Leishmania panamensis: LPMP_161310
Help
Entry
LPMP_161310 CDS
T06539
Name
(RefSeq) DNA-directed RNA polymerase I largest subunit, putative
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lpan
Leishmania panamensis
Pathway
lpan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPMP_161310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpan03021
]
LPMP_161310
Enzymes [BR:
lpan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPMP_161310
Transcription machinery [BR:
lpan03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
LPMP_161310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
Motif
Other DBs
NCBI-GeneID:
22573710
NCBI-ProteinID:
XP_010697659
UniProt:
A0A088S632
LinkDB
All DBs
Position
16:complement(530785..536217)
Genome browser
AA seq
1810 aa
AA seq
DB search
MSLTTAFPFHAYVGDLRTRTVHERKSGVSLSLMTSEDMARLALVEVRVRCGQEDRLAPWA
PAVRRDGTYATFYDTRMGNFDARTYPPQACSTCCNTLNSKYGNERCQGHYGYISMPRRYP
NDPNRSQERLSVINPHLTHEVEQLLQAECFFCHRFRVPEFDVIRYQQALRLVDCGLIGEA
LRFLDMVANARGQDMRSRRRRDANETVINDIPLMLDHIDMQLRRRGAAAPLPSGATAGKM
GARGDDRDTGAASVSAHVNGSGDGFLKPVFDVRNEICKQALRSFREFGNVCAHCQGISPR
ITTKNGHLFFYFNKKNADFNVANGGLTVTQLREWEEMNRRQGRSHTYFRTSWAREHIKQL
CQRESTILAALYPHLGEATLSMPYACSLPSMYYYKVLFVDKLLVPPLPLRLSSGVQVSES
GSIVPDASTRALSDVLQFVEQIEAYYVLANNSTPEHNLVSTAQEIAQEHNLRNLQAKVAE
VYTNVLESFAKKEGLFRMHMMGKRVNQACRSVISPDYLLEPNEVLLPRPFARALTFPELV
CSYSPARMLFLKRCVMNGPDMYPGATHLEISLTSGETRFVDLHVPELIRRQHAMKYFAMV
QTGSLTVHRHILDGDHLIFNRQPTLHKVSMMAYRAKVLSGLKTLRFHYVNGSSYNADFDG
DEMNIHVVQSLEARAELECLMDANLNYLVPTSGKPIRGFIQDHVVAGVLLTLRDKFLPHH
TFVQLVYNGIAPYMQKHGNPLSPHATLTELIPMPAVLKPHPLWTGKQLISAIVHYVTGVV
ESRGGTRKSNGVSMHGTSLIQPNTYTTTDPHTGELVSASRKCMEDGHVQFFESELITGIL
CKNQLGSCNLSVVHVIHEIYGPHVVGVLFGALGRVLSMSLQREGFSIGMDDMILLQEERR
TALLRELDNAPLSLPDDEARVMPVIMGMATNLQKEFVPGRMLRPFPQNQLLTMTMSGAKG
SNTNAIQMSLGLGQQLFDGRRVKRMNSGKTLPSFFVAEKRARSLGYAIGRFTSGIRPAEY
TFHAMAGRDGLIDTAVKTSRSGHLQRCLVKGLESLVVQWDHSVRDANGSVIQFLYGGDGL
DPMRTSSLQAWEVVKDNCVDLGRKMNVSTGVMTGEEEAEAAALRNSHGKRERAYETAAAM
RAAQRALLEAEAQRDPLPAHYKASLDTYLETKAQYPLFKKVSQVARWAKNGVLSEKLHEK
REESIRYYRDVMTELTTRRRVRAYCDAGEPVGLLAAQAAGEPSTQMTLNTFHSAGSTVTH
VTEGIPRLRELLIYASVQRVAIVVPVEKATETDEEAISRILQAGVATRLTDCMARVPVSA
AATAATDSGATTRAHTTSGYHYHVTRSAEGTQVTVALLFSKVLLVRKQHAMCMSRAEHLQ
SFTQTLKSFARQVVTALRGRSKDEREGAGGPMRGTTQDPSSQVDDSGAAAGGGGMSDNDD
DIDEQSTQMNTPALGAALAPSATGSELGRDDLIPEGDNDGGSTASDEDDDEEVADGSRRR
KGDSGSGNSPLCKKSRAEEDDNEEEDEDGNGSLWKSSRNSGVNSEVAATASGTMSYDCFP
TMCVMYGSKKYRVEIAPLLRTAATRDGVVALPEDFFIVNVSIQTSDQVVAVIPDVLESVL
VRQTFPSWLTQFDAVSYTRKAEDPTCGEMVFQGSAATIRSVTAFLALFTVRARAIKVKRA
RSTDIRDMCTSFGVESGYKALFDELEKLFKRYSVDYHHLTLIADAATHRGVWENYNFTGV
ISHSASPLFQMTFASSKRFLHTALTRGIGDELSSISSAIMVGERPRVGTALVKVGQDPQI
LRDVIEKNLA
NT seq
5433 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgaccactgctttcccctttcatgcgtacgtgggagatctgcgcacgcgcacc
gtccatgagcgcaagagcggtgtttccctctccctcatgacctcggaggacatggcacgc
ctcgcattggtggaggtgcgcgtgcgctgtgggcaggaggatcgactggcgccgtgggcc
ccggccgttcggcgggacggcacttacgccacgttctacgacacgcgcatgggcaacttt
gatgcccgcacgtaccctccgcaggcgtgctcgacgtgctgcaatacgctcaactccaaa
tacggcaatgaacgctgccagggccactacgggtacatcagtatgccgcgtcgctaccca
aacgacccgaaccgctcacaggaacgccttagtgtcattaacccacacctcacccacgag
gtggagcagctgctgcaggccgagtgctttttctgccaccgcttccgcgtgcccgagttc
gacgtgatccgctaccagcaggcactgcgcctcgtcgattgcggattgatcggcgaggca
ctgcggttcctggacatggtggcaaacgcccgcggacaggacatgcgcagccgacgccgc
cgtgacgcgaacgagaccgtcatcaacgacattcctcttatgctggatcacatcgacatg
cagctgcgtcgccgcggtgccgctgcaccacttccctctggggctacggcaggcaagatg
ggggcccgcggcgatgatagagacaccggtgcagctagcgtgtcggcgcacgtgaatggc
agcggtgacggcttcctcaagccggtcttcgacgtccgcaacgagatctgcaagcaggca
ctgcgcagcttccgcgagtttggcaacgtctgcgcgcactgccagggcatctcacctcgc
atcacgacaaagaatggacatctcttcttctacttcaacaagaagaacgcggacttcaac
gtggcaaacggtgggctgacagtgacgcagctgcgggaatgggaagagatgaaccgtcgc
caggggcgcagtcatacgtacttccgcacatcgtgggcgcgagagcacatcaagcagctg
tgccagcgcgagtctaccattcttgcagccctctacccacacctcggcgaggccacccta
agcatgccgtacgcctgctcgctcccgtcaatgtactactacaaggtgctctttgtggac
aagctgctcgtgccgccgctgcccctgcgcctgtcttcgggcgtgcaggtctccgagtcc
ggcagcattgtccctgacgccagcacacgtgccctatctgatgtcctccagtttgtcgag
cagatcgaggcgtactacgtcctcgcaaacaactccaccccagagcacaacctcgtcagc
acagcgcaagagattgcacaggagcacaacctgcggaacttgcaggccaaggtggcggag
gtgtacaccaacgtgctggagagctttgccaagaaggaaggtctgttccgcatgcacatg
atgggcaagcgtgtgaaccaagcatgccgtagcgtcatctcacccgactacttgctggaa
ccaaacgaggtgctactgccccgccccttcgcccgcgcgttgaccttcccggagctggtg
tgcagctactcaccagcgcgcatgctgttcctcaagcggtgtgtcatgaacggcccagat
atgtatccgggcgccactcacctggaaattagcctgacgagcggtgagacgcgcttcgtg
gacttgcacgtgccggagctgattcggcggcagcacgccatgaagtactttgcgatggta
cagaccggctccctcacggtccaccggcatatcctcgatggcgaccacctcatcttcaat
cgccagccgaccctgcacaaggtatccatgatggcgtatcgtgccaaagtgctctccggt
ttgaagacactccgcttccactacgttaacggcagctcgtacaacgccgactttgacggg
gacgagatgaacattcacgtcgtgcagagcctcgaggcaagggcggagcttgagtgtctg
atggacgccaacctcaactacctcgtcccgacgtctggcaagccgatccgcggctttatc
caggaccatgtggtcgccggggtgctgctgaccctccgcgacaaattcctgccgcatcac
acctttgtgcagcttgtttacaacggcatcgcaccgtacatgcagaagcacggcaatccg
ctcagcccgcacgcaacgctgacagagctgattccgatgcctgcggtactgaagccgcat
cccttatggacggggaagcagctcatttctgcgattgtccactacgtgacgggcgtggtg
gaaagtcgtggtggcacgcgcaagagcaatggtgtcagcatgcacggcacctctctcatc
cagccgaacacctacaccaccacggacccccacaccggtgagctcgtttcggcctcgcgc
aagtgcatggaggatggccacgtgcagttttttgagagtgagctcatcaccggcatcctg
tgcaagaaccaacttggctcctgcaacctctccgtcgtgcacgtcattcacgaaatctac
gggccgcacgtggttggcgtgctcttcggcgcgcttggtcgcgtgctgtctatgagcctg
cagcgcgaaggcttctccattggcatggatgacatgatcctcttgcaagaggagcggcgt
acggcgctgctgcgcgagctagacaatgcacccctcagcctccccgacgacgaggcgagg
gtgatgccggtaatcatggggatggcgacaaacctccagaaagaattcgtgccgggacgc
atgctgcggcctttcccgcaaaaccagctgctgaccatgaccatgtcgggtgcaaagggt
agcaacacgaatgcaattcagatgtcgctcggtcttggccagcaactcttcgacggacgc
cgggtgaagcgcatgaactcgggcaagacattgccgtcgttctttgttgcggagaagcga
gctcgctcgctgggctacgcgattggccgctttacctccggcattcgaccggcagagtac
acctttcacgccatggccggtcgagatgggctcatcgacacggccgtcaagacctcccgc
tctggtcacctgcagcggtgtttagtcaagggcctggagagcctcgttgtgcagtgggac
cactccgtgcgcgacgccaacggcagtgtgatacagttcctctacggtggtgacgggctc
gacccgatgcggacctcgtccctgcaggcgtgggaggttgtcaaggacaactgcgtcgac
ctcggtcgaaagatgaacgtgagcaccggcgtgatgacgggcgaggaagaggccgaggcg
gcggcgttgcgcaacagccatggcaagcgcgagcgcgcctacgagacggctgcggcgatg
cgtgcggcacagcgtgcattgctggaggcggaggcgcagcgcgacccactccccgcccac
tacaaggcgagtcttgacacgtacctggagaccaaggcgcagtacccgctcttcaagaag
gtgtcgcaagtcgcacgatgggccaagaacggcgtcttgagcgagaagctgcacgagaag
cgtgaggagagtatccggtactaccgcgacgtcatgacggagctaacgacgcggcggcgg
gtgcgggcctactgcgacgctggagagcccgtcggtctgctggcggcccaggccgctgga
gagccgtcaacgcagatgacgctcaacacgttccacagcgccgggtcgactgtgacgcac
gtgacggagggaattccgcgccttcgcgagctgctcatctacgcctctgtacagagggtg
gcaattgtggtgccggtggagaaagcgacggagactgacgaggaggcgatctcgcgcatt
ctgcaggccggcgtagcgacacggctgacagactgtatggcccgcgtacctgtttctgcg
gctgccaccgcggccacggacagcggtgccacgacgagggcgcacacgacctcagggtac
cactaccacgtcacccgcagcgccgagggcacgcaggtgacggttgccctcctcttctcc
aaggtgcttcttgtgcgaaagcagcacgccatgtgcatgtcgcgagccgagcaccttcag
tctttcacacagaccctgaagagctttgcacgacaagtagtgactgcattgcggggtcgc
tcaaaggacgagcgcgagggcgccggcggaccgatgcgtgggacgacgcaagacccatct
tcccaggtggatgacagcggcgctgcagccggcggcggtggcatgagtgacaacgacgac
gacatcgacgagcagtccacgcagatgaacacgccggcgcttggcgccgccttggcgccg
tctgccactggcagtgagcttggtcgggatgacttgatcccagaaggggacaacgacggc
ggtagcaccgctagtgacgaggacgatgacgaggaggtggcggacggctcgcggcgtcgc
aagggcgacagcggcagcggcaacagtcccctgtgcaagaagtctcgagcagaggaggac
gacaacgaggaggaagacgaggacggcaacggatcgctctggaagagctccaggaacagc
ggcgtcaacagcgaggtggctgccacagcatccggcacgatgagctacgactgctttccc
acaatgtgcgtcatgtacggcagcaagaagtaccgggtcgagatcgcgccgctgctgcgg
acggcggccacccgcgacggcgttgtggcgctgccggaagattttttcatagtgaacgtg
tcgatacagacatcagaccaggtggtcgccgtcatcccggatgtgctcgagagtgtgctg
gtccgacagacgttcccttcgtggctcacgcagtttgacgccgtctcgtacacgcgcaag
gccgaggacccgacgtgtggcgagatggttttccagggctccgcagcgaccatccgcagt
gtgacggcgttcctcgccctcttcaccgtccgcgcacgcgctatcaaagtgaagagggcg
cggtccaccgacattcgcgacatgtgcacctcctttggcgtggaaagcggctacaaagct
ctcttcgatgagctggagaagcttttcaagcgctactccgtcgactaccaccacctcact
ctcatcgccgacgcagcgacgcaccgtggcgtctgggaaaactacaactttaccggtgtc
atctcccacagcgccagcccgctcttccagatgacattcgcgtcgtcaaagcgcttcctg
cacacagccctgacgcgcggcatcggcgacgagttgagctccatcagctcggccatcatg
gttggtgagcggcctcgcgtcggaacagcactagtcaaggtgggccaggacccacagatc
ttgcgcgatgtcatcgagaagaaccttgcctga
DBGET
integrated database retrieval system
