Leishmania mexicana: LMXM_29_2410
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Entry
LMXM_29_2410 CDS
T02288
Name
(RefSeq) pre-mRNA cleavage complex II Clp1-like protein
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lmi
Leishmania mexicana
Pathway
lmi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lmi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
LMXM_29_2410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmi03019
]
LMXM_29_2410
Enzymes [BR:
lmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
LMXM_29_2410
Messenger RNA biogenesis [BR:
lmi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
LMXM_29_2410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
Motif
Other DBs
NCBI-GeneID:
13451488
NCBI-ProteinID:
XP_003877385
UniProt:
E9B114
LinkDB
All DBs
Position
29:complement(884314..885591)
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AA seq
425 aa
AA seq
DB search
MQPRKTHTSLHLSHEAVTIQWNATQDGGSVLLVSGKVELFRSSLTRNLRYAFPAEACIVL
EAFGDAVVQIEGDAVIVQTPISSVLDEIHALLDTARVDAMLAIDERGKKALSSTEELKDS
WQGPRVLVVGENQWEREMVSRALLNLAVRGGSPYGICYVDVDVAMPMVGCPGTVSAAFVE
EPVTAPEDFGVMMPLSFFHGTASVTSATLKRYLDLCVCAAQAATSLGFANSKFEAGGFLI
HSLSPSTEIQYDVLSDILSIFAVTHVVITGADWELEKFLYNAVLGRTVHFVRLPKLAGVQ
SPSPAGAEQRRRAQLERYFFGTPRTPLMPMRGVARMSELVLLHAETFEPLSWREVPDLGV
AAVVWADTAASAAEANVAGFVAFLEVGKQFVSFLAPSGGELPKPFLVVSPSLHLPRELVM
PLPVT
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccgcgtaagacgcacacctcgcttcatctcagccacgaggccgttacgatacaa
tggaatgcgacacaggacggtggctctgttctgcttgtcagtggaaaagtagagctgttt
cgtagttcactgacgcgcaacttgcgctacgcctttccagcggaggcgtgcattgtcctg
gaggcctttggtgacgccgttgtgcagatcgaaggagacgcagttatcgtgcagaccccg
ataagcagtgtcctcgatgagatccacgcgctgctagacactgcgcgcgtggatgcaatg
ctggccattgacgagcgcggcaagaaagcactgtccagcaccgaggagctcaaagactct
tggcagggccctcgtgtgcttgttgtcggagagaaccagtgggagagggagatggtctcg
cgagcactgctcaacctcgcggttcgcggcggtagcccgtacggcatttgctacgtggac
gtcgatgtggcgatgcctatggtgggctgtccaggtacagtgtcggctgcgtttgtggaa
gagccggtgacagctccggaggactttggtgtgatgatgccgctgtcgttttttcacggc
acggcctctgtcacgagtgcgacgctgaagcgctacttggatctgtgcgtctgtgcggcg
caagcagctacctcgctcgggttcgccaactccaagtttgaagcgggcggcttcttgatc
cactcgttgtccccttccaccgagattcagtacgacgtgctgagcgacatcctctccatt
ttcgcggtcacgcacgtcgtcatcaccggcgcagattgggagctggaaaagtttctttac
aacgctgtcttgggccgcacagtgcactttgtgcggctgccgaagctggcgggtgtgcag
tcgcccagccccgccggggcggagcagcgccgacgcgcgcagctcgagcgctactttttt
ggcaccccacgtactcctctgatgccgatgcgcggtgtggcacgaatgtcggagttggtg
cttctccacgcggagacattcgagccactgagctggagagaggtgccggacctgggtgtt
gccgcggtcgtctgggccgacacggctgcatctgccgcggaggcgaacgtcgcggggttt
gttgccttcctggaggtcggaaagcaatttgtcagcttcctcgctccatccggtggcgag
ttgcccaagccctttttggtggtctcgccgtccctgcacctgccacgggaactggtgatg
cccctgccagtaacgtag
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