Lacticaseibacillus rhamnosus GG: LGG_01617
Help
Entry
LGG_01617 CDS
T00987
Symbol
polC
Name
(GenBank) DNA polymerase III alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lrh
Lacticaseibacillus rhamnosus GG
Pathway
lrh03030
DNA replication
lrh03430
Mismatch repair
lrh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LGG_01617 (polC)
03430 Mismatch repair
LGG_01617 (polC)
03440 Homologous recombination
LGG_01617 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lrh03032
]
LGG_01617 (polC)
03400 DNA repair and recombination proteins [BR:
lrh03400
]
LGG_01617 (polC)
Enzymes [BR:
lrh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LGG_01617 (polC)
DNA replication proteins [BR:
lrh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LGG_01617 (polC)
DNA repair and recombination proteins [BR:
lrh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LGG_01617 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
HHH_3
DEDDh_C
T2SSK
RNase_H_2
Zn-ribbon_8
YhfH
DUF655
Motif
Other DBs
NCBI-ProteinID:
CAR87512
UniProt:
A0A7S7JHC4
LinkDB
All DBs
Position
complement(1642560..1646894)
Genome browser
AA seq
1444 aa
AA seq
DB search
MALSQHEMFEKLMDQLDLPADVRHDPSLADGSVQAVTIHEQSQRYDFTLAFPTILPFQIF
NTIATQLPIAFKQIAATRLTIAVAQPTITDELLAQYWPYVVQNSEIGTGIVRELCEKQVP
TLVNNRAVITAENEQIRQYLINQGLGKLEATYQQVGFSGLRMQAQVDEEQAAQSLAAFEA
QKAAQTAKMAQAAAEVVKRQAAKQKQEPTNGPVQMGRQLKMSDPPQQMVTITQEERSVTV
EGYVFDVEVRELRSKRQLLIFKITDYSSSFIAKKFSNGADDEAMFARIKKGQWLRVRGSV
QEDNYSRELTINAQDIQTVSHPDPTDDVEGEKRVELHLHTNMSQMDATNSITDFVNRAKA
WGHKAIAVTDHAGLQAYPEAHTAAAKAGLKMLYGVEINLVDDGTPVAYRADEPRVLADAE
YVVFDVETTGLSAVYDKVIELAAVKMKDGQVIDQFEEMIDPGFPLSELTINLTHITDDMV
HGSKSEEEVFRLFQQFCDGAIMVGHNVTFDVGFLDNGYERHGLADIDNPVIDTLELSRML
HPERKNHKLDTLAKQYKVSLEHHHRANADAEATGYLLYALEKEAAKMYNMTKLNQLNDRV
GAGEAYKAARPSHAIVFAKTQAGLKNLFKLVSLSNVKYFYRVPRVPRSQLQKLREGLLVG
SACSSGEVFTAMMQKGEAEARAKAAFYDYLEIQPPAVYQPLLEADLIKGESHLKDILQKI
VKIGDELEKPVVVTGDVHYLDQHDAIYRKILIHSQGGANPLNRHSLPDVHFRSTREMLDD
FSWLGEEKAQQLVVTNSNLIADWIDDNITPVKDKLYTPEVPGVEEKLKHDVMATAYELYG
NPLPEIVAQRLDKELKSIIGNGFSVIYNIAQRLVLKSNKDGYLVGSRGSVGSSLAATMAE
ITEVNPLPPHYRCPKCQYSEFFTHGEVGSGFDLPDKTCPKCGTELHKDGHDIPFETFLGF
HGDKVPDIDLNFSGDYQPVAHNYIKVMFGEDHSFRAGTIGTVADKTAYGYVKAYERDTGQ
QLRGAEIDRLAQGDTGVKRTTGQHPAGILIVPADMDIYDFTPIQYPADDQNAAWMTTHFD
FHSIHDNILKMDVLGHDDPTMIRMLQDLSGVEPKSIPTDDPGVMALFSGTESLGVTPEQI
NSKMGTLGIPEFGTRFVRGMLEETKPTTFSELLQISGLSHGTDVWLGNAEELIKQGIVTL
KEVIGCRDNIMMDLIHWGMDDSMAFNIMEHVRKGRGIPDDWQKAMRENENVPDWYIDSCL
KIKYMFPKAHATAYILMALRIAWFKVHYPLVYYTAYFSVRAEDFDLAAMSHGKEAVKAAM
KEITDKGMDASAKEKQLLTVLEIANECLERGFKIKMIDVTKSDSHDFLIQDDHTILAPFR
AVPGLGDNVAKQIVAAREEKPFLSKEDLANRGKVSKTLIDYMTTNHVLDDLPDENQLSLF
DGLF
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
ttggctttatcccaacatgagatgtttgaaaaattaatggatcagctcgatttaccagca
gatgtgcgacatgatccatcactggcagatgggtcggttcaagcagtgacaatccatgag
cagtcacaacgctatgactttaccttggcgtttccgacgattttgccattccagattttt
aataccatcgccacgcaactgccaattgctttcaaacaaattgcggcgacacggttgacc
attgcggttgctcagccgacgattactgacgaactattggcgcaatattggccatatgtg
gtgcaaaattcagaaatcggtactgggatcgttcgtgaactgtgcgaaaaacaggtaccg
acgttggtgaataatcgcgcggtgataacagctgaaaatgaacagattcggcaatacctg
attaatcaaggattaggtaagcttgaagcaacctatcagcaagtcggcttttccggatta
cggatgcaggcccaagtagacgaagagcaagcggcgcagtctttggcggcatttgaagcg
caaaaagcagcgcaaacggcgaagatggcccaggcagctgctgaagtggtgaagcggcaa
gcggctaaacaaaaacaggagcccacgaatggtccggttcaaatggggcggcagttaaaa
atgagtgatccgccgcagcaaatggtcacgattacccaagaagaacgttcagtaaccgtt
gaaggctatgtgtttgatgtcgaagtacgggaattacgctcgaaacggcaattactgatt
ttcaaaatcaccgattacagctccagttttattgccaagaaattcagcaatggtgctgac
gatgaggcgatgtttgcgcgcattaaaaaaggccagtggttgcgggtacgcggcagtgtg
caagaggacaactattcgcgcgaactcacgatcaatgcacaagatattcaaaccgtttcc
catcctgatccaaccgatgacgttgaaggcgaaaaacgggttgagctgcatctgcataca
aacatgagccagatggatgcgaccaactcaattaccgatttcgtgaaccgcgctaaagca
tggggacacaaggcgatcgctgtaaccgatcatgctgggctgcaagcttatccagaagcc
cacaccgcagctgctaaagccggtttgaaaatgttatacggcgttgaaatcaacctagtc
gatgatggaacgccggttgcttatcgagctgacgagccgcgcgtgttggcagacgcggaa
tatgttgttttcgacgtggaaacaaccggtctttcagcagtttacgataaggtcatcgag
ttagctgccgttaaaatgaaagacggtcaggtgattgatcagtttgaagaaatgatcgat
cccggttttccgctgtcagaattaaccattaacctcacgcatatcaccgacgacatggtt
cacggttccaagtctgaagaagaagtgtttcggcttttccagcagttctgtgacggtgcg
atcatggtcggacataatgtcacgtttgacgtgggcttcttggataatggttatgagcgg
cacgggctggctgatattgacaatccggtcattgatacgcttgagttatcgcgcatgctc
catcccgaacgcaaaaatcacaaactggataccttggctaagcaatacaaagttagccta
gaacaccatcaccgcgccaacgcggatgctgaggcgaccggttatttgctatacgccttg
gaaaaagaagctgccaagatgtacaacatgaccaaactcaaccaattaaatgatcgcgtg
ggtgccggtgaggcttataaggctgcccgcccgagtcatgcgattgtatttgccaaaacc
caagccggcttgaagaatcttttcaagttggtgtccttgtcaaatgtcaaatacttctat
cgggtgccgcgagtaccacgcagtcagttgcagaagttgcgtgaaggtttgctcgtcggt
tcggcttgctcaagcggcgaagttttcaccgccatgatgcaaaaaggggaggctgaagca
cgtgccaaggcagcattttatgattatctcgaaattcaaccgccagccgtttaccagcca
ttactagaagccgatcttattaaaggcgagtcgcatttaaaagatattttgcaaaaaatt
gtcaaaatcggcgacgaactagagaagccggttgtcgttaccggtgacgttcattatctg
gatcaacacgatgcgatttatcgaaagattctcattcacagtcaaggtggggccaatccg
cttaatcgtcatagtctgcctgatgttcattttcgctcaacccgggaaatgctggatgat
tttagttggttaggcgaagaaaaggcgcagcaactggtcgtaaccaactcgaatttaatt
gccgactggattgatgataatatcacaccggttaaagataagctttacacgccggaagtg
cctggggtggaagaaaagctcaaacatgatgtgatggcgactgcctatgagctttacggc
aatccgttgccagaaatcgtcgcgcaacgcttggataaagaacttaaaagtattatcggg
aatggattctcagtcatttataacattgcgcaacggctggtattaaagtcgaacaaagac
gggtacttggttggttcccgagggtcggttggttcgagtttagctgcgacgatggccgag
attaccgaggtgaacccattgccgccacattatcggtgtccgaaatgccagtacagtgaa
ttctttacgcatggcgaagtcggatcgggctttgaccttccggataagacctgcccgaaa
tgtggaaccgagctgcataaagacggccatgacattccatttgagacgttcttaggcttc
cacggcgataaggtgccggatattgacttgaacttttccggtgactatcagcctgtggcg
cataactatatcaaagtgatgttcggcgaagatcatagtttccgtgccgggacaattgga
acggtggccgataaaaccgcttatggttatgtgaaagcttacgagcgcgacaccggtcaa
cagttgcgcggtgctgaaattgatcgactggcacaaggcgatactggcgttaaacgtacc
actggtcagcatccggcggggatcttgattgtcccggcagatatggatatttatgatttc
acaccgattcaatacccggcggatgaccaaaatgctgcttggatgaccacccactttgat
ttccattcaattcacgataatattttgaaaatggatgtactgggccatgatgacccaacg
atgattcgtatgttgcaggacttgtcaggggttgagccgaaatcaattccaactgacgat
cccggagtcatggcgcttttttccggaaccgagagtttaggtgtgacgcctgaacaaatc
aattccaaaatgggcacgcttggcattcccgaatttgggacccggtttgtccgcggcatg
cttgaagaaaccaagccaacgaccttcagcgaattattacagatttccggattgtctcac
gggacggatgtgtggttaggcaatgcggaagagttaatcaagcaaggcattgtcaccttg
aaggaagtcatcggttgtcgtgataacatcatgatggacttgattcactgggggatggac
gattccatggcgtttaatatcatggaacacgttcgtaaaggccggggtatcccggatgac
tggcaaaaagcgatgcgcgaaaatgaaaatgtgccggattggtatattgattcctgcctg
aagattaaatacatgttccctaaagcccacgcaacggcgtatattctgatggcattgcgg
atcgcctggttcaaggtccattatccgctggtgtattacactgcttacttttccgtgcgg
gccgaagattttgatttagctgccatgagtcacggcaaagaagccgttaaagccgcaatg
aaggagattacggacaagggcatggatgcttccgctaaagaaaagcaattgttaactgtt
ttggaaattgctaacgaatgcctggagcgtggctttaagatcaaaatgattgatgtcacc
aagtccgattcccatgatttcctgattcaggatgatcacaccattctagcgccattccgt
gcggttcccggattgggcgataacgttgccaagcagattgtcgctgcccgtgaagaaaag
ccattcttatcaaaagaagacctagcaaatcgcggaaaggtttctaaaactttgattgat
tacatgacgaccaaccatgttttagatgatcttccagatgaaaatcaattatcacttttt
gatggcttattttaa
DBGET
integrated database retrieval system
