Lepisosteus oculatus (spotted gar): 102696268
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Entry
102696268 CDS
T07349
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
loc03016
]
102696268 (cdkal1)
Enzymes [BR:
loc01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
102696268 (cdkal1)
Transfer RNA biogenesis [BR:
loc03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
102696268 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TraT
Glyco_hydro_120_ins
TRAM
Motif
Other DBs
NCBI-GeneID:
102696268
NCBI-ProteinID:
XP_015213213
Ensembl:
ENSLOCG00000008933
UniProt:
W5MR70
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All DBs
Position
LG11:complement(29308527..29728385)
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AA seq
613 aa
AA seq
DB search
MPAACDSLVDDIEDMVSAHDPKPHDRQFARKNIVPRSRKRNQQQNTEDLLVDSVIPGTQK
VWMKTWGCSHNSSDGEYMAGQLAASGYKMTENPSEADLWLLNSCTVKNPAEDHFRNSIKK
AKEQNKKVVVAGCVPQAQPRMEYLKGLSVIGVQQIDRVVEVVDETIKGHSIRLLGQKKDN
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERAQQS
FLEGVCEIWLTSEDTGAYGRDIGTDLPTLLWQLVEVIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICG
FPGETDEDFKETMELVNEYKFPSLFINQFYVRPGTPAAKMQQVQPQVKKQRTKELSQLFH
SYNPYDHKIGQKQHVLVTEESFDGQYYVAHNKFYEQVLVPKIPEFKGKMIEVEIYETGKH
FMKGQPFGNAKVFTPSIAKPLEKGEVSGLTTCTTAIPVTLIESAFTYCVKPKNSLCWCLW
FSTDSLKRKKDVSHTLTNEFTTLRQNSSNSKPDLHSPELLCQTWTLSGFGLKLVSVGLAV
FAVIVAYAMEKLY
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgcttgtgattcactggtggatgacattgaagatatggtatcggcacacgat
cccaagcctcacgatcgacagtttgcgaggaagaacattgtgccaagatccagaaagaga
aatcagcagcaaaataccgaagatctacttgttgacagtgttattcctgggacacaaaag
gtctggatgaagacatggggctgctcccacaacagctcagatggagaatacatggctggc
caacttgctgcaagtggatacaaaatgacagagaatccatctgaggctgacttgtggctt
ctgaacagctgcaccgtgaaaaacccagcagaagaccatttcagaaactcaatcaagaaa
gctaaagaacaaaataaaaaggtggtggttgcaggatgcgttcctcaggctcagcccaga
atggaatacctcaaaggcctgagtgttattggggtgcagcagatcgatcgtgtggtggag
gttgtggacgagactattaaaggtcactccatacgcctgttgggtcagaaaaaggataat
ggaaaacggttggggggcgctcgattggatttgccgaagattaggaaaaacccactgata
gaaatcatttccatcaatacaggttgtcttaatgcctgcacctactgcaaaactaaacat
gcacgaggggacttggcaagctatccaatagaggagctggtagagagagcgcaacagtcc
tttttggagggtgtctgcgagatctggttgaccagtgaagacacaggagcctatggaaga
gacattggcacagatttgccgactctgctgtggcagctggtggaagtgatacctgaggga
gccatgttgagactgggcatgacaaaccctccttacatattggagcacctggaagaaatg
gcaaagatcctcaatcatcccagggtgtacgccttccttcacgtacctgtccagtctgct
tctgacagcgttctgatggacatgaaaagagaatactgtgtggcagacttcaaacgggta
gtcgacttcttgaaagaaaaggtcccaggaataactattgctactgatattatctgcggt
ttcccgggtgagacagatgaagactttaaagagaccatggagctagtaaacgaatataaa
ttccccagcctcttcatcaatcagttctacgttagacctggaaccccagcagctaagatg
cagcaggtccaaccccaagtgaaaaagcaaaggacaaaagaactctctcaactgttccat
tcatataacccttatgatcataagattgggcagaaacaacacgttttggtcacggaagag
tcctttgatggccagtattatgttgctcacaataaattttacgagcaggttttggtgcca
aaaattcctgagttcaaaggcaagatgatagaagtggagatttatgaaacaggaaagcat
ttcatgaagggacagccatttggcaatgccaaggtctttaccccttcaattgccaagcct
ctagagaagggagaggtctctggattgaccacttgcaccacagctattccagtcaccttg
atagaaagtgcctttacctattgtgtcaaaccaaagaactcattatgctggtgtctgtgg
ttcagcacagattctctgaaaaggaaaaaggatgtttcacatacacttacaaatgagttc
acaactctccgtcaaaatagcagcaatagtaagccagacctgcattctccagagcttctc
tgtcagacatggacactgagtggatttggcctaaagctggtgtctgtgggactggctgtg
tttgcagtgattgtagcctatgcaatggaaaaattatattaa
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