Leptidea sinapis (Wood White): 126964928
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Entry
126964928 CDS
T09272
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126964928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsin03019
]
126964928
Enzymes [BR:
lsin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
126964928
Messenger RNA biogenesis [BR:
lsin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
126964928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
MMR_HSR1
AAA_24
nSTAND3
AAA_10
RsgA_GTPase
AAA_25
AAA_16
Motif
Other DBs
NCBI-GeneID:
126964928
NCBI-ProteinID:
XP_050664215
EnsemblRapid:
ENSLSNG00005014442
LinkDB
All DBs
Position
6:complement(4563631..4825045)
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AA seq
420 aa
AA seq
DB search
MTEVQLQEFKLDPDSELRFEVESKNEKVVLEVKSGYAELFGTELVKGKPYEFHTGAKVAV
FTWHGCTVELRGRTEVSYVAKETPMVIYLNVHAALEQQRVAAEQENTRGPVTMIVGPGDV
GKSTLARILLNYAVRMARRPIFVDLDVGQGQISVPGTIGALLVERPASIEEGFSQQAPLