Lynx rufus (bobcat): 124519461
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Entry
124519461 CDS
T08475
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lruf
Lynx rufus (bobcat)
Pathway
lruf03020
RNA polymerase
lruf03420
Nucleotide excision repair
lruf05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
lruf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124519461
09124 Replication and repair
03420 Nucleotide excision repair
124519461
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
124519461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lruf03021
]
124519461
03400 DNA repair and recombination proteins [BR:
lruf03400
]
124519461
Enzymes [BR:
lruf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124519461
Transcription machinery [BR:
lruf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124519461
DNA repair and recombination proteins [BR:
lruf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124519461
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
124519461
NCBI-ProteinID:
XP_046945616
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLAKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RFARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtccgtgaccgaggggggt
atcaaataccccgagacgacggagggaggccgccccaagcttggggggctgatggatcca
aggcagggggtgatcgagcggactggccgctgccagacctgtgcaggaaacatgacagag
tgccctggccactttggccacattgagctggccaaacctgtgtttcacgtgggcttcctg
gtgaagacgatgaaagttctgcgctgtgtctgcttcttctgctccaaacttctcgtggac
tctaacaacccgaagatcaaggacattctggccaagtccaaggggcaacccaagaagcgg
ctcacacacgtgtacgacctgtgcaagggcaagaacatctgcgagggcggagaggagatg
gacaataagttcggcgtggagcagccggagggcgacgaggacctggccaaggagaagggc
cacggtggctgcgggcggtaccagcccaggatccggcgctccggcctcgagctgtacgcc
gagtggaagcacgtcaacgaggactcgcaggagaagaagatcctactgagccccgagcgc
gtgcacgagatcttcaagcgcatctccgacgaggagtgtttcgtgctgggcatggagccc
cgcttcgcacggcccgagtggatgatcgttacggtgctgcccgtgcccccgctgtccgtg
cggcccgccgtcgtgatgcagggctccgcccgcaaccaggacgacctgacgcacaagctg
gccgacatcgtgaagatcaacaaccagctgcggcggaacgagcagaacggcgcggcggca
catgtcatcgccgaggacgtgaagctcctccagttccacgtggccaccatggtggacaac
gagctgcccggcctgccccgcgccatgcagaagtccggacgccccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgggtccgggggaacctgatgggcaagcgagtggac
ttctcggcccgcaccgtcatcacccccgaccccaacctctccatcgaccaggtcggcgtg
ccccgctccatcgccgccaacatgacttttgcggagatcgtcacgcccttcaacatcgac
agacttcaggagctggtgcgcagggggaacagccagtacccgggcgccaagtacatcatc
cgggacaacggcgatcgtatcgacctgcgtttccaccccaagcccagtgaccttcacctg
cagaccggctacaaggtggagcggcacatgtgcgacggagacattgttatcttcaaccgt
cagccgactttgcacaaaatgtccatgatggggcatcgggtccgcatcctgccctggtcg
actttccgcttgaatctgagcgtgaccactccgtacaatgctgattttgacggggacgag
atgaacttgcacctgccacagtctctggagacccgggcggagatccaggagctcgccatg
gtgccacgcatgattgtcaccccccagagcaatcgccccgtcatgggcatcgtgcaggac
acgctcaccgcagtgcgcaaattcacaaagagagacgtcttcttggagcggggtgaggtg
atgaacctcctgatgttcctgtccacgtgggacgggaaggtcccgcagccagccattctg
aagccccgtcccctgtggacgggcaagcagatcttctccctcatcataccgggccacatc
aactgcatccgcacccacagcacccatcccgacgatgaggacagtggtccctacaagcac
atctctcccggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcttg
tgtaagaagtccctgggcacgtctgccggctcgctggtccacatctcgtacctggagatg
ggtcacgacatcactcgcctcttctactccaacattcagaccgtcattaacaactggctg
ctcatcgagggtcataccattggcatcggggactccattgcggactctaaaacttaccag
gacattcagaatacgatcaagaaggccaagcaggatgtgatagaggtcatcgagaaggct
cataacaatgagctggagcccaccccggggaatactctgcggcagacgtttgagaaccag
gtgaaccgcattctcaacgacgcccgagacaagaccggctcctccgcccagaagtccctg
tctgaatacaacaacttcaagtctatggtcgtgtccggggccaaaggttccaagatcaac
atctcccaggtcatcgccgtcgtcgggcagcagaacgtagagggcaagcggatcccgttc
