Lolium rigidum (rigid ryegrass): 124687263
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Entry
124687263 CDS
T09103
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03020
RNA polymerase
lrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124687263
09124 Replication and repair
03420 Nucleotide excision repair
124687263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124687263
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124687263
Enzymes [BR:
lrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124687263
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124687263
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124687263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
124687263
NCBI-ProteinID:
XP_047077017
LinkDB
All DBs
Position
1:194708580..194716345
Genome browser
AA seq
1750 aa
AA seq
DB search
MEVMSVLEIDSTDGLSDPKLGATVNHKRQARCATCDAGPADCPGHFGHLVLAKPIFHIGF
MRTVLAVLRCVCISCSRLLANQGIVTKALRIRNSKNRLKYMSEACKGHTECLEGDCPETQ
NKKDVDSTKIKSGCGHVQPIIRVEGMGIKAEYKAPKRNLGCTEQLPEADEQRQSLSPEKV
MEILKLISDSDCLLLGLNPRYARPEWMILQVLPIPPPSVRPSVVMSNSMRSEDDLTHQLA
MIIRQNKDLRMKIQNGCAAHIINESVQILQFLVATYFNNELSGQPKSTQLSGRPIKSICC
RLKSKEGRVRGNLMGKRVDFSARTVITPDPNISIDELGVPWSIALNLTFPETVTPYNIER
LKQLVEYGAYPPPCKTGAKFIVRDDGRRFDLRYLRKSSDQHLEVGFKVERHLADGDYVVF
NRQPSLHKMSIMGHRVKIMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSFETRAEVLEL
MMVPKCIVSPQSNRPVMGIVQDTLLGCFKISRRDTFIEKDVFMNILMWWEDFDGKIPTPA
ILKPKLMWTGKQVFSLIIPRQINLIRFSAWHSEVEIGFNTPGDTVVRIEKGHLLSGTLCK
RTLGTSTGSLVHAIWAEIGPDAASKFLSHTQWLVNYWLLQNGFSIGIGDSIVDMATMEKI
TDIISKAKNGVKDLIQLSRDRQLGAEPGQTVLEAFENRVNQVLNKARDDAASCAQRSLSD
SNNLKAMVAAGSKGSFINIAQMTACVGQQNVVGKRIPFGFTNRTLPHFLKDDYGPESRGF
VENSYILGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNS
LSHVIQFLYGEDGMDAVSIESQKLESLKMKKTEFDSTFQYELHDDNWNPGYLLQQHATDL
RDIPEIREVFDSEVQIIQADRYLLASEIAKNGENTWPMPVNLKRIIWNAQKTFKIDVNKP
SLDLHPMEIVEAVDKLQARLRVVDGVDPISIEAQKNATLLFNILLRSTLASKRVLKEYGL
TRDAFQWVIGEIETRFHQSLVSPGEMVGCVAAQSIGEPTTQMTLNTFHYAGVSAKNVTLG
VPRLIEIINVAKSIKTPSLSVYLKPEVNKKKELAKNVQCALEYTSLQSVTRATELWYDPD
PTDTVIEEDAELVKSFCEMPDDDIDLETVSPWLLRIELDREMMIDKKLSIINIVDKIKYE
FGTDLTCIYSDDNADKLILRVRMVKHEKEVPREGDDFAQDELFLKQIESFMLAKMSLCGI
PEISKVFIKSGKITKFNRKEGFITDVEWMLDTEGVNLLQVLCNEDVDASRTTSNHLIEVI
EVLGIEAARRTLLHELREVISFDGSYVNYRHLAILCDLMTHKGYLMAITRHGINKNDTGP
LMRCSFEETAMILLDAAAYAETDPVGGVSENIMLGQLAPVGTGACELYLNTGMLQQAMDT
DLPSYTDGLGDAMKGTYSQLSEETPYLSSPSLLSPYESSPFGDTRFSPYISGLTSSPFRT
TNQYRPVPPSYSPITPPYSPFNSTPNSYNPISPVYNHVSQVYNPVSPVYNSASSVHGSMS
PVYNSASSVHGSMSPVHGFMTPRYAPASPVYDSPPPSYRPTSPMPYSASPYYSPTTPVYS
PSSPVYSPYSLVYSPHDPSVASYSPTSPLYSPTAPSYSPMSPQYTPSSPSYSPNSAADSN
PASQIYSPTSPHYSPTSPDYSLAHDTEYSPTSPRYSPTSPGYSLAHDTDYSPTSPGYSPT
SPGYSPNVQN
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaatgtctgtgctggaaatcgactccacagatggcctgtcagatccaaaacta
