Lepisosteus oculatus (spotted gar): 102698104
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Entry
102698104 CDS
T07349
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102698104 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102698104 (polr1b)
Enzymes [BR:
loc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102698104 (polr1b)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
102698104 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
102698104
NCBI-ProteinID:
XP_006638719
Ensembl:
ENSLOCG00000016558
UniProt:
W5NIJ4
LinkDB
All DBs
Position
LG16:15292690..15302835
Genome browser
AA seq
1135 aa
AA seq
DB search
MESTLGRGGPCSGPSLKNLTEPGFGVPKNEQHPAVQELCRAHIDSFDQAVTDGLCRVVQA
IPPLEFMFKNDRITLAFEEVTISNPVVTKGTICRDLRVFPAECRGRRTTYRGKLVAGVSW
SVNGIPKGIIKQSLGWVPIMVKSKLCNLHGLSPKELIAHHEEAEEMGGYFIINGIEKVIR
LLIMPRRNFPIAMVRPKWKSRGQGYTQYGVSIRCVKEEHTAINMNLHYLDNGTVMVNFIY
QKELFFIPLGFALKALVEFTDYQIYQELIKGREENSFYKNCVSEMLRMVMEEGCTTRKQV
LNYLGERFRVKMLLPEWYSNEQCAEFLLGQCLCIHLKSNVEKFYLLCLMTRKLFSFAKGG
CMEENPDSLMCQEVLTPGQLYLMFLKEKMTAWLYSVKITMDKKAQRGNCTLNSDSLAKIF
NSGFDLTRPFEYLLATGNLNSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFSK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAQCKIVSQALSTTSFPALLCSIGVT
PVDGTPSQPYSECYPVVLDGAMVGWVEKDLAPAVADTLRNFKVLKEKRVPPWTEIVLVPM
TGKASIYPGLLIFTTPCRMVRPVRNLALGKEELIGTFEQLYTDIGIFEGELVPGVTTHQE
LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQERSDNKLYRIQTPQSP
LVRPSMYDYYNMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGCIYKTELID
LDEKVKGGENSLVFGVKPGDPKVMQKLDDDGLPPVGAVLQYGDPFYSYININTGQSFVNF
YKSKESCVVDNIKVCSNDTGTGKFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPTE
DMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAAMHGLCHDATPFTFSEEHSALQ
HFGEMLKAAGYNYYGTERMYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDK
VTNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCLDCGNLLSPL
LEKPPPSWSATRQRKTVCALCKKSDSIDVVSIPYVFRYFIAELAAMNIKVKLDIK
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggagtccacgttaggacggggtggtccgtgctccggtccgagtctgaagaacttgact
gaaccgggtttcggagttcctaaaaatgagcagcatccagctgtgcaagagctttgccga
gcgcacattgattcgtttgatcaagcggtcaccgacgggctttgtcgtgttgtgcaggcc
atcccgccactggagttcatgtttaagaatgatcgtattaccctggcatttgaggaggtc
acaatcagcaacccggtggtcactaagggaacgatctgtcgtgacctgagagttttccct
gcagaatgtaggggtaggcgcaccacctacagagggaaattagtagcaggtgtcagctgg
tcagtgaatggcattcccaaagggattatcaagcagtctctcggttgggtgccaatcatg
gtgaagtccaagctctgcaatttgcacggtctgtctccaaaagagctcattgcacatcat
gaggaagcagaggaaatgggagggtattttatcatcaatggaattgagaaggtaattcga
ctgctgatcatgcccaggaggaacttccctattgcaatggtgaggcctaaatggaagagc
aggggccaaggttacacacagtacggtgtttcaatacgctgtgtaaaggaggaacacaca
gctattaacatgaatctacactatctggacaatggaacggtgatggtgaacttcatctac
cagaaggagctcttcttcattcctctgggatttgccttaaaggcgctggtggagtttaca
gattaccagatctatcaagagctgatcaaagggagggaggagaactctttctacaagaac
tgtgtgtcagagatgctgcgcatggtgatggaggagggctgcaccaccaggaagcaggtg
ctgaactacctgggggagaggttccgggtcaagatgctcctgccggagtggtactccaat
gaacagtgcgcagagttccttctggggcagtgcctctgcattcacctgaagtccaacgtg
gagaagttctacctgctgtgtctgatgacgcgaaagctcttcagctttgccaagggaggg
tgcatggaagaaaacccagacagcttgatgtgtcaagaagtgcttacccccggccagctt
tacttaatgtttttaaaagagaaaatgacagcttggttatattcagtgaaaattacaatg
gacaaaaaagcacagagaggcaactgcacgttgaattcggacagtcttgcgaaaatattc
aattcagggtttgacctgaccagaccctttgagtatctcttggccacaggaaaccttaat
tcaaaaacagggctggggatgctgcagaactctggcctgtgtgttgtggccgacaagctg
aacttcatccgctacctgtctcacttccgctgcgtgcaccgaggagcggctttctccaag
atgaggaccacgtccgtccgtcggcttctgcccgagtcctgggggttcctgtgccctgtc
cacacccctgatggagagccgtgtgggctgatgaaccacatgactgcccagtgcaagatt
gtgtcccaggccctgagcacgacttccttccctgcgctgctctgctcgattggtgtcacc
cctgtcgatggcactcccagccagccctactccgaatgctaccctgtagttctggatggt
gccatggtgggctgggtggagaaggaccttgcgccagcggtagccgacaccctacgtaat
tttaaggtgttgaaggagaagagggtgcctccctggacagaaattgtcctggtgcccatg
acgggcaaggccagcatctaccctgggctgctcatcttcaccacgccctgccgcatggtg
aggccagtccgcaacctggccctggggaaggaggagctgattggcacctttgaacagctg
tacacagacattgggatatttgaaggtgagcttgtgcctggagtgacaacacatcaggag
ctgtttcctcacagcatgctgagtgtggtggccaacttcattccttactctgaccacaac
caaagtcctaggaacatgtaccagtgccagatgggcaaacagaccatgggctttcccttg
cattcgttccaggagcggtctgataataagctttaccgcattcagactccccagagccct
ctagtcaggccctccatgtatgattactacaacatggacaactaccccattgggactaac
gctatagtggctgtcatttcctatactgggtatgacatggaagacgcaatgattgtgaac
aaggcctcatgggagagaggatttgctcatggctgtatttacaagactgagctaatagac
ctggatgagaaggtcaaggggggggagaactccctggtgtttggagtgaagcctggagat
ccgaaggtgatgcagaaactagacgatgacggcctcccaccagttggggcagtattgcaa
tatggagaccctttctacagctacatcaacatcaacactggccagagctttgttaatttt
tacaagagtaaagaaagttgtgtggtggacaatataaaagtctgcagcaatgacacgggc
acggggaagtttaagcgcgtctgcatcaccgtcagagtccctcgcaaccccaccattggg
gacaaatttgccagccggcatgggcagaagggcatcctgagccggctgtggcccacagag
gacatgcccttcaccgagagcggcatggtgcccgacatcctcttcaacccccatggcttc
ccctcccgtatgaccatcggcatgctgatcgagagcatggcgggcaagtccgcggccatg
cacggcctgtgccacgacgccacgcccttcaccttctccgaggagcactcggccctgcag
cacttcggagagatgctgaaggcggccggttacaactactatgggacagagcggatgtac
agtgggttaagcggcttggagctggaggccgacatcttcatcggggtggtctactaccag
aggctgcggcacatggtctcggataaattccaggtgaggactacgggcgccagggacaag
gtcaccaaccagccagttggcggcaggaacatccaggggggcatccgcttcggggagatg
gagcgggatgccctccttgcccatgggacttccttcctgctccatgaccgcctcttcaac
tgctcggaccgctcggtggcccaggtgtgtctggattgtggcaacctgctgtcccctctg
ctggagaagcccccaccctcctggtctgccacccgccagaggaagacggtctgcgctctc
tgcaagaagagcgattccatcgatgttgtctccattccttatgtcttccgctacttcata
gccgagctggctgccatgaatattaaggtcaaactggacattaagtag
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