Lagopus muta (rock ptarmigan): 125689646
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Entry
125689646 CDS
T09141
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125689646 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmut03400
]
125689646 (MSH6)
DNA repair and recombination proteins [BR:
lmut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125689646 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
125689646
NCBI-ProteinID:
XP_048793054
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Position
2:101014939..101025805
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AA seq
1343 aa
AA seq
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MSRQSTLLRFFPKAQQPRAAATPPPAGGESRCRSSRERNGLEAAAGPAERSKENGKADGA
AAKGRGVSNVYSPGDLVWAKMEGYPWWPCLIYNHPTEGTIVRGKGSSSRIHVQFFDVSPT
RGWVSIKYLRPYKGSSDREVLKGGMFYSTKPEIKKAMELADDAMSKDKPKRLELAVCSEP
SDAEEAEEEEMEQMSGSASGDSDDSNSEEDVKGNKRVPNRGSAIKAKRRRMLDSDSDRDG
SDVEFKPDVKEAASSEEASSGVDENEATDAETDAESIEESPIKVPSKRKRGNVSKPSKRS
SLENEHSEAPKRAAPVSLEAKSKLTLFAAPDNFESQANACSGGTTGFAAWEHEKLEWLQE
GKKKDAHRRRQNDPDYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVICYKVGKFYEL
YHMDAVIGVNELGLVFMKGSWAHSGFPETAFGRFSAILVQKGYKVARVEQTETPEMMEAR
CKATAHPTRFDKVVRREICRILTKGTQTYSIIDCDPSENHNKYLLCVKEKEDSSGQRVYG
VCFVDTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLFEKGNLTVDTQKILKGSLISCI
QEGLISGSQFWSASKTLKVLLEEEYFKENQNPGNGCVLPSVIKSLTSESDSLGLTPGENS
ELALSALGGIVFYLKKCLIDQELLSLANFEKYVPVDANNAKTASASSFFARTDQRMVLDG
VTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRLDAVED
LLAVPAKLTEISEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEEIKYSKKKIAD
FLSALEGFKVMNEIVDAMEEVASDFKSQVLKQLVTRKAKHPDGRFPDLSAELTRWDTAFD
HNQARKTGVITPKAGFDSDYDKALQDIKTVEEDFRAYLNEQRKLLGVKSVLYWGTGKNRY
QMEIPETAISRNLPEEYELKSTRKGYKRYWTKEIEKMLAELINAEERRDAALKDCMRRLF
YNFDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVILLPVDSAPPFLELKNARH
PCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGKSTLMRQAGLLVIMAQLG
CYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSILQHATEHSLVLVDELGR
GTATFDGTAIASAVVGELAENIKCRTLFSTHYHSLVEDYSGSAAVRLGHMACMVENESED
PSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQRGHRKAREFEEKTMSLRIFRFLC
RVVDGATRDVSAVGKLSAMLSHL
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccagagcaccttgcttcgattcttccccaaggcccagcagccgcgggccgcc
gccacccctccgcccgccggcggggagagccgatgccgttcttccagggagcggaacggt
ctcgaggccgccgccgggcccgcggagcgtagcaaggagaatggcaaagcggatggggcg
gccgccaaaggccgcggtgtctccaatgtttattctcccggggacttggtctgggccaag
atggaaggctatccctggtggccgtgcctcatctacaaccaccccacggagggaaccatc
gtcagagggaaagggagctcttctcggatccacgtgcagttctttgatgtcagtcccacg
aggggctgggtcagcatcaagtacctgaggccgtacaaaggctcatcagacagagaggtg
ctgaagggaggtatgttttatagtacgaagcctgaaattaaaaaagcaatggagctggca
gatgatgccatgagtaaagataagcctaagcgacttgagctggcagtgtgcagcgaacct
tcagatgctgaggaggcagaggaggaggaaatggagcagatgagtggaagtgcatcaggc
gacagtgatgacagcaatagtgaggaggatgtgaagggcaataagcgagtaccaaacaga
ggtagtgccataaaagccaaaagaagaagaatgctggattcggacagcgatcgtgatggt
tctgatgtagagttcaagcctgatgtgaaagaagcagcaagcagcgaggaagctagtagt
ggggtggatgaaaatgaagctactgatgcagagacagatgcagagagcattgaagaaagt
cctataaaagtcccttctaaacggaagagaggaaatgttagcaagccttctaaaaggagt
agcttagaaaatgaacattctgaagcacccaaaagagcagcaccagtttcgttagaagcc
