Lepisosteus oculatus (spotted gar): 102682961
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Entry
102682961 CDS
T07349
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1 isoform X2
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03020
RNA polymerase
loc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102682961 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
102682961 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102682961 (polr2a)
03400 DNA repair and recombination proteins [BR:
loc03400
]
102682961 (polr2a)
Enzymes [BR:
loc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102682961 (polr2a)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
102682961 (polr2a)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
102682961 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
102682961
NCBI-ProteinID:
XP_006627498
Ensembl:
ENSLOCG00000013863
LinkDB
All DBs
Position
LG2:complement(60627312..60646619)
Genome browser
AA seq
1905 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFINKIMKVLRCVCFFCSKLLVDSN
NPKIKDILGKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQNETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQVFSLIIPGHINA
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DVTRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVE
FQNMATLKPSNKAFEKKFKFDYTNERALRRTLQEDVVKEVLTNAHVQGELEREFEKMRED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVIEGVQELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSTEAYEWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA
AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNIPGISMAGPTGMF
FGSAPSPMAGMSPAMTPWNQVATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
XXXSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYS
STSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSP
KYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPGYTPTSPKYSPTSPTYSPTSPKYSP
TSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq
5718 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccggcgacagcgcatgcccactgcgcctcatcaagagagttcag
ttcggcatcatcagccccgatgaacttaaacggatgtcagtcacagaagggggtatcaag
taccccgaaaccacagaagggggtcgccccaagctgggggggctgatggacccccggcaa
ggcgtgatcgagcggtcggggaggtgtcagacgtgcgcagggaacatgacggagtgcccg
ggccacttcggtcacatcgagttggccaagcccgtcttccacgttggtttcatcaacaag
atcatgaaggtgctccgctgcgtctgtttcttctgctccaagctcctggtggactcgaac
aaccccaagatcaaggacatcctgggcaagtcgaaggggcagccccgcaaacggctgacc
cacgtgtacgacctctgcaagggcaagaacatctgtgagggcggcgaggagatggacaac
aagttcggtgtggagcagaacgagaccgaggaggacatcaccaaggagaagggccacggc
ggctgtggccgataccagccgcggatccgccgctcgggcctggagctgtacgccgagtgg
aagcacgtgaacgaggactcgcaggagaagaagatcctcctgagccccgagcgcgtccac
gagatcttcaagcgcatctccgacgaggaggacatcatcctgggcatggaccccaagttc
gcgcggcccgagtggatgatcgtgaccgtgctgcccgtgcccccgctggctgtgaggccg
gccgtcgtcatgcagggctctgctcgaaaccaggacgacctgactcacaagctggccgac
atcgtgaagattaacaaccagctgcgccgcaacgagcagagcggggcggcggcccacgtc
atcgccgaggacgtcaagctgctgcagttccacgtggccaccatggtggacaacgagctg
cccggcctgccccgggccatgcagaaatccggccggccgctcaagtccatcaagcagcgg
ctgaaaggcaaggagggccgggtcagggggaacctgatggggaagagagtggacttctcg
gcccggacggtcatcacgcccgaccccaacctgcagatcgaccaggtgggcgtcccgcgc
tccatcgctgccaacatgaccttcgccgagatcgtgacgcccttcaacatcgacaggctc
caggagctggtgcgcagaggaaacagccagtacccaggagccaaatacattatccgggac
aacggagacaggatagatcttcgattccaccccaagcccagtgacctgcatcttcagata
ggatacaaggtggaaagacacatgtgcgatggggatatcgtgatcttcaacagacagccc
acgctgcacaaaatgtccatgatggggcacagggtacgaatcctgccctggtccaccttc
aggctcaacctcagtgtgaccaccccgtacaacgcggactttgatggcgacgagatgaac
ctgcacctgccgcagtctctggagaccagggccgagatccaggagctggccatggtgccg
cgcatgatcgtgaccccgcagtccaacaggccggtcatgggcatcgtgcaggacactctc
accgccgtccgcaagtttaccaagagagacgtcttcctggaccggggggaagtgatgaac
cttctgatgttcctctccacgtgggatggcaaggtaccccagccggccatcctgaagcca
cgccctctctggacgggcaagcaggtgttcagccttatcatccccgggcacatcaacgcc
atccgcacgcacagcacgcaccctgatgaggaggacagcgggccatacaagcacatctcg
ccaggggacaccaaggtcattgtggagaatggggagctgatcatgggcatcctgtgcaag
aagtctctgggtacctctgctggttccctggtgcacatctcctacctagagatgggccat
gatgttacccgcctcttctacagcaacatccagactgtggtcaacaactggctgctcatt
gagggtcactccatcggtattggagattccattgctgatgccaagacctacctggacatc
cagaacaccatcaagaaggccaagcaggatgtgatagaggttatcgagaaggcccacaac
aatgagctggagcccacgccaggcaacacgctgaggcagacctttgagaaccaggtcaac
cgcatcctgaacgacgcccgagacaagacgggctcctccgcccagaagtccctctccgag
tacaacaacttcaagtctatggtggtggccggctccaagggctccaagatcaatatctca
caggttattgccgtggtggggcagcagaacgtggaaggcaagcgcattccgtttgggttc
aagcaccgcacgttgccccacttcatcaaggatgactacggccctgagagcaggggcttt
gtggagaactcctacctggctggcctgactcccacggagttcttcttccatgccatggga
ggacgtgaggggctgatcgatactgccgtcaagactgccgagacagggtacatccagcga
cgactgatcaagtctatggagtctgtgatggtgaagtacgacgccactgtccgtaactcc
atcaaccaggtggtgcagctgcgctacggtgaggacgggctggcaggggaggccgtggag
ttccagaacatggccacactgaagccctccaacaaggccttcgagaagaagttcaagttt
gactacaccaacgagcgtgctctgaggcgcaccctgcaggaggacgtggtgaaggaggtg
ctgacgaacgctcatgtgcaaggcgagctggagcgggagtttgagaagatgagagaggac
agggagatcttgcgggccatctttcccactggggacagcaaggtggtgctaccctgtaat
ctggccaggatgatctggaacgcccagaagatctttcgcatcaacacgcgcacccccact
gacctaaaccctctgcgtgtcattgaaggggtccaggaactgagcaagaagctgatcatt
gtgaacggggatgaccccctgagcaggcaggcccaggagaacgccaccctgctcttcaac
atccacctgcgctccacgctctgctcccgccgcatgaccgaggagttccggctcagcacc
gaggcctacgagtggctactgggggagatcgagaccaagttcaaccagtccatcgcccac
ccaggggagatggtcggagctctggctgcccagtccctgggtgagccggccacccagatg
accctgaacaccttccactacgccggcgtgtcggccaagaacgtcaccctgggcgtcccg
cgtctcaaggagctgatcaacatctccaagcgcccgaagacgccctcgctcacagtcttc
ctgctgggccaggcagctagggacgccgagagggccaaggacatcttgtgccgattggag
cacaccaccctgaggaaggtgacggccaacaccgccatctactacgatcccaacccccag
aacacggtggtggcggaggaccaggagtgggtcaacgtctactacgagatgccggacttc
gacgtcacgcgcatctccccgtggctgctgcgcatcgagctggaccgcaagcacatgacg
gaccgcaagctgaccatggagcagatcgccgagaagattaacgcaggttttggcgacgac
ctgaactgcatcttcaatgacgacaacgcagagaaacttgtgctgcgaatccggatcatg
aacagcgatgagaacaagttccaagaggacgaggaggtggtcgacaagatggacgacgac
gtcttcttgcgctgcatcgagtccaacatgctgactgacatgacgctgcagggcattgag
cagatcagcaaggtgtacatgcacctgccccagacggacaacaagaagaagatcatcatc
acggaggacggggagttcaaggccctacaggagtggatcctggagacggatggcgtgggg
ctaatgcgtgtgctgagtgagaaggacgtggacccagtgcgcaccacatccaacgacatt
gtggagattttcacggtactgggcatcgaggcggtgaggaaggccctggagagagagttg
taccacgtcatctcctttgatggctcctacgtcaactaccgccacttggcgctgctgtgc
gacacgatgacttgccgtggtcacctgatggccatcacccggcacggcgtgaaccggcag
gacacgggaccactcatgaagtgctccttcgaggagacggtggatgttctgatggaggcg
gctgcccatggcgagagtgaccccatgaaaggcgtgtcggagaacatcatgctgggccag
ctagccccggctggcactgggtgctttgacctgctgttagatgctgagaagtgcaagttt
ggcatggagatccccaccaacatccctggcatcagcatggctggccccactggaatgttc
tttggctctgcgcccagcccgatggctggcatgtcccctgcaatgaccccatggaaccag
gtagccactccagcctacggagcctggtcccccagtgtgggaagtggaatgaccccaggt
gcagctggattctcccccagtgctgcctccgatgccagcggcttcagccctggctactcc
ccagcgtggtcccctacacctggctctcctggctcgccaggtcctgccagcccctacatc
ccctctccaggtggcgccatgtctcccagctactcccccacttcccctgcttacgaacct
cgatcacctgggggctacaccccccaaagtccaggctactcgccaacatccccctcctat
nnnnnnnnntctcccagctacagccccacctcgccttcctattcgcccacctcccccagc
tacagccccacctccccctcctactcccccacctctcccagctacagccccacctccccc
tcgtactcacccacttctcccagctacagccccacgtctcccagctacagccctacgtcg
cccagttacagccccacctcccccaactacacccctacctccccctcctactctcccacc
tcgccttcttactctcccacgtcacccaactacaccccaacctcgcccaactacagcccc
acatccccctcctactctcctacatcgcccagttactccccgacctccccctcctactcg
tccactagcccccgctacaccccgcagtctcccacctacacccccagctcgccctcctac
agccccagctcgccgtcctattccccaacctcccccaagtacacccccacgtctccctcc
tacagccccagctctccagagtataccccgacctcccccaagtactcgcccacatcgccc
aagtactccccgacctcccccaagtactcgcccacctcgcccacctactcgcccaccacc
cccaagtacagccccaccagccccacgtactcgcccacctctccaggttacacccccacc
tcccccaaatactcgcccacctcgcctacctactcgcccacctcgcccaagtactcgccc
acctcccccacctactcgcccaccagcccaaagggctccacctacagccccacctcgcct
ggctacagccccacctctcctacctacagcctcaccagcccagccatcagcccggacgac
agcgacgaggacaactga
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integrated database retrieval system