ggcgccactgttaaccacaagaggcaggctcgatgcgcaacatgtgatgcaggtccagct
gactgtcctggccactttggccaccttgtgctcgccaagcccatctttcacattggcttc
atgcggactgtgctagcagtgctccgatgcgtctgcatcagttgctctaggctccttgcc
aaccagggcatagtgacgaaagctctgagaattagaaattcgaaaaataggttaaaatat
atgtctgaagcttgcaaaggacatactgaatgtcttgagggtgattgtcctgagactcag
aataagaaggatgtagatagtacaaagataaaaagtggctgtggtcatgtacagccaatc
atcagagttgaaggcatgggcattaaagctgaatataaagctccgaagaggaatttggga
tgcactgagcaacttcctgaagctgatgaacagagacagagcctttctccagagaaggtt
atggaaatcctcaaacttataagtgacagcgattgccttctattaggcttgaatccaagg
tatgctcgtcctgaatggatgatactgcaagtgcttcctattcctccaccatcagttaga
ccttctgttgtcatgagcaattccatgaggagtgaggatgatctgacacatcagcttgcg
atgattattaggcagaacaaagatttgagaatgaaaatacaaaatggatgtgcagcccac
ataatcaatgagtctgtgcagatcttgcagtttctggttgcgacttacttcaacaatgaa
ctctcgggtcaaccaaagtctacacagctttccggacggcctatcaagtctatatgctgc
cgacttaaatctaaagaaggtcgtgttcgagggaacctgatgggtaaacgtgttgacttc
tcagctcggaccgtcatcacaccagatccgaacattagcatagatgagctgggggtgccc
tggagtatagctttgaacttaacattcccagagacagttactccatataatatcgagaga
ctcaagcaacttgtagagtatggggcctatcctcccccttgcaagactggagccaagttc
atagtaagggatgacgggaggaggtttgatctcagatacctgaggaaaagcagtgaccag
catttagaagttggtttcaaggttgagaggcacttggctgatggagactatgttgttttt
aatcgacaacctagtctccacaaaatgtccatcatggggcatcgtgttaaaattatgcct
tattcaaccttccggttgaacttgtcagttactacaccatataatgcagattttgacggt
gatgaaatgaacatgcatgttcctcagtcatttgaaaccagagcagaggttctggaactg
atgatggttccaaaatgcattgtttctccacaatctaatcggcccgttatggggattgtc
caggatacactccttggatgtttcaaaatttccagaagagatacattcattgaaaaggac
gtgtttatgaatatcttgatgtggtgggaagactttgatgggaagatccctacgcctgcc
atattgaaaccaaagctgatgtggactgggaagcaagttttcagcttgatcattccaagg
cagattaatcttataaggttttcagcttggcactcagaagtggagattggattcaatact
cctggggacactgttgttaggatagagaagggacatcttctatctggtactctctgcaaa
agaactcttggaacctcaactggaagtttagtccatgccatatgggcggagattggaccg
gatgctgctagcaagtttttaagtcatacgcaatggcttgtgaactattggcttttacag
aatggctttagtattggaattggtgatagcattgttgacatggcaacaatggaaaaaatt
actgatataatttcaaaagcaaagaatggggtgaaggaccttatccaactttcacgtgac
cgacagttaggggctgagccagggcaaactgtgctggaagcgtttgaaaatagagtaaat
caggtattgaacaaggcccgtgatgatgcagcaagttgtgctcagaggagcttatctgat
agcaataatttaaaggcaatggtcgctgctggctctaagggaagtttcattaatattgca
caaatgactgcttgtgttggtcagcagaatgttgtgggcaagcgcattccatttggcttc
actaatcgaacactgcctcacttcctaaaagatgattatggacctgaaagccgtggtttt
gtggagaattcatatattcttggtctaacaccccaggaattcttctttcatgctatgggt
ggtagagaaggtctcattgacactgcagttaagacatctgaaactggatatattcagcgt
cgtcttgtcaaggctatggaagatgtcatggtcaaatatgacggtacagttaggaactca
ctgagccacgtaattcagttcttgtatggtgaagatgggatggatgctgtatctattgag
tcacaaaaactggagtctctgaagatgaaaaagactgagtttgacagcactttccagtat
gagttgcatgatgacaactggaacccaggttacttgcttcagcaacatgctacggacttg