aaatctaagctgacgttgtttgcagcacctgacaattttgagtctcaggcaaatgcctgc
agtggaggcactactggctttgcagcatgggaacatgagaagcttgagtggctgcaggag
gggaaaaagaaagatgcacacaggagacgacagaatgaccctgactatgacccatgcact
ttgtacgtaccggaggactaccttaacaaatgtacgcctggaatgcggaggtggtggcag
ctgaaaagtcaaaacttcgatgcggtgatttgctacaaagtgggaaaattctatgagttg
tatcacatggatgcagtcatcggtgtgaatgagctgggcctggtatttatgaaaggttca
tgggctcattccggttttccagaaactgcatttggcaggttctctgctattctggttcag
aagggctacaaggtagcccgtgttgagcaaacagaaactcctgaaatgatggaagcgcgc
tgcaaggcaacggcccaccccaccaggtttgacaaggttgtgcggcgggaaatctgcaga
atccttaccaagggcactcagacctacagcattatagattgcgatccgtcggagaaccac
aacaaataccttctgtgtgttaaggaaaaagaagactcctctggacaacgtgtttatggg
gtctgttttgttgacacatcagttgggaagttttatgttggccagttctcagatgaccgg
cactgctcgaggtttaggactttagtggcacattacactcctgtgcaggtcttgtttgag
aaggggaacctgactgtggacactcagaagatactgaaaggctcgctcatttcttgcatt
caggaggggctgatctctggctcccagttctggagtgcgtctaaaacactaaaagttctt
cttgaagaagagtatttcaaggagaatcaaaaccctgggaatgggtgtgttctgccctcc
gtcatcaaatctctgacttcagagagtgactcgctgggcttaactcctggcgagaacagc
gagttagctttgtcagctcttgggggaattgtcttctatctcaaaaagtgtctgattgat
caggagctgctgtcgctggcaaactttgagaagtatgtccctgtggatgccaataatgca
aaaactgcaagtgccagtagtttctttgccagaactgaccagcgcatggtgctggatgga
gtcactctgatgaatctggaagtcctgcagaatggaaccaacggaaccacggaaggtact
ttgttggagaggattgattcctgttgtacaccgtttgggaagcggctcctgaagcagtgg
ctttgtgctcctctttgtaatcctacgtccattaatgatcgtttagatgctgtggaggac
cttctggcggtgccagctaaactgactgaaattagtgagcatctgaagaaacttcctgac
cttgaaaggctgctcagcaaaattcacagcattggatcgccgcttaagagtcagaaccat
cctgacagcagggccatcttttatgaagaaattaaatacagcaaaaaaaaaatcgccgac
tttttgtctgcgctggaggggtttaaagtaatgaatgaaattgtcgatgccatggaagag
gttgccagcgacttcaaatctcaagtccttaagcagttagtcacccgcaaagccaaacat
ccggacggacgcttcccagacttgagcgcagagcttacaaggtgggatactgctttcgat
cataaccaggctcgcaagacaggagtgattactccaaaggcaggttttgactccgattac
gataaagcactacaggatattaaaactgttgaggaagatttccgtgcgtacctcaacgag
caacgcaaactgctgggagtcaaatccgtgctgtactgggggacgggcaaaaatcggtat
caaatggaaatcccagaaaccgccatatcgcgtaatttacctgaagaatacgagctgaag
tcaaccaggaagggatacaagcgttactggaccaaggagattgagaagatgctggctgag
ttgattaacgctgaggagcgaagagacgcggctctgaaagactgcatgaggcgtttgttt
tacaactttgacaagaacagccaagactggcagacagctgtacagtgcatcgctgtgctg
gatgtcttgatgtcccttgctaactacagtcaagatggtgatggaccactgtgccgacct
gtaattctactgcctgtggatagtgctcctcccttcctggaactgaaaaatgcacgccat
ccttgcattacaaaaactttctttggggacgattttattcctaatgacatcgtgataggc
agtaaagatgaagatggtggtagtgaagcttcctgtgtgctagtcactggcccaaacatg
ggtggcaaatcaacactcatgagacaggctggtctcctggttataatggctcagctggga
tgctacgtgcctgctgaggtctgcaggctcacacccatcgacagagtatttacacggctc
ggggcctccgacagaatcatgtcaggtgaaagtaccttctttgttgaattaagcgagact
tccagcatcctgcagcatgcaacagagcactccctcgttcttgtggacgaactcggccgg
ggcacagctacgtttgacggaacagcgatagcaagtgcagttgttggagaacttgctgag
aacatcaagtgccgcacgctgttctccacgcattaccactccttggtggaggattactcg
ggcagcgcggccgtgcggctcggacacatggcttgtatggtggagaatgagagcgaagat
ccaagccaggaaacaattacatttctgtataaattcattgaaggagcgtgtccaaaaagc
tatggcttcaatgcagccagacttgctgacatcccagaggaagttattcagagagggcac
agaaaagcaagagagtttgaagaaaagacaatgtcactgcgaatattcaggtttctgtgc
cgggtggtggatggtgccacacgtgatgtgagcgcggtagggaagcttagcgctatgctc
agtcacctctga
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