Lepisosteus oculatus (spotted gar): 102693746
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Entry
102693746 CDS
T07349
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc04010
MAPK signaling pathway
loc04210
Apoptosis
loc04218
Cellular senescence
loc04620
Toll-like receptor signaling pathway
loc04621
NOD-like receptor signaling pathway
loc04622
RIG-I-like receptor signaling pathway
loc04623
Cytosolic DNA-sensing pathway
loc04625
C-type lectin receptor signaling pathway
loc04920
Adipocytokine signaling pathway
loc05132
Salmonella infection
loc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
102693746 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
102693746 (nfkb1)
04218 Cellular senescence
102693746 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
102693746 (nfkb1)
04621 NOD-like receptor signaling pathway
102693746 (nfkb1)
04622 RIG-I-like receptor signaling pathway
102693746 (nfkb1)
04623 Cytosolic DNA-sensing pathway
102693746 (nfkb1)
04625 C-type lectin receptor signaling pathway
102693746 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
102693746 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
102693746 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
102693746 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
loc03000
]
102693746 (nfkb1)
Transcription factors [BR:
loc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
102693746 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank
Ank_2
Ank_4
Ank_3
Ank_5
Death
Motif
Other DBs
NCBI-GeneID:
102693746
NCBI-ProteinID:
XP_015200704
Ensembl:
ENSLOCG00000012080
UniProt:
W5N2L1
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All DBs
Position
LG4:complement(51290549..51341974)
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AA seq
987 aa
AA seq
DB search
MAEEDPYLQGGIFDMETFTPLMGMETFNFTAMPPTNSLRVADGPYLQIIEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKSYPQVKICNYQGPARVVVQLVTFSKNVNLHAHSLVGKQC
DKGICVADQQPKDTSISFPNLGILHVTKKNVNKTLEERMTEAYRMGYNYGISIHPEIDCL
QSEGRIPRELTEHQKSLITNAATSQAKEMDLSVVRLMFTAFLPDSDGGFTRRLEPVISDP
IYDSKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEDDETGLAWEAYG
DFSPTDVHRQFAIVFKTPKYRDLNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQVIDKEE
VQRKRQKTLPNFQDFGPPGAGGGMYRGGGPGTGGGPSTGGGQCNFQGYQGYNNFGGGYPF
SHGPGGPGAGMKHASKGPTDDAEDDSDSDTDEDPATAGIVQICGQQASEEIKLPPKVEQS
SSTEDSSPTEDPASAEEEEITADLLFGEKAMQLAQRHAEALFNYAVTGDVKMLLAVLRPL
LAVQDENGDTGLHLGVIHSRTDAVKSLAEVISALPGDDVLSMRNDLYQTPLHLAVITKQA
EAVEALLKAGANMSLTDRHGNTALHLAAKEGEGKILNLLLEHKDAAELIDLPNAAGFHAI
HLAVLANSILCLRQLIEFGANVDACEQSSGRTALHLAVELENVSLAGCLLLEGNAHVDAC
TYNGSTALHIAAGKGSMKLTALLMAAGADPHKENSEPLYDVDDECHLEEEEEDEGFVPGT
TPLDMAMSSEIYDLLNGKQYQPDSKTVVSLPQGDMKHLDEQTKLELCKVLEQPANNWEAL
AQNLGLGILSSAFRLSPSPAKTLLDSYKVSGGTMKELLEGLKAMGNDKAVDIVQKAMSSE
REDTSGPVSTQVTHQQTGALLSQHLQGLENYSQDESSVCDSGVETSFRKLSLLSSESLSS
SQEQAEQAGDHKLPTASPHSYVVKGEV
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagaagacccttatctccaaggaggtatttttgacatggagacatttactccc
ttaatgggaatggagacttttaatttcaccgctatgccacctactaactcactaagagta
gcagatgggccgtaccttcaaataatagaacaaccaaaacagagggggtttcgttttcgc
tatgggtgtgaagggccatcccatggagggctacccggtgcttcgagtgagaagaacagg
aaatcctatccgcaagtcaagatctgcaactaccagggaccagcgagagtggttgttcag
cttgtgactttttcaaagaacgtcaatcttcatgctcatagcctggtggggaagcagtgc
gacaaaggaatatgtgtcgctgaccagcagcccaaagacacaagcatcagttttccaaac
ctcggcattctccatgtcactaaaaaaaatgttaacaaaaccttggaggagaggatgact
gaggcttacaggatgggctacaactatgggatcagcatccatccagaaattgactgcctg
cagtctgagggcaggataccgagagagctcacagagcaccaaaaaagtctcattactaat
gcagccaccagccaggccaaggaaatggacctgagtgtcgtgcggctcatgttcactgcc
tttctgccagatagtgatggggggttcacacgtagacttgaacccgtcatttcagatccc
atttatgacagcaaagcccctaatgcctccaatttgaagatagtgaggatggaccgtaca
gcaggctgtgttactgggggagaagaggtctatctcctgtgtgacaaggttcagaaagat
gacatacaggttcgcttctatgaggacgatgagacgggtttggcctgggaggcttatgga
gatttctctcccacagatgtgcacaggcagtttgctatagtctttaagacaccaaagtac
cgggacctcaacttgcagaaacctacttctgtatttgtgcagctcaagagaaagtctgac
aatgagacaagtgaacctaaacccttcacataccatccacaggttatagacaaggaagag
gtacagcgtaagaggcagaagaccctaccaaacttccaggactttggtccccctggggca
ggtggtgggatgtacagaggagggggtcccggaaccggtgggggcccaagcactggagga
ggccaatgcaatttccagggataccaaggctataacaattttggaggtggttatccattc
tcccatggtccaggaggtcctggtgcaggaatgaagcatgcttctaaaggcccgactgat
gatgcagaagatgacagcgacagtgatacagacgaagacccagcgactgcaggaattgta
cagatttgtggtcaacaagcatcggaggagatcaagctacccccgaaggtagagcaatcc
agctctacagaagactcaagccctactgaagacccagcatcagcagaagaagaggaaatt
accgcagacctgctcttcggagaaaaggccatgcagctggcccagcgtcacgccgaggcg
ctttttaactacgccgtcacgggggacgtgaagatgctgctggccgtcttgcgccccctt
ctggctgtccaggatgagaacggggacacgggcttgcacctcggggtaatccacagcagg
accgatgctgtgaagagtttggctgaagtcatttctgccctcccaggagatgatgttctg
agcatgagaaacgatctctaccagacacccttgcacttggcggttatcaccaagcaggca
gaggcagtggaagctctgctcaaagccggtgcgaatatgagcctcacagatcgtcacggt
aacactgctcttcacctcgctgccaaagaaggagaagggaagattttgaacctgctgctg
gaacataaggatgcagctgaactcattgacctccccaatgctgcaggatttcatgctatc
cacttggcagtcctggccaacagcatattgtgcctccggcagctgattgaatttggagca
aatgttgacgcctgtgagcagagctctgggaggactgccctgcaccttgctgtggaactg
gagaatgtctccttagctggctgcctgcttctcgagggaaatgcacatgtggacgcctgc
acatacaatgggtctacagcactccatatcgccgcaggaaaaggctctatgaaactgact
gctcttctaatggcagctggggctgacccccacaaggagaactctgagcccctttatgac
gtagatgatgaatgtcacctagaggaagaggaggaagacgaagggtttgtgccagggaca
acccccttagacatggccatgtcttctgagatctatgatcttctgaatggtaaacagtat
cagccagattcaaaaactgtcgtttcactccctcaaggggacatgaaacatctcgatgaa
caaaccaaactagaactttgcaaagtcctggagcagcctgcaaataactgggaggccctg
gctcaaaacctaggattaggaatcctgtccagtgccttcaggctgagcccttccccagcc
aaaacactactggacagctacaaggtgtctggtggcaccatgaaggagctcctggaaggc
ctgaaggccatgggcaacgataaagcagtagacattgttcagaaagccatgtctagtgag
agggaagacacatctggaccagtctctactcaggtcactcaccaacagacgggtgccctc
ctctcccagcatctgcagggcctggagaactacagccaagacgaaagcagtgtgtgtgac
agtggagtggaaacatcttttagaaagctgagcctgttgtcctctgagtctttgagcagc
tcccaagagcaggcagaacaagcaggagaccacaagctccccactgcctcgcctcacagt
tatgttgtcaagggagaggtataa
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