Labeo rohita (rohu): 127152076
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Entry
127152076 CDS
T09007
Symbol
notch1a
Name
(RefSeq) neurogenic locus notch homolog protein 1
KO
K02599
Notch 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
127152076 (notch1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
EGF_2
Ank_2
Ank
Notch
NOD
NODP
Ank_3
Ank_5
Ank_4
EGF_3
cEGF
JAG1-like_EGF2
Gram_pos_anchor
DL-JAG_EGF-like
Motif
Other DBs
NCBI-GeneID:
127152076
NCBI-ProteinID:
XP_050948440
LinkDB
All DBs
Position
21:27778957..27817489
Genome browser
AA seq
2436 aa
AA seq
DB search
MNRFLVKLTLLTAASLATVAQGQRCSEYCQNGGICELKASGEASCRCPADFVGPQCQFPN
PCSHSPCRNGGVCRARTQGNDVEPTCDCVLGYSGPLCLTPVNHACMGSPCRNGGTCSLLT
LETFTCRCPPGWSGKTCQQADPCASNPCANGGQCSAFESHYICTCPPNFHGQTCRQDVNE
CALSPSPCRNGGNCINEVGSYLCRCPPEYAGTHCERLYHPCHPSPCRNGGTCLQTSDTTY
ACTCLPGFTGQTCEHNVDDCTQHACENGGRCIDGVNTYNCHCDKHWTGQYCTEDVDECEL
SPNACQNGGTCHNTIGGFHCVCVNGWTGDDCSENIDDCASAACSQGATCHDRVASFICEC
PHGRTGLLCHLDDACISNPCQKGSNCDTNPVNGKAICTCPPGYTGSACNQDIDECSLGAN
PCEHGGRCLNTKGSFQCKCLQGYEGPRCEMDVNECKSNPCQNDATCLDQIGGFHCICMPG
YEGVFCQINADDCASQPCLNNGKCIDKINSFHCECPKGFSGNLCQVDVDECASTPCKNGA
KCTDGPNKYTCECTPGFAGAHCELDINECASSPCHYGVCRDGVAAFTCDCRPGYTGRLCE
TNINECLSQPCRNGGTCQDRENAYTCTCPKGTTGMNCEINIDDCKSKPCDYGRCIDKING
YECVCEPGYTGSMCNINIDDCALNPCHNGGTCIDGVNTFTCLCPEGFRDATCLSKHNECA
SNPCIHGNCLDQINSYRCMCEAGWTGRNCDININECLSNPCVNGGTCKDMTSGYVCTCRA
GFSGPNCQTNINECASNPCLNQGTCIDDVAGFKCNCMLPYTGEVCENVLAPCAPRPCKNG
GVCRESEDFQSFSCACPTGWQGQTCEVDINECVRNPCTNGGVCENLRGGYKCRCNPGFTG
DLCQNDIDDCAPNPCSNGGVCQDRVNGFVCVCLAGFRGERCTEDIDECVSAPCRNGGNCT
DCVNSYTCSCPVGFSGINCEINTPDCTESSCFNGGTCVDGINTFSCVCLPGFTGNYCQHD
VNECDSRPCQNGGTCQDGYGTYKCTCPHGYTGLNCQGLVRWCDSSPCKNGGSCWQEGASF
NCQCASGWTGIYCDVPSVSCEVAAKQQGMSVAVLCRNAGQCVDVGNTHLCRCQAGYTGSY
CQEQVDECMPNPCQNGATCTDYLGGYSCECVPGYHGVNCSKEINECLSQPCQNGGTCIDL
INTYKCSCPRGTQGVHCEIDVDDCSPAVDQLTGEPRCFNGGRCVDRVGGYGCVCPAGFVG
ERCEGDVNECLSDPCDPNGSYNCVQLINDFRCECRTGYTGKRCETVFNGCKDTPCKNGGT
CAVASNTKHGYICKCQPGYSGSSCEYDAQSCGSLRCRNGATCVSGHLSPRCLCPPGFSGH
ECQTRMDSPCLNNPCYNGGTCQPINDAPFFRCSCPANFNGLLCHILDYSFKGGQGRDIAP
PPEVDIRCEIAQCEGRGGNAICDTQCNNHECGWDGGDCSLNFDDPWQNCSAALQCWRYFN
DGKCDEQCANAGCLYDGFDCQRLEGQCNPLYDQYCRDHYADGHCDQGCNNAECEWDGLDC
ADDVPQKLAVGSLVLVVHIPPEELRNRSSSFLRELSGLLHTNVVFRRDSNGEPLVFPYYG
NEHELSKHKRSDWTDPAQLLQRARRSLTAFMKPRLRRELDQMEIKGSIVYLEIDNRQCFQ
QSDECFQSATDVAAFLGALASSGNLNVPYIIEAVTSEGPPSKTGEMYPMFLVLLALAVLA
LVAVGVVVSRKRKREHGQLWFPEGFKVTEPKKKRREPVGEDSVRLKPLKNSDSSLMDEQL
SEWAEDDTAKRFRFEEQSILDMSGQLDHRQWTQQHLDAADLRLNSMAPTPPQGEIENDCM
DVNVRGPDGFTPLMIASCSGGGLENENGEGEDDPSADVITDFIYHGANLHNQTDRTGETA
LHLAARYARSDAAKRLLESCADANVQDNMGRTPLHAAVAADAQGVFQILIRNRATDLDAR
MHDGTTPLILATRLAVEGMVEELINCHADPNAIDDSGKSALHWAAAVNNVDAAVVLLKNG
ANKDLQNNKEETPLFLAAREGSYETAKVLLDHLANREIADHLDQLPRDIAQERMHHDIVR
LLEEYNLVQSPALPLSPPLCSPNTYLGIKPSPGGANNNTAKKARKPGGKGVGGKDGGKDM
RMKKKKSGEGKNGGIMEVAVLSPVDSLESPHGYLSDVSSPPTMTSPFQQSPPITLNQLQG
LADSHMGGALQGLGKPFDSAPRLSHLPVGNNGGGAQTAACDWLQRVQQQQQQAGFTTLIP
TMLPPTSMPQVMGYPTMQSSHLSAPSHMIPNHMAPMQHQNTALSHHFLGDLTGLDLQSGS
GHAPIQTILSQESQRMAPPISSTQFLTPPSQHSFSNPMDNTPSHQPQVPDHPFLTPSPGS
PDQWSSSSPHSVSDWSEGISSPPTSMQMNHIPEAFK
NT seq
7311 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtttcttggtgaaattaacgctactgacggcagcatcgcttgcgacggtggca
caagggcaaagatgctcagaatactgtcagaatggaggaatatgcgagctcaaggcgagt
ggagaagcatcatgcaggtgtcctgcagacttcgtcggcccccagtgtcagttcccgaac
ccgtgcagccattcgccgtgtcgtaacggaggcgtgtgtcgcgcacggacgcaaggcaat
gacgtggagccgacctgcgactgcgtgttgggatacagcggcccgctctgtctgacgccc
gtcaatcacgcctgcatgggctccccgtgccgaaacggtggaacgtgctctctgctcacg
ctagagacctttacctgccgctgcccacctggatggtcaggtaaaacatgccagcaggcc
gacccatgtgcatcgaacccctgtgccaacggaggacagtgttcagcgttcgagtcgcac
tacatctgcacctgccctcctaacttccacggacagacgtgtcggcaagacgtgaatgag
tgcgccctctcgccctccccctgccggaacggaggcaactgtattaatgaggtgggctcg
tacctgtgccgctgcccacctgagtacgccgggacgcactgtgagcgcctgtaccacccg
tgccacccttcgccttgcaggaacggagggacctgtttacagaccagtgacaccacctat
gcctgcacgtgtctgccagggttcacgggtcaaacgtgtgagcataatgttgacgactgc
acccagcatgcctgtgagaatggaggcaggtgcatcgatggcgtcaacacctacaactgc
cattgcgacaaacactggaccggtcagtactgtacggaggacgtggacgagtgcgaactg
tcacctaacgcctgtcagaacggagggacgtgtcacaacaccatcggtgggtttcactgc
gtgtgcgtgaacggctggacgggcgacgactgcagcgagaacatcgacgactgcgccagt
gccgcctgttcacaaggtgccacctgccacgacagagtggcatctttcatctgcgagtgt
ccacacggacgcacaggccttctgtgtcatcttgacgacgcctgcatcagtaatccatgt
cagaagggctcaaactgcgacacgaacccagtaaacggaaaagccatctgcacctgtcca
cccggatacacgggatcagcctgcaaccaagacatcgacgagtgctcgctcggcgcaaac
ccatgcgagcatggcggacggtgtctcaacactaaaggctccttccagtgcaagtgtctc
caaggttacgaagggccgcgctgcgaaatggacgtcaacgagtgcaagtcgaacccgtgc
cagaacgacgccacctgcctcgaccagatcggtggattccactgcatctgcatgccaggt
tacgagggtgtgttttgtcaaatcaacgccgacgactgcgcatcacagccttgccttaac
aacgggaaatgcatcgacaagatcaactcattccactgcgaatgccctaaagggttctct
gggaatctgtgtcaggttgatgtggacgagtgcgccagcacaccctgtaaaaatggcgct
aaatgcacagacggacccaacaaatacacttgcgagtgcactccaggttttgctggcgct
cactgtgagctggatatcaacgagtgcgcatcaagcccttgtcactacggcgtgtgtcgg
gacggcgtggccgctttcacctgcgattgccgtccaggatacaccggccgcctgtgtgag
accaacataaacgagtgcctgagccaaccctgccgaaacggaggcacctgccaggacaga
gagaatgcgtacacctgtacctgtcctaaaggaaccacaggaatgaattgcgagataaac
attgacgactgcaaaagtaaaccatgtgactacggaagatgcatcgacaagatcaatggc
tacgagtgtgtgtgtgaacccggatacacaggttccatgtgtaacatcaacattgacgac
tgcgcgttaaacccgtgtcacaacggcggcacctgcatcgacggtgtcaacaccttcacc
tgtctctgtccggagggtttccgtgacgccacctgcctctccaaacacaacgagtgcgcc
agcaacccttgtatccacgggaactgcctggaccagatcaacagctacagatgcatgtgc
gaggccggctggacgggacgcaactgtgacatcaacatcaacgagtgtctgtccaacccg
tgtgtgaacggaggcacctgtaaggacatgaccagcggctacgtgtgcacctgcagagcc
ggcttcagcggtccaaactgccagactaacattaacgagtgtgcgtccaacccctgccta
aaccagggcacctgcattgacgatgtggccggattcaagtgcaactgcatgctgccctac
acaggtgaagtctgtgagaacgttctggctccctgcgctccacgtccttgtaaaaacgga
ggcgtttgtcgtgaatctgaagatttccagagcttctcttgcgcttgtcctactggatgg
caaggtcagacgtgtgaggtggacatcaacgagtgtgtgaggaatccttgcactaatgga
ggagtgtgtgagaacctgcgtggaggatataagtgccgctgcaacccgggattcaccgga
gatctgtgccagaacgacatcgacgactgcgcaccaaatccgtgcagtaatggtggtgtg
tgtcaggaccgtgtgaacggctttgtgtgtgtgtgtttggctggcttccgtggtgagcgc
tgcacagaggacatagacgagtgtgtgagcgccccctgccgaaacggagggaactgcacc
gactgcgtcaacagctacacctgcagctgccctgtaggattcagcggcatcaactgtgag
atcaacacacctgactgcactgagagctcgtgttttaacggcggaacatgcgtggatggc
ataaacacgttctcatgcgtgtgtttgccgggatttaccgggaattactgccagcatgat
gttaacgagtgcgactcacggccgtgtcaaaacggaggcacctgtcaggatggatacggc
acctacaaatgcacctgtccacacggatacaccggactcaactgccagggtctggtgcgc
tggtgtgattcttccccttgtaagaacggcggctcatgttggcaggagggggcgtctttt
aactgtcagtgcgccagcggctggacgggcatctactgcgacgtccccagtgtcagctgt
gaggtcgccgccaagcagcaaggaatgtcagtggccgttctgtgtcgtaacgcgggtcag
tgtgtagacgtgggtaacacacacctgtgcagatgtcaggccggatacacgggcagctac
tgtcaggagcaggtggacgagtgtatgccgaacccctgccagaacggagccacctgcacc
gattacctgggaggatacagctgtgagtgcgttcctggatatcacggagtcaactgcagc
aaggagatcaacgagtgtctgtctcaaccctgccagaacggaggaacctgcatcgacctc
atcaacacgtacaaatgctcctgtccacgaggaacgcaaggcgttcactgtgagattgac
gtcgatgactgttcgccggctgtggatcagttaacgggtgagccgcgctgttttaacggc
ggccgctgcgtggaccgtgtgggaggttatgggtgcgtgtgtccggccggttttgtgggc
gagcgctgcgagggcgacgtcaacgagtgcctgtctgacccctgtgacccgaatggatcc
tacaattgcgtacagctcatcaacgacttccgctgcgagtgccgtacaggatacaccggc
aagcgctgtgaaactgtgttcaacggttgcaaagacacaccatgcaaaaatggaggaacg
tgtgctgtagcgagcaacaccaaacatggatacatctgcaagtgtcagcctggttactct
ggctcctcctgcgaatatgacgcccagtcctgcggctccttgcgctgtcgtaacggcgcg
acctgcgtctctggacacctgagtccccgctgtctctgcccgccgggcttcagcggacac
gagtgccaaacccgcatggactcgccctgcctcaacaacccctgctacaacggcggcacc
tgccaacccatcaacgacgcaccattcttccgctgctcctgccccgccaacttcaacgga
ctcctgtgccacatccttgactactccttcaaaggaggacagggccgagacatcgccccg
ccgcctgaggtggacattcgatgtgaaatcgctcagtgcgaaggcaggggtggaaacgcc
atctgcgatacccagtgtaacaatcacgagtgcggatgggacggtggcgactgctctctg
aattttgacgacccatggcagaactgtagcgcagccctgcagtgctggaggtacttcaac
gacgggaaatgcgacgagcagtgcgccaacgctggatgcctgtatgatggattcgactgc
caaagactggaggggcagtgcaatccgctgtacgatcagtactgtagggatcactacgcg
gacggccactgcgatcagggctgtaataacgccgagtgcgaatgggacggtctggactgc
gccgacgatgttcctcagaagctggccgtgggaagtctggttctagtggtccacatccca
ccagaagagcttcgcaaccgctcctcgtctttcctccgcgagctgagcggactgctgcac
accaacgtggtgttccggcgcgactctaacggagagccgctcgtcttcccgtactacggc
aacgagcacgagctgagcaaacacaagcgctccgattggacggatccggcccagctgttg
cagcgcgccaggaggagcctcactgccttcatgaagccccgcctacgacgggaactcgat
cagatggagatcaaaggatccatcgtctatctagagattgacaaccgtcagtgtttccag
cagtctgacgagtgtttccagagcgcgacggatgtggcggctttcctcggagcgctggcc
tctagcgggaatctcaatgttccttacatcatcgaggctgtcacaagtgagggcccccct
tcaaagacaggagagatgtaccccatgttcctggtgctgctggcgctggccgttctggcg
ctggtggctgtgggcgtcgtggtctccaggaagaggaagagggaacatgggcagctctgg
ttcccagagggatttaaagtcacagagcccaaaaagaaacgaagggaaccggtcggagag
gattctgtcagactcaagcctctgaaaaactcagacagctctctgatggatgaacaactg
agcgaatgggcagaagatgacacggctaaacgattccggtttgaggagcagtctattctg
gacatgagcggtcagctggatcaccggcagtggacgcagcagcacctggacgccgccgac
ctgcgtctgaactcgatggctccgactccaccgcagggcgagatcgagaacgactgcatg
gacgtcaatgtccgcggacctgatggttttactccactgatgatcgcgtcgtgcagcggc
ggcggtctcgaaaacgaaaacggcgagggtgaagacgatccctctgctgacgtcatcacc
gacttcatctaccacggcgccaacctgcacaatcagaccgaccggaccggcgagaccgcg
ctacacctggctgcccgttacgcccgctcggacgcagccaaacgtctgctggagtcgtgc
gctgatgctaatgttcaggataacatgggccgaacgccgctccacgccgctgttgctgct
gatgcacagggagttttccagattctcattcggaaccgagcgacggatctggacgcccgc
atgcatgacggaacgactccgctgatcctggccacccgattggctgtcgaaggaatggtg
gaggagctcattaactgccatgcagatcctaacgctattgatgattctggtaaatcggct
cttcactgggcggctgcagttaataatgtggacgctgctgtcgttcttctaaagaatgga
gcgaataaagacctacagaataacaaggaggagacgccactgttcctggccgctcgtgag
ggaagttacgaaaccgccaaagtcctgctcgaccacttggccaaccgcgaaatcgcggat
cacctagaccagcttccgcgtgacattgcgcaagaacgcatgcaccacgacatcgtccgt
ctgttagaagaatacaacctggtccaaagtcccgctctgcccttatcgccacctctctgc
tcgccaaacacctacctgggcatcaaacccagcccgggcggcgccaacaacaacacggcc
aagaaagcccgaaaaccaggcggtaaaggcgtaggagggaaggacggcggaaaagacatg
agaatgaaaaagaaaaagagcggagaagggaaaaacggaggcattatggaagtggccgtc
ctctcgcctgtcgattcgctagagtcgccgcacggctacctgtcggacgtctcgtccccg
cccacaatgacgtcaccgtttcaacaatccccgcccatcactttgaatcagctccaagga
ttggctgactcccacatgggcggagctcttcagggcttagggaagccgtttgactccgcc
cctcgcttatcccacctcccggtgggtaacaatggaggcggagctcaaacggcggcatgt
gattggctgcaaagggtgcagcagcaacaacagcaggcaggcttcacaaccctcataccc
acaatgctccctcccaccagtatgccacaagtcatgggctatcccacaatgcaaagcagc
catctcagcgcgccgtcgcacatgattcccaaccatatggcgcccatgcagcaccaaaac
accgccctctcgcatcacttcctaggcgacctaaccgggctggatcttcagtcgggctca
ggacacgcccccatccagaccatcctgtcgcaggagagccagcgcatggctccgcccatt
tctagcacacagtttctgactccgccctctcagcatagcttttccaaccctatggacaac
acgcccagtcaccaaccgcaggttcccgaccacccgtttctcacgccctccccaggatct
cccgaccaatggtcgagctcgtctccacattccgtgtctgattggtcagagggcatctca
agcccgcccaccagtatgcagatgaaccatatccctgaagccttcaagtag
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