agagacattcctgaaatcagggaggtgtttgattccgaggtccaaataatacaagctgac
cgctacctgctcgcgagcgagattgctaaaaatggcgaaaatacatggccgatgccagtg
aatttaaaaaggatcatatggaatgctcagaagacatttaagattgatgtgaataagccc
tccctcgatttgcacccaatggagattgttgaagctgtggataagctgcaagccagacta
cgagttgttgatggtgtcgatccaataagcatcgaggctcaaaagaatgctaccttgctg
ttcaatatcctacttcgcagcacgctagctagcaagagagtcttgaaagagtatgggctt
accagggacgctttccagtgggttattggggaaatagaaacccgttttcatcagtccttg
gtatctccaggtgaaatggttggttgtgtggctgcacaatccattggtgaacctacaacc
caaatgacactgaacacgttccattatgccggtgtcagtgctaagaatgtcactctaggt
gttcccaggctgatagaaatcattaatgttgcaaagagcataaaaactccttcattgtct
gtttacctgaaacctgaggtgaacaagaagaaagaactggctaagaacgttcagtgtgct
ttggaatacacctctctgcagagtgtgacccgtgctaccgagctatggtatgaccctgat
cctacagatactgttattgaagaagatgctgaacttgtcaagtcattctgtgaaatgcct
gatgatgacattgacctggagacagtgtccccttggttgcttcgaattgaactggatcgt
gagatgatgattgacaagaagttgagcatcattaacattgtggataagatcaaatatgag
ttcggcactgacctaacatgcatctactctgatgataatgccgacaagcttatccttaga
gtgcgcatggttaagcatgaaaaggaagttccaagagaaggtgatgattttgctcaggat
gagctcttcctcaaacagatagagagctttatgttggcaaagatgtcgctctgcggcata
cctgagatatccaaggtgtttatcaagtctggaaagatcaccaagttcaatcgaaaggaa
gggttcataacagatgtggagtggatgcttgacacggaaggggttaatctcttgcaagta
ctgtgcaatgaagatgttgatgcgtcgagaacgactagcaaccatctgattgaagtaata
gaagtgcttggaattgaggctgctcgccgaacattgttgcatgagttgcgggaagtcatc
tcctttgatggatcttatgtgaactatcgtcatttggcaattctctgcgacttaatgaca
cacaaaggttatttgatggccatcaccaggcatggcatcaacaagaatgacacagggccc
cttatgagatgctcatttgaggaaactgctatgatcttactagatgctgctgcatatgcc
gaaactgatccagttggaggtgtctctgagaacattatgctgggtcagctggcaccggtt
ggcacaggggcctgtgagttgtatctgaacactgggatgttgcagcaggccatggacact
gatctcccaagctacactgatggtctaggtgatgccatgaagggcacatattcgcagctc
tctgaagaaactccttatctgtcatcaccgagtttgctaagcccatatgaatcttcacca
tttggagatactcggttttcaccctatatcagtggacttacttcctcgccgttcagaaca
acaaatcaataccgtccagtcccaccaagttacagcccaataactccaccatactccccc
tttaactctacacccaattcttataatcccatctcaccggtgtacaatcatgtatcgcaa
gtctacaatcctgtgtcaccggtatacaattctgcctcttcggtccatggttccatgtca
ccggtatacaattctgcctcttcggtccatggttccatgtcaccggtgcacggtttcatg
acacctcgatatgctcctgcttctccagtttatgattccccgccaccttcttacaggcct
acgtcgcccatgccctattcggcttcaccttattacagccctaccacccctgtatatagc
ccttcttcacctgtttacagtccatattcattggtgtacagtcctcatgatccctccgtg
gcatcctatagcccgacttcccctctgtacagtccaactgcacctagttactctcctatg
tcaccccagtataccccaagctcgccaagttactctcctaactctgctgctgacagcaac
ccagcttcccagatttacagccctacttctccccattactcccccacttcacccgattac
tcattggctcatgacacagagtacagcccgacttctccccgatactctcccacgtcaccc
ggttactccctggctcatgacacagactacagccccacctctcctggttatagcccgact
tcaccaggctacagtccaaatgtgcagaattag
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integrated database retrieval system