ggcttcaagcaccggaccctgccccacttcatcaaggacgactacgggcccgagagccga
ggcttcgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccatgcc
atggggggtcgcgaggggctcatcgatactgctgtcaagacagctgagactgggtacatc
cagcggcggctcatcaagtccatggagtcggtgatggtgaagtacgacgccaccgtgcgc
aactccatcaaccaggtggtgcagctccgctacggcgaggacggcctggccggcgagagt
gtcgagttccagaacctggccaccctcaagccgtccaacaaggcttttgagaagaagttc
cgcttcgattataccaacgagagggccctgcggcggactctgcaggaggacctggtgaag
gacgtgctgagcaacgcgcacattcagaacgagctggagcgcgaatttgagcggatgcgt
gaggatcgggaggtgctcagggtcatcttcccaaccggcgacagcaaggtggtcctcccc
tgcaacctgctgcgcatgatctggaacgctcagaagatcttccacatcaaccctcgcctc
ccctccgacctgcaccccatcaaggtcgtagagggagtcaaggaattgagcaagaagctg
gtgatcgtgaatggggacgaccccctgagccggcaagcccaggagaacgccacgcttctc
ttcaatatccacctgcgctccacgctgtgctcccgccgcatggccgaggagttccggctc
agcggggaggccttcgactggctgctcggagagatcgagtccaagttcaaccaagccatc
gcccatcccggggagatggtgggggccctggctgcacagtcccttggagaacccgccacc
cagatgaccttgaacaccttccactacgccggtgtgtctgccaagaacgtgaccctgggc
gtgccgcgactcaaggagctgatcaacatttccaagaaaccaaagaccccgtccctcacg
gtcttcctgctgggccagtctgctcgggacgccgagagggccaaggacattctgtgccgc
ctggagcatacgacgttgaggaaggtgaccgccaacacagccatctactacgaccccaac
ccccagagcacggtggtggccgaggaccaggagtgggtgaacgtctactatgagatgcct
gactttgacgtggcccgaatctccccctggcttttgcgggtggagctggaccggaagcac
atgactgaccgcaagctgaccatggagcagatcgccgaaaagatcaatgctggtttcggc
gatgacttgaactgcatctttaacgacgacaacgcggagaagctggtgctgcggatccgc
atcatgaacagcgacgagaacaagatgcaggaggaagaagaggtggtggacaagatggac
gacgacgttttcctgcgctgcatcgagtccaacatgctgacggacatgaccctgcagggc
attgagcagatcagcaaggtgtacatgcacctgccgcagacggacaacaagaagaagatc
atcatcacggaggacggagaattcaaggccctgcaggagtggatcctggagaccgacggt
gtgagcctgatgcgggtgctgagtgagaaggacgtggaccctgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcatcgaagccgtgcggaaggccttggagcga
gagctctaccacgtcatctcctttgacggttcctacgtcaattaccgccacttggctctc
ctgtgtgataccatgacctgtcgtggccacttgatggccatcacgcgacacggggtgaac
cgccaggatacgggacctctcatgaaatgctcctttgaggaaacggtggatgtgctcatg
gaagcggccgcgcacggagagagtgaccccatgaagggggtgtctgagaacatcatgctg
ggccagctcgctccggccggcaccggctgcttcgacctcctgctcgacgcggagaagtgc
aagtacggcatggagatccccaccaacatccccggcctgggggccgccggacccactggc
atgttcttcggctcagcgcccagtcccatgggagggatttctccggccatgactccctgg
aaccagggggccactccggcctatggcgcctggtctcccagtgtcggaagtgggatgacc
ccaggggcggctggcttctcccctagtgctgcttcggatgccagcggcttcagtccaggc
tactcccctgcgtggtcccccacgccaggctcgccgggctccccgggcccctcgagcccc
tacatcccctcaccaggtggtgccatgtctcctagctactcacccacgtctcctgcctac
gagcctcgctcccccggcggctacacaccccagagcccctcctactcccctacctcgccc
tcctattccccgacctctccgtcctactctcccaccagtcctaactatagccccacgtca
cccagctactccccaacctcccccagctactctccaacgtctcccagctactccccgact
tctcccagctactccccgacctctcccagctactctccaacttccccgagctactctccc
acctctcccagctactccccgacctctcccagctactctcccacttctcccagctactcc
ccgacctctcccagctactccccgacctctcccagctactcccccacatcccccagctac
tcccccacatcccccagctattctcccacatcccccagctactccccaacatccccgagc
tactccccgaccagccctaactactctccgaccagtcccaattataccccaacgtccccc
agctatagcccgacatcacccagctactccccgacgagccccaactacacaccgacaagc
cctaactacagcccaacctctcccagctactctccgacttcacccagctactccccgacc
tcgcccagctactccccgtcaagcccacgatacacaccgcagtctccgacctacaccccg
agctcccccagctacagccccagctcccccagctacagccccacctcgccgaagtatacc
cccaccagtccctcttacagccccagttccccagagtacaccccgacctcccccaagtac
tcacccacctcccccaagtactcacccacctcccccaagtactcacccaccagccccacc
tactcacctaccaccccaaaatattccccaacgtctcctacttactcgccaacctctccg
gtctataccccaacctcccccaagtactcgcccaccagccccacctactcgcccacctcc
cccaagtactcgcccaccagccccacctactcgcccacctcccccaaaggctccacctac
tcgcccacctcccccggctactcgcccaccagccccacctacagcctcaccagcccggcc
atcagcccagacgacagtgatgaggagaactga
DBGET
integrated database retrieval system
