Listeria monocytogenes ATCC 19117 (serotype 4d): LMOATCC19117_1327
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Entry
LMOATCC19117_1327 CDS
T02239
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha chain, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lmoa
Listeria monocytogenes ATCC 19117 (serotype 4d)
Pathway
lmoa03030
DNA replication
lmoa03430
Mismatch repair
lmoa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lmoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LMOATCC19117_1327 (polC)
03430 Mismatch repair
LMOATCC19117_1327 (polC)
03440 Homologous recombination
LMOATCC19117_1327 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lmoa03032
]
LMOATCC19117_1327 (polC)
03400 DNA repair and recombination proteins [BR:
lmoa03400
]
LMOATCC19117_1327 (polC)
Enzymes [BR:
lmoa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LMOATCC19117_1327 (polC)
DNA replication proteins [BR:
lmoa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LMOATCC19117_1327 (polC)
DNA repair and recombination proteins [BR:
lmoa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LMOATCC19117_1327 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
HHH_3
RNase_H_2
Rv2179c-like
DEDDh_C
Peripla_BP_1
Motif
Other DBs
NCBI-ProteinID:
CBY70226
LinkDB
All DBs
Position
1338954..1343288
Genome browser
AA seq
1444 aa
AA seq
DB search
MTAKEEEKQERFQLLMTQIGLQDVTTYEEFTKDAKIEKLVADKKNKTWQFHLHVPQIFPA
ALFHMMDVGMKRAFSQIAETEMQIVPENQTIDETLIQDYWNLIVEPIGKQSPMIGKLLME
QKPTFKEPHFIEVAVHNDMEEATIQQRFQTKIIESYGKAGFPRLAMKMHLLDQSETEEYK
AFALAKQEEDQKKAAEAVQVMQKRQAEGQSGGGGAAPLTGPFQIGYKIKDDEEVKRLGDI
YDEERRITVQGLIFATEIRELRSGRSLLQFKITDYTSSMIIKMFSRDNEDAAMFQNLKKG
MWVKVRGSVQNDTFVRDLIMMAQDVNEIAGVKRLDTAEEKRAELHLHSPMSQMDATSSVD
SLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIFGIEANLIDDGVPIAYNDQH
IALEDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLT
GITDDMVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDT
LELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFH
DSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKL
REGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKAL
EEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGGANPLNRAELPDVHFRT
TDEMLKEFAFLGEEKAKEIVVTNANLVVDWMEDLKPIKDELYTPKIDGAEDEVRNMSYAM
AHQLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVGSRGSVGSSF
VATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTPYQKEGQDIPF
ETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNY
ERDMNMTIRGAEIDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEW
KTTHFDFHSIHDNVLKLDILGHDDPTAIRMLQDLSGIDPKTIPTDDPDVMKLFGSTESLG
VKSADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVWLGNAEELIK
NKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESVRKGKGLTEEMEEAMMANKVPLWY
IESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEA
VKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDSLI
PPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQRGKVSKTIIQYMDDQGCLEGLPDQNQ
LSLF
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaaagaggaagaaaaacaagaacgatttcagctgttaatgacacaaatcggt
ttacaagatgtaacaacttacgaagaatttacaaaagatgctaaaatcgaaaaactcgtt
gccgacaagaaaaataaaacatggcaatttcatttacacgttccacaaatttttccagca
gcacttttccatatgatggatgttggaatgaagcgtgcgttcagccaaattgcggaaaca
gaaatgcaaattgttccagaaaatcaaacaattgacgaaacactcattcaggattattgg
aacttaatcgtagagccaattgggaagcagtcaccgatgattggaaagcttttaatggag
caaaaacctacatttaaagaacctcattttattgaagtagcggttcataatgacatggaa
gaagcgactattcagcaacgattccagacgaaaattattgaaagttacgggaaagctgga
tttccacgccttgccatgaaaatgcacttgcttgaccagtctgaaacagaggaatataaa
gcttttgcactggccaaacaagaagaagatcagaaaaaagccgctgaagctgtgcaagtt
atgcaaaaacgacaagcagaagggcaaagcggtggcggtggagctgctccactaactggt
ccgttccaaattggttataaaattaaagacgatgaagaagttaaacgtcttggggacatt
tatgatgaggagcgacgtattaccgttcaaggcttaatcttcgcgacagaaattagagag
cttcgcagtggtcgtagtttgttacaattcaaaattactgattatacaagttcaatgatt
ataaaaatgttttctcgtgataacgaggatgcggcgatgttccagaatttgaaaaaaggt
atgtgggttaaagttagaggaagcgttcaaaacgatactttcgtgcgggacttaatcatg
atggcgcaagatgtcaatgaaatcgctggagtgaagcgtcttgatactgctgaagaaaaa
cgcgcagaactacatcttcattctccaatgagtcaaatggatgccacttcatctgttgat
tcactgttcaaacaagctgctgattggggacataaagcgattgctattactgatcactct
gttgcccaatctttcccagaagcgtatggagcagggcaaaagtatggcttaaaggttatt
tttggcatcgaagcaaatcttatagatgatggtgtgccaatcgcttataacgatcaacat
attgctttggaagatgcaacatattgcgtatttgacgttgaaacaacaggtttatccgcc
gtttatgatacgattatcgaacttgctggcgtaaaaatgaaaaatggtgaaattattgat
aaatttgaagcttttattgatcctggacacccgctttctgcaaccactattaatttaact
ggtattacagatgacatggtaaaaggttctgatccaattgatgttgttttaaaaagattt
aaagaatggagcggtgatgatattcttgtggcccataatgcttcttttgacatgggtttt
attaacactgcttatgaaaaagttggactagaaaaagcagaaaatgcggttgtcgataca
ttagaattagcacgttttctttacccacattttaaaaatcaccgcttgaatactttgaca
aagaaattcaatattattcttgaacaacatcaccgggctgtttttgatgcggaagctaca
gcgtatttggcttggaagttaattaaagatgcgaaagaaatgcacaacatcgattttcac
gattctttaaatgactatatgggagaaggcgacgcatacaagcgcgcgcgaccattccac
gccacaatttacgcacaaacggctgttggtttgaagaatctctttaaattaattacgatg
tccaatattaattacttttaccgtgtgcctcgtattcctcgctctcagctaaaaaaatta
cgcgaaggcttaattattggaactgcttgtagccaaggagaattatttgaagcaatgatg
caaaaagggatgcaagctgcagaaaaagtagcggagttctatgatttcatcgaagttcaa
ccgaagccagtttatgcaccgcttattgaacgtgaactagttcgtgacgaaaaagcttta
gaagaaatattgaaaaatatcgtccgcgtcggtgagaaaactggaaaacctgtcgttgca
acaggtaatgtacattacaaagatccagtggataaaatttatcgtaaaattttaatccat
tcgcaaggaggagcaaatccgcttaatcgggctgaattacctgatgttcatttccgtaca
acggatgaaatgttgaaagaatttgccttccttggtgaagaaaaagcaaaagaaattgtt
gtaactaatgcgaatttagtcgttgattggatggaagaccttaaaccaatcaaagacgaa
ttatatacaccaaaaattgatggtgcagaagacgaagttcgaaatatgagttatgcgatg
gcacatcaactttatggtgagaaactgccagaaatcgtggaagctagactagaaaaagag
ctgaaaagtattatcggccatggtttcgcagttatttatctcatttcacataagcttgtt
aagaaatcacttgtagatggctatctggttggttcgcggggatcggtcggttcttctttc
gttgctacaatgacggaaattaccgaagtaaacccacttccaccacattatctttgcccg
aattgtaaggattctgagttctttgatgatggttcggttggttctggttttgacttaccg
gataaagattgcccgcactgcggaaccccttatcaaaaagaaggccaagatattcctttc
gaaactttcttaggatttaaaggggataaagtacccgatattgacttgaacttctcaggg
gattatcaaccggtagcccatgcttatacaaaagaaatttttggtgaggattacgttttc
cgtgcggggacgattggtaccgttgcagagaaaaccgcttttggttatgttcgaaattat
gaacgcgatatgaatatgactattcgcggggcagaaattgatcgactcgtcgctgggtgt
acaggcgttaaacgaactaccgggcaacatccaggtggtattatcgttattccagattat
atggatgtttacgattttacaccggtgcagttcccagctgatgcgacggactcagaatgg
aaaacgacccattttgacttccattcgattcatgataacgtattaaaattagatatactt
ggacacgatgatccgactgctatccggatgttacaggatttaagcggtatcgatccaaaa
acgattccaaccgatgatccagatgtcatgaaactatttgggtctacagagtcacttggt
gttaagtctgcagatattgattcaaaaacaggaacattaggaatccctgaatttgggacg
cgttttgtaagacaaatgctagaacaaactaaaccaacaacattttctgagctagtacaa
atctctggtctttcccacgggacggacgtttggcttggaaatgcggaagaattaatcaaa
aacaaaacatgcgaactgccagatgtaattggttgtcgtgatgatattatggttttccta
atttatcaagggctagaaagttcattagcctttaagatcatggagtctgtgcgtaaaggg
aaaggcttaacggaagaaatggaagaagcaatgatggcgaataaagtgccactttggtac
attgaatcttgtaaaaaaatcaaatacatgttccctaaagcccatgctgccgcttacgtt
ttaatggcagtccggattgcttatttcaaagtacattatccactatatttttatgcaact
tatttcaccgttcgtgccgatgatttcgatttaacatcgatggtaaacggaaaagaagcc
gtgaaagcaaccatgaaagaagtaaatgataaagggatggaagcttcaacgaaagagaaa
aacttattaaccgttttagaaattgcgaatgaaatgctagctcgaggattccatttccaa
aaagttgatttgtataaatcgtctgctgatgagttcattattgacggagactcacttatt
ccgccattcaatgcgattccaagtcttggaaccaatgtagcaaaacaaatagttgccgct
cgtgaaaatggagagtttttgtcgaaagaagacttacaacagcgcggaaaagtatccaaa
acaatcattcagtacatggatgatcaaggatgcttggaaggattgcctgatcaaaatcag
ttgtcactattctaa
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integrated database retrieval system