Labeo rohita (rohu): 127164912
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Entry
127164912 CDS
T09007
Symbol
grin1b
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1b isoform X1
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
lroh
Labeo rohita (rohu)
Pathway
lroh04020
Calcium signaling pathway
lroh04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
127164912 (grin1b)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
127164912 (grin1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lroh04040
]
127164912 (grin1b)
Ion channels [BR:
lroh04040
]
Ligand-gated channels
Glutamate (ionotropic)
127164912 (grin1b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
SIP
DUF6724
DUF3663
Motif
Other DBs
NCBI-GeneID:
127164912
NCBI-ProteinID:
XP_050965026
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All DBs
Position
5:28823793..28855373
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AA seq
964 aa
AA seq
DB search
MRLVLFAFLISCSCARGGCEPKTVNIGAVLSQKRYEQVFKDAVTQANNIYGKDKFKMNAI
SVTHKPNAIQMALSVCEDLISNQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAQVWFDMMREFQWNHIILIVSDDHEGRAAQKRLETL
LEERETKSKNRNYENLDQLSFDNKRGPKAEKVLLFSQDTNLTALLQEAKELEARVIILSA
SEDEAAAIYKAARQLNMTGSGYVWLVGEREMSGKALSEAPDGLLGLQLINGKNESAHIYD
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGLTGRVEFNDD
GDRRFAHYSILNYQKTRLVQVGVYNGSQVVMNTQRKIIWPGGETEKPKGYQMSTRLKIVT
IHQEPFVYVKPTLRDGTCKEEYTVNGVLIKKVICTGPNETIPGRHYVLYAVCWTTVVLSP
DLTGLCNSLGRPIVPQCCYGFCIDLLIKLAKTMNFTYEVHLVADGKFGTQERVNNSNKKE
WNGMMGELLSGLADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQP
FQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNS
GIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSD
KFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLE
FEASQKCDLVTTGELFFRSGFGIGMRKDSPWKQNVSLAILSFHENGFMEDLDKTWVRYQE
CDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNV
WRKNLQDRKSGRAEPDPKKKASFRSISTNLASNIKRRRSSKDTPYPTDITGQLNLSDPSV
STVV
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttggttctgttcgcctttctcatctcgtgctcctgtgcgagaggcggatgcgaa
cccaagactgtgaacatcggggctgtcctgagccagaagagatacgaacaagtgttcaaa
gacgctgtcacccaagctaacaacatatacggcaaagataagttcaagatgaacgcgatt
tcagtcacccataagccaaacgccatccagatggcactctccgtatgtgaggatctcatc
tctaaccaggtgtatgcgatcttggtcagccacccaccccagtccaacgaccatctgact
cccaccccggtgtcctacacagctggcttttaccgtatccctgtagtgggcctcaccacc
cgcatgtccatctactcggataagagcatccacctctccttcctgcgcacggtgccaccc
tattcccaccaagcccaagtgtggtttgacatgatgcgtgagttccagtggaatcacatc
atcctgatcgtgagcgatgaccacgagggcagagcggcacagaaaagactggaaaccctg
ctggaagaaagggagacgaagagtaaaaacaggaactatgaaaacctcgaccaactgtcc
tttgacaacaagcgaggacccaaggcagagaaagtgctcctgttcagccaagacacaaat
ctgacggctctgctccaggaagccaaagagctagaggcccgagttatcattctgtctgca
agtgaagacgaagccgcggccatttacaaagcggcccgccagctcaatatgacaggctct
ggttatgtgtggctggttggcgaaagggagatgtctggtaaagcactgagtgaagcccca
gatggcttgctcggccttcagcttatcaatggcaagaacgagtcggcgcacatctacgat
gccgtggctgtggtggcccagtccattcaggagctctttgagaaggagaatatcacagag
cctcctcgaggctgtgttggcaatacaaacatctggaagactggcccactcttcaaacga
gtgctgatgtcatccaagtatccagatggcctgacaggccgcgtggagtttaatgatgac
ggagacaggaggttcgcccactacagcattctgaactaccagaaaacccggctggtgcaa
gtgggcgtctacaatggctcgcaagttgtaatgaacactcagaggaagataatttggcca
ggaggagaaactgaaaagccaaaaggataccagatgtcaaccagattaaagattgtcacc
attcatcaagagccctttgtctatgtgaaaccaacactacgagatggaacatgtaaggaa
gaatacactgtaaatggagtcctgatcaaaaaagtgatctgcactggccctaatgagacc
attccaggtaggcattatgtattatatgcagtttgttggactacagttgtgctctctcca
gatctgactggcttgtgtaactctctaggtcgccccatagtgcctcagtgctgctatggg
ttctgcattgaccttttgatcaaacttgcaaagacaatgaacttcacctatgaagtgcat
ctagtggctgatggcaaatttggcactcaggagcgtgtaaataacagcaacaagaaggag
tggaatggcatgatgggagagctcctgagtggcttggcagatatgatcgtggctccactt
acaatcaacaatgaacgagcccagtacatagagttctcgaaaccatttaagtaccaaggg
ctcacaatacttgtcaaaaaggaaataccacgcagtacactggactcgttcatgcagcct
tttcagagcactctgtggttactggtgggtctatcggtccatgttgtggcggtgatgctc
tacctattagaccgtttcagcccgtttggaaggtttaaagtaaatagtgaagaggaagaa
gaagatgccctcaccttatcctctgctatgtggttctcctggggtgtacttctgaactcc
ggcattggagaaggtgcccctcggagcttttcagcaaggattttaggtatggtgtgggct
ggttttgctatgattatagttgcatcctatactgccaatttggcagccttcctagtgctg
gatcggcctgaggagcgcattaccggcatcaacgaccctaggctgcgaaacccatcagac
aagttcatctacgccacagtgaagcagagctctgtggacatttacttccggcgccaagtt
gagctaagcaccatgtaccgccacatggaaaagcacaactacgagagcgccgctgaagcc
atccaggccgtgcgagacaacaaactccacgcatttatatgggattcagcagtgttggag
tttgaggcctcgcagaaatgtgacctggtcaccacaggagagctgttcttccgctctgga
ttcggtatcggcatgcgtaaagacagcccatggaagcaaaatgtctcactggccatcctc
agtttccatgagaatggcttcatggaggacttggataaaacctgggtccgttatcaggag
tgcgactccagaagcaatgcaccagccacgctcactttcgagaacatggcaggcgtgttt
atgttggtggctggtggcatcgttgccgggatcttcctcatctttattgagattgcgtat
aaacgacataaggatgcgcgcaggaagcagatgcagctggcttttgcagcagttaacgta
tggaggaagaacttacaggataggaaaagtggtagagcagagcccgaccccaaaaagaaa
gcctcttttaggtccatcagtaccaacctggcctccaacatcaagagacgtaggtcgtcc
aaagacacgccatatcctacggacattaccggccagctcaacctgtcagacccctctgtg
agcacagtggtgtga
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