtccatgatggggcatcgggtccgcatcctcccctggtct
actttccgcttaaatttgagtgtgacgactccttacaatgcggacttcgacggggacgag
atgaacttgcacctgccccagtccctggagacgcgggcggagatccaggagctggcaatg
gtgccgcgcatgatcgtcaccccccagagcaatcggcccgtcatgggcatcgtgcaggac
acgctcacggccgtgcgcaaattcaccaagagagacgtctttctggaacggggagaggtg
atgaacctgctgatgttcctgtccacgtgggacgggaaggtgccgcagccagccatcctg
aagccacggcccctgtggacgggcaaacagatcttctccctcatcatccccggccacatc
aactgtatccgcacccacagcacccatcccgacgatgaggacagcggtccttataagcac
atctctcctggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgtaagaagtctctgggcacgtcggctggctcactggtgcacatctcttacctggagatg
ggccacgacgtcactcgcctcttctactccaacattcagacagtcatcaacaactggctg
ctgatcgagggtcataccattggcattggggactccattgccgactccaagacctaccag
gacatccagaatactattaagaaggccaagcaagatgtgatagaggtcatcgagaaagct
cataacaacgagctggagcccaccccggggaacaccctgcggcagaccttcgagaaccag
gtgaaccgcattctcaacgacgcccgagacaagactggctcctctgcccagaagtccctg
tctgagtacaacaacttcaagtccatggtcgtgtctggggccaaaggttccaagatcaac
atctcccaggtcattgccgtcgtcggacagcagaacgtggaagggaaacggatcccattt
gggttcaagcacaggaccttgcctcacttcatcaaggacgactacgggcccgagagccgt
ggcttcgtggagaattcttacctggccggcctcacgcccaccgagttcttcttccatgcc
atggggggtcgcgaggggctcatcgacacggctgtcaagactgccgagactgggtacatc
cagcggaggctcatcaagtccatggagtcggtgatggtgaagtacgacgccacggtgcgc
aactccatcaaccaggtggtgcagctgcgttatggcgaggacggcctggccggcgagagc
gttgagttccagaacctggccaccctgaagccgtcgcacaaggctttcgagaagaagttc
cgctttgactacacgaacgagagggcgctgcggcgcaccctgcaggaggacctggtgaag
gacgtgctgagcaacgcgcacatccagaacgagctagagcgggagttcgagcgcatgcgt
gaggaccgggaggtgctcagggtcatcttccccaccggcgacagtaaggtggtgctgccc
tgtaacctgctgcgcatgatctggaacgctcagaaaatcttccacatcaacccccgtctg
ccgtccgacctgcaccccatcaaggttgtagagggagtcaaggagttgagcaagaagctg
gtgatcgtgaacggggacgaccccctgagccggcaggcgcaggagaacgccacgctcctc
ttcaacatccacctgcgctccacgctctgctcccgccgcatggccgaggagtttcggctc
agcggggaggccttcgactggctgctcggggagatcgagtccaagttcaaccaagccatc
gcccatcctggggagatggtgggcgccctggccgcacagtcccttggagaacctgccacc
cagatgaccttgaacacctttcactatgccggcgtgtctgccaagaacgtcaccctgggt
gtgccccgtctcaaggagctcatcaacatctccaagaagccgaagacgccttcactaact
gtcttcctgctgggccagtccgctcgagacgctgagagggccaaggacattctgtgccgt
ctggagcatacgacactgaggaaggtgaccgccaacacagccatctactacgaccccaac
ccccagagcacagtggtggcagaggatcaggaatgggtgaatgtctactacgagatgcct
gactttgacgtggcccgcatctccccctggcttttgcgggtggagctggaccggaagcac
atgaccgaccggaagctgaccatggagcagattgccgagaagatcaatgcgggtttcggc
gacgacttgaactgcatctttaatgacgacaacgccgagaagctggtgctgcgcatccgg
atcatgaacagcgacgagaataagatgcaagaggaggaggaggtggtggacaagatggac
gatgacgttttcctgcgctgcatcgagtccaacatgctgaccgacatgaccctgcagggc
atcgagcagatcagcaaggtgtacatgcacctgccgcagacagacaacaagaagaagatc
atcatcacggaggacggggagttcaaggccctgcaggaatggatcctggagacagacggc
gtgagcctgatgcgggtgctgagcgagaaggacgtggaccccgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcattgaagccgtgcggaaggctctggagcgg
gagctgtaccacgtcatctcctttgacggttcctacgtcaattaccgtcacttggctctg
ctgtgtgacaccatgacctgtcgtggccacctgatggccatcacccgacatggggtcaac
cgccaggataccgggcctctcatgaaatgctcctttgaggaaacggtggacgtgctgatg
gaggccgccgcgcacggagaaagcgaccccatgaagggagtgtcggagaacatcatgctg
ggccagcttgcaccagccggcaccggctgcttcgacctcctgcttgatgccgagaagtgc
aagtatggcatggagatccccaccaacatccccggcttgggggccgccggacccactggc
atgttcttcggctcggcgcccagccccatgggagggatttctccggccatgacgccctgg
aaccagggcgcaaccccggcctatggcgcctggtcccccagtgttgggagtggaatgacc
ccgggggcagccggcttctcccccagcgccgcctccgacgccagcggcttcagccccggc
tactcgcccgcctggtctcccacgccgggctccccgggctcgcccggcccctccagcccg
tacatcccctcgccaggtggtgctatgtctcccagctactccccgacatcacctgcctat
gagcctcgctcccctggaggttatacgcctcagagtccctcttactcccccacctcacct
tcctactcccccacctctccatcctactctccaaccagtcccaactacagtcccacatca
cccagctactccccgacctcgcccagctactccccaacctctcctagctactccccgacc
tctcctagctactccccaacctctcccagctactctccaacttccccgagctactctccc
acttctcccagctactctccgacctctccgagctactccccgacctctcccagctactcc
cccacctctcccagctactcccccacctctccaagctactcgccgacgtccccaagctac
tctcctacctccccaagctactctcccacatccccaagctactcgccaacatccccaagc
tactcgccaaccagccctaactattctccaaccagtcccaattacaccccgacatctccc
agctacagtccaacgtcaccgagctactccccgactagtcccaactacacgcccacgagc
cctaactacagcccaacctctccaagttactctccaacttcacccagctactccccaacc
tcgccgagctattccccgtcaagcccacgatacacaccacagtctccgacctatacccca
agctcccccagctacagccccagctcccccagctatagccccacctcaccgaagtacacc
cccaccagcccctcgtacagccccagctccccagagtacaccccgacctctcccaagtac
tcacctaccagcccgaaatactcgcccacctcccccaagtactcacccaccagccctacc
tactcgcccaccaccccaaagtactccccaacatctcctacttactcgccgacctctccg
gtctataccccgacctcgcccaagtactcgcccaccagccccacctactcgcccacctcc
cccaagtactcgcccaccagccccacctactcacctacctcccccaaaggctctacctac
tcacccacttccccgggctactcgcccaccagccccacctacagcctcaccagtccggcc
atcagcccggacgacagcgatgaggagaactaa
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integrated database retrieval system
