Lolium perenne (perennial ryegrass): 127314836
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Entry
127314836 CDS
T08650
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lper
Lolium perenne (perennial ryegrass)
Pathway
lper03020
RNA polymerase
lper03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lper00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
127314836
09124 Replication and repair
03420 Nucleotide excision repair
127314836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lper03021
]
127314836
03400 DNA repair and recombination proteins [BR:
lper03400
]
127314836
Enzymes [BR:
lper01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
127314836
Transcription machinery [BR:
lper03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
127314836
DNA repair and recombination proteins [BR:
lper03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
127314836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
127314836
NCBI-ProteinID:
XP_051201325
LinkDB
All DBs
Position
7:139553248..139561552
Genome browser
AA seq
1859 aa
AA seq
DB search
MDARFPYSPAEVAKVQCVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI
DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILVPEEDPK
FKQALKIKNPKNRLRRIYDACKSKKTCDGGDELEAQDQQDTDEPVKKRSGCGAQQPNITV
DGMKMVAEFKATKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLSAKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKLIN
LIRFSAWHAETETGFITPGDTMVRIEKGELLSGTLCKKTLGTGTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETIGKAKNDVKELIKQAQEKSL
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKNEFDNVYRYELDDENWRPTYMMPEYVDDLKTIREFRNVFEAEVQKLEADRLQ
LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
PEVGKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRIT
NDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFEENEGFKP
DNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDASVYAESDY
LRGVTENIMVGQLAPIGTGGCGLYLNDKMLQQAIELQLPSYVDGLDYGMTPGRSPISGTP
YIDGGMMSPMLSPNFRASPITDAQFSPYVGGMSFSPIPSNYSPSSGGGYSPSSPVFSPGP
GQGYSPTSPSYSPASPSYSPTSPSYTPGSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
PTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRMMSPYSQTSPNYSPTSPSYSPTSPSYAQ
PSPSYSPTSPHTTSGGPSPDYSPTSPNYSPSASYSPTAPGYSPSSTGPQTTDKDDEIAP
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaggttcccgtactcgccggccgaggtggccaaggtgcagtgcgtgcagttc
ggcatcctcagcccggatgaaatcagacaaatgtcagtggtggtgatagaacatgcggag
actatggagagagggaaggccaaacctgggggtttgagtgaccctcgtttgggtacgatt
gaccgcaagatcaagtgtgatacatgtatggctgggatggccgaatgtccaggacatttt
ggtcaccttgagctcgcaaagccaatgttccacattggattcatcaagactgtgctctcc
ataatgcgctgtgtgtgcttcaactgttccaagatcctcgtgcctgaggaggaccccaag
ttcaagcaggctctgaaaatcaagaatccaaagaacagattaagacgaatctatgatgct
tgcaagagcaaaaagacttgcgatggtggtgatgaacttgaggctcaggatcagcaggac
actgatgaaccagtaaagaaaagaagtggttgtggtgctcagcagccaaatatcacagtt
gatggtatgaagatggttgcagaatttaaagcaacaaagaagaaaaatgatgatcaagat
caactccctgagccagtggagcggaagcaaattctctctgccgagagggtacttaatgtt
ctcaagcgtatcagtgacgaggactgtcttttattgggcctgagtgctaaatatgctcga
cctgactggatgatacttcaagtacttccgattcctccaccacctgtgagaccatctgtc
atgatggatacttcctccagaagtgaggatgatttgactcatcaattagcgatgataatt
cgacataatgagaatttgaggaggcaagagagaaatggagcaccagctcatattataaca
gagtttgctcagttgttgcagtttcacatcgcaacatactttgacaatgatcttcctgga
caaccaagggcaactcagcgttctggaaggcctattaagtcaatttgcagcaggctgaaa
gcaaaagaaggtcggattagaggaaatttgatggggaagcgtgttgatttctcagctcgt
acggtcatcacaccagatcccaatatcaacattgatcagttgggggtgccatggagtatt
gcattgaatctgacatacccagaaactgtaaccccatacaacattgagaggttgaaagag
ctagtagaatatgggcctcaccctccccctgggaagacaggtgccaagtacattatcagg
gaagatggtcagaggcttgatctacgctatgtgaagaaaagtagtgatcagcatttggag
ctgggctacaaggttgaaaggcacctcaatgatggagattttgttcttttcaatcgacaa
cccagtcttcacaaaatgtctattatggggcatcgcattaaaattatgccctactcaact
ttccggctaaacttgtctgtcacatcaccatacaatgctgattttgacggggatgaaatg
aatatgcatgttcctcagtcatttgagaccagggctgaagttctagagctgatgatggtg
ccaaaatgtattgtgtcacctcaagcaaataggcctgttatgggcattgtccaggacacg
cttcttgggtgtcggaaaatcaccaaaagggatactcttattgaaaaggatgtatttatg
aacatcttaatgtggtgggaagattttgatgggaaggttcctgcccctgccattttgaaa
ccaaggccaatttggactggcaaacaagttttcaacttgattatccccaagctaatcaat
ttgattagattttcagcctggcatgctgaaacagaaactggatttattactcctggtgat
accatggtccggatagagaagggagagcttctgtctggtacactttgcaaaaaaactctt
gggacaggaactgggagtcttattcatgttatttgggaggaagtagggccagatgctgca
cggaagttcttgggtcacacacagtggctggtcaactattggctcctgcaaaatgggttc
agtattggaattggggatacaattgcagatgcaagtaccatggaaaagattaatgagact
atcggaaaagctaagaatgacgtgaaggagcttattaaacaagcacaagaaaaaagtttg
gaacctgagccaggacgcacaatgatggagtcttttgaaaacagagtaaaccaggttctt
aacaaggctcgtgatgatgctgggagtagtgctcagaagagtttatctgagagtaacaat
ttgaaagctatggtcactgcaggctcaaaaggaagtttcattaatatttcacaaatgact
gcttgtgtcggacaacagaatgttgagggcaagcggatcccatttggttttgttgatcgt
acattgccccacttcacaaaagatgactatggtcctgaaagccgtggatttgtggagaac
tcttaccttcgaggtctaacaccacaggaatttttcttccatgctatgggtggtagagaa
ggtcttattgatactgccgtgaaaacttctgaaactggctatattcagcggcggcttgtg
aaggctatggaggacatcatggtcaagtatgatggtacagtgagaaattctttaggtgat
gtcattcagttcttgtatggagaagatggcatggatgctgtgtggattgaatcacagaaa
ttggactccctgaagatgaaaaagaatgagttcgataatgtatatcggtatgaactggat
gatgagaactggaggcctacgtacatgatgcctgaatatgttgatgatttgaagaccatt
cgagaattcagaaatgtgtttgaggcagaggttcagaaattagaagctgaccgtttacag
cttgggactgagattaccacaactggcgacaacacatggcctatgcctgtgaatctcaag
cggctgatctggaatgctcaaaagacattcaagattgatttaagaagaccttctgacatg
cacccgatggaaattgttgaagcaatagataagctgcaagaaagacttaaggttgtccct
ggtgatgatgcaatgagcattgaagctcagaagaacgctactttgttcttcaatatcctg
cttcgtagcacatttgctagcaagagggtcttgaaagaatacaggcttacaaaggaatct
tttgaatgggtcattggtgagattgaatcgagattccttcagtctttggtagctcctggg
gaaatgattgggtgtgtggctgcacagtccattggagaaccagcaactcagatgacgctg
aatactttccattatgctggtgtcagtgcaaagaatgttacccttggtgttcccaggttg
agagagatcattaacgttgccaagaagataaagactccatcactgtctgttttcctgaag
cctgaggtgggcaagaagaaagaattggccaagaatgtccaatgtgccctggagtacact
acactacgtagtgtgacgcatgccactgagatatggtacgatcctgatcctctgggaacc
atcattgaagaggatgtggaatttgtcagatcatactatgagatgcctgatgaggatatt
gacccggataagatctctccttggctgctgcgtattgaactgaaccgtgagatgatggtt
gataagaagttgagcatggctgatatcgcagagaagatcaatcatgaatttgatgatgac
ttatcatgcatattcaatgatgataacgcagataagctcatcctccgtgtccgtataaca
aatgatgaagctccaaagggagaaatacaggatgaatctgccgaggatgatgtctttctc
aagaagatcgaaggtaacatgttgaccgagatggcccttcgaggcattccagacattaac
aaggtcttcatcaaatacgggaaggtcaataaatttgaggaaaatgaaggtttcaaaccc
gataacgagtggatgcttgatacagaaggcgtcaacctcttggcggtgatgtgtcatgag
gatgttgatgctacaaggacaacaagtaatcatttaattgaagtcattgaagttcttggg
attgaggctgtccgcaggtctctcttggatgagctgagggtggtcatatcttttgatgga
tcttatgtgaattacaggcatctggccattctatgtgatacaatgacatacagaggtcat
ctgatggccattactaggcacggcataaatcgtaatgacacagggcctcttatgagatgt
tcctttgaagaaactgtggatatcttgcttgatgcttctgtatatgccgaatccgactac
ctgagaggtgtcactgagaacattatggttggccagcttgctcctattggtacaggaggc
tgtggattgtatctgaatgacaagatgctacagcaggccattgagcttcaactcccgagc
tatgttgacggtcttgactatggcatgacaccagggcgttcacccatctctgggacacct
tacattgatggaggaatgatgtcaccaatgctgagtccgaatttcagggcttcccccatt
acagatgctcagttctctccgtatgttggtggcatgtcgttctcgcctattccgtcaaac
tacagcccatcctctgggggtggttacagtccatcttctcctgttttcagcccagggcca
gggcaaggttacagccccacttctccatcatacagccctgcatcacccagctacagtccc
acctctccatcatatactcctggctctccttcctacagtcctactagcccatcatactct
ccgaccagtccatcatactcaccaacatctccgagctacagtcctacatcgccgagctac
agccccacatcgccgagctacagccccacatcgccaagctacagccccacatcgccgagc
tacagccccacatcgccagtttatagcccaacctctccagcatatagcccgacatctcct
gcatacagcccgacgtcgccatcttacagcccaacatcaccatcttatagcccgacgtcg
ccatcatacagtcctacatctccttcatacagccccacgtcaccatcatacagccccacg
tctccttcatacagccctacatctccatcatacagccctacatcgccctcatacagccca
acatcgcctgcatacagccctacatcgcccggctacagcccgacgtctcccagctatagc
ccaacttcgccgaattacagtccaacttcaccgagctacaatccttcttcggccaagtac
agtccttcacatgcttactctccaagcagcccaaggatgatgagcccttatagccaaact
tctccaaactacagccccacctcaccgtcttactcgcccacctcaccgtcgtatgcacaa
ccaagcccgtcatatagcccaaccagcccgcacactacctccggaggacctagcccagat
tacagcccaacttctccaaattacagccctagcgcaagctactcccccactgcaccaggc
tactccccgtcatccaccgggccgcaaactactgacaaggacgacgagattgctccttga
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integrated database retrieval system
