Lytechinus pictus (painted urchin): 129270824
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Entry
129270824 CDS
T09066
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lpic
Lytechinus pictus (painted urchin)
Pathway
lpic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lpic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129270824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lpic03021
]
129270824
Enzymes [BR:
lpic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129270824
Transcription machinery [BR:
lpic03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129270824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
129270824
NCBI-ProteinID:
XP_054764131
LinkDB
All DBs
Position
11:complement(15306337..15348229)
Genome browser
AA seq
1734 aa
AA seq
DB search
MSVREIPSKRVDSVRFSTYSSEDLKQLSVKELTNPRSFDDLGHPTLGGLYDPALGPSDRD
ELCGTCSLGQFHCPGHMGHVTLPLPVFNPLFFPLVRQLLHGSCLECNHLLAPRWTLCLVV
HQLRCLDHGLLGSVGDLAEVASQVISESDDEGLVDEMETSLREYVDKILSELKKDETSEA
RHIEECRRNVIQSFIRQHIASRGRKCPLCKKPVREIRPLHNSVILTKVTSGTGQGLQMVY
LSPHEARKHLRKLMQNDGKVLRHIFGVLDLPSMHGEDSTIDQFFLEALPVIPSKFRPVST
AGDKTFENPQTGNLSKVLKDCHVLRLLLRAMRQSTDQEGSLDAPVKTEFEVDSRDKENED
QSILSSVPGKTLPEKLQNALTQLQTHVNCVIDSDLDKVSTDKAPGIKQLLERKEGLFRKH
MMGKRVNYAARSVISPDPYINTDEIGIPEVIAKRLTYPQPVTDWNAQELRQMVMNGPDVH
PGALLIENEDGSQVKLRADNQSQRESVAKRLLTPSNINKQNIGSKKVHRHLQTGDIVLLN
RQPTLHKPGIMAHKVRVLPGEKTLRLHYSSCKTYNADFDGDEMNVHFPQNELGRAEALTI
VSTNHQYLVPKDGTPLGGLIQDHIVAGVRMTVRGRFFTRLEYQQLVYCSLTDKEGPVKCL
PPCMIKPTLLWSGKQLISTVIINTIPEGCKPLDFVGKSKITNKAWIKGKPHKPKAGGSAL
IGLDMCESEVIVRAGELLSGVLDKGNYGPTPYGLVHCIYELYGGSIAGKLLSHFGRLFTT
FLQQHTGFTLGPEDIIVTEKADEDRRETLDQTKDCGSEAVAKALGVEEFTGVHDNRLAKK
YEDAHRKPDGKDLKEIDREMKTKTDHFSNHVGNTCLGSGLLKHFPENNLQLVVLSGAKGS
VVNCLQISCLLGQIELEGRRPPLMVSGRSLPSFLPYDTSPRSGGYVAGRFLTGIKPQEYF
FHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVNYDQTVRDSDGSIVQFQYGEDGLD
ISRTPFLHKEQFPFLLQNSKAHLPSRSKNPALSSDPSQAEKLFRKIKRWKEKHSHRPRSE
RRSPFLEFCNKEYAAILEQIQSDEDDVLRAYNKAKKEIIKRWREVTDKHRYEKKTTPCPD
PVSTQMRPDRHLGAISEKLETLIHDYLDSRLPTSKDIDGTEDETKLKSLMYSKYQRALCE
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGDMNVTLGIPRLREILMVASANIKTPSMTI
PFINPDISAKKIGRIRRQLGRVHLSNVLEDIDIWETYEFPSAHDHYRVYKIRLNFLPHID
YKDDHNATPSSILSYIETTFLKQFLEIVKRKMKDLKKANFALSKKSKSDLLGGGAAATRG
ENGTDPDMQEDNAASVSTKRGSISSEGSGDEEGDGTASKYKKKHEEEKEYDDDEGEMEQE
MEGEWEEIIDSGDEGSGSSKADSPATPEGDGEDDGGGGDADDETVAEDLLTSKPEESSPS
SSKKKKQPVNISDREKEQRILAAVNISPMMEMYDFDADEQLWCEFKFKVELTDNKLDMAS
LVEVVSRQATVHHVPGIYRCFVSGQGSGETRLLTEGVNLHELYKYDKLLQLNKAYTNDIH
AMANVYGIEAACKAIIKEVCDVFSVYGITVDPRHLSLVADYMTFEGVYRPFNRIGLESNA
SPLQKMTFESCMKFLREATIQGAKDNLQSPSARLVVGRVVNGGTGCFDLIQPLV
NT seq
5205 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgagagagattcctagtaaacgtgttgactctgtgaggtttagcacgtacagc
agcgaagacctgaagcagttgagtgtgaaagaattaactaatccaagatcttttgatgac
ctcgggcacccaaccttaggaggcctctatgaccctgctctaggtccaagtgatcgagat
gagctctgtggaacatgcagcttgggtcagttccattgtccaggtcacatgggtcatgtg
accctgccacttcctgtcttcaatccgctcttctttccgcttgtgcgtcagctccttcat
ggtagttgtttagagtgtaaccacctgctcgcccctcgatggaccctgtgtctggtagtc
caccagctccgttgcttggatcacggtttgttgggtagcgtaggagaccttgctgaagtg
gccagtcaggtcatctctgaatcggatgatgaaggattggttgatgagatggagacgagt
ctaagagaatatgtggataagatcctatctgaattaaagaaagacgaaacctccgaagca
cgtcacattgaggagtgtcgacgtaatgtcatccagtccttcatacgtcagcacatagcg
tcacgcggtaggaagtgtcctctgtgcaagaaaccggtccgtgagatccgtcctctccat
aatagcgttatcctcaccaaggtgaccagtggtactggtcaagggcttcagatggtctat
ctgtctcctcatgaagctaggaaacatcttcggaaactgatgcaaaatgatggtaaagtt
ttacgtcatatttttggagttctagatctgcctagcatgcatggtgaagactccaccata
gatcagttcttcctagaagcactcccagtcattccctcaaagtttagaccggtatctact
gcgggagacaagacctttgagaatccacagaccggtaacctctccaaggtcctcaaggat
tgtcacgtattgcgtctcttgctgcgggccatgaggcaatctaccgaccaggaaggatcc
ctcgatgccccagtcaagactgaatttgaggtcgactcaagagacaaagagaatgaagat
cagagcatcttgagctctgtcccagggaagactttaccggaaaaacttcaaaatgctctg
acccaacttcagacccatgttaattgtgtcattgacagtgaccttgacaaggtttctacc
gataaagcacccggcatcaaacagcttcttgagaggaaagagggtctcttcaggaagcac
atgatgggcaaacgtgtcaactacgcggcccgttccgtcatctctcccgatccttacatc
aacacggatgagataggtatcccagaggtcattgcaaagcgtctgacgtacccccagccc
gtgaccgactggaacgcccaggaactcagacagatggttatgaacggacctgatgttcat
cctggagctttactgattgagaatgaggatgggtcgcaggtcaaactacgagcagataac
caatcacagagagaatccgttgctaagagactgcttacacctagtaacatcaacaaacaa
aacattggatcaaagaaggttcatagacaccttcagaccggtgatatagtgttactgaat
cgtcagccaacactacacaaaccaggcatcatggctcataaggtcagagttcttcctggt
gagaagacgctgcgtttacactactcatcatgtaagacgtacaacgctgactttgatgga
gacgagatgaacgtgcactttcctcagaatgaactaggcagagcagaggcgcttaccatc
gtgagcaccaatcatcagtatcttgtccctaaggatggcacccctctaggaggtcttatc
caagatcatatcgtcgctggagttaggatgacggtcagaggtagattctttacaaggctt
gaataccaacagctagtttactgctcactcactgataaagagggtcctgtcaagtgcctt
cctccgtgtatgataaagcccaccctcttatggtccgggaagcaactgatctctaccgtc
atcatcaacaccataccagagggatgtaaaccgcttgactttgtcgggaaatccaagatc
acaaataaggcctggataaaaggcaagccgcacaaacccaaagcaggtggtagcgccctc
attggtctcgacatgtgtgagtctgaggtcatagtacgagcaggggagcttctctctggt
gtgctggacaagggtaactatggtcctacaccgtatggactggtccactgcatttatgag
ctttatggaggtagcatagctggtaaactactgagtcattttggacgtctcttcacaacg
ttcttacaacagcacaccggatttacgctaggaccagaggatatcattgtcacagaaaag
gctgatgaggaccgtcgtgaaacactggatcaaactaaagactgtggatcagaggccgtt
gctaaggcattgggtgtagaggaattcaccggtgtccatgacaacagacttgcaaaaaaa
tatgaagatgcccacagaaagcctgatgggaaagatttgaaggagattgatagagagatg
aaaacaaagacagaccatttcagtaatcatgtcggtaatacctgcctggggtctgggctg
ctcaagcatttccctgaaaacaatcttcagctggtggtcctgtctggtgctaagggatct
gtggtgaactgtcttcagatctcctgtctgcttggtcagattgagttagaaggacgtcgt
ccacccctgatggtcagcggacgttctttaccatccttcctcccgtatgataccagtcct
aggtccggtggttacgtggctggtaggttcctgacagggatcaaacctcaggaatacttc
ttccattgcatggccggtagagagggtctggtagatacagcagttaagactagtcggagt
ggatacctacagagatgtatcatcaaacatcttgaaggattggtcgtcaactatgatcaa
acggtaagagatagtgatggtagtatagtccagttccagtatggtgaagatggtctagat
atatccaggactccgttcctacacaaggaacagtttcctttccttttacagaactccaaa
gcacatctcccatcaaggtcaaagaaccctgcactgtccagtgacccaagccaagctgag
aaactcttcagaaagatcaagagatggaaagagaagcattcccatcgtccccgatccgaa
agaagatctcctttcctagagttctgtaacaaggaatatgcagccatcttagaacagatt
caatctgatgaagacgatgtattgagggcttataacaaggctaagaaagagatcattaag
agatggagggaggtcactgataagcataggtacgagaagaagacgactccttgtcccgac
cctgtaagtactcagatgagaccggacagacatcttggagcaatctcagagaaactagag
actctcatccatgactatctagactccaggttaccgacatcaaaagatatagatgggact
gaagatgaaaccaaactgaagagtttgatgtatagcaagtatcagagagcgctctgtgag
ccgggagaagctgtgggtctccttgcagcccagtccattggagagccttcaactcagatg
acactgaatacgtttcattttgctggtcgtggtgacatgaatgtaacactgggtattccc
aggctcagggagattctaatggtagctagtgccaatatcaagacacctagtatgacgata
ccgtttatcaatcctgacatatcggctaagaagattggcaggatacggagacaactcggt
agagttcatctatctaatgtgcttgaagatatagacatctgggaaacctatgagttcccg
tcagcacatgatcattatcgagtttacaagatcagactcaacttcttgcctcacatagat
tataaggatgatcacaatgcaacgccatcaagcatcttgtcttacatcgaaacaacgttc
ctaaagcagttcttagaaatcgtcaagaggaaaatgaaggatctcaagaaagcaaacttt
gcattatccaagaaatctaagtctgacttacttggagggggtgctgccgccacccgaggt
gaaaatggaacagacccagacatgcaggaagacaatgcagcctctgtatcaacaaagaga
gggtccatttcatcggaggggagcggagatgaggagggtgatggtacagcctctaaatac
aagaagaaacatgaagaggagaaggagtatgatgacgatgaaggagaaatggaacaagag
atggaaggagaatgggaagaaatcatagattcaggtgatgaaggaagcggtagcagtaaa
gcagatagccctgctactcctgaaggagatggagaggatgatggtggtggtggtgatgct
gatgatgaaacggttgcagaagacttgctcacatccaagccagaggaatcatcaccatca
tcgtctaagaagaagaaacaaccagttaacatcagtgatagggagaaagaacagagaata
ctggctgcagtgaacataagtccaatgatggagatgtatgactttgatgccgatgaacaa
ctgtggtgtgaattcaaattcaaggttgagctgactgataataaactagacatggcctca
ctggtggaggtagtctcaagacaagccactgttcaccacgtacctgggatctatcgctgt
tttgtgtctggtcaagggtctggagagactagactactcacagagggagtcaatctacat
gaactctacaagtatgacaaactattgcagctaaacaaggcttatactaatgacatccat
gccatggccaatgtgtatgggatagaagcagcttgcaaagctatcatcaaggaggtgtgt
gatgtgttctcagtatacggcatcacagtggaccctcgtcatctctcattggttgcggac
tatatgacctttgagggcgtctatcgacctttcaatcggattggtctggagtccaatgcc
tctccgttacaaaagatgacgtttgagagctgtatgaagttcctgagagaagcaactata
caaggtgcaaaagacaatctccagtctccatcagcaaggcttgttgtaggtagagtggtc
aacggtggaacagggtgctttgatctcatacaacctctcgtgtag
DBGET
integrated database retrieval system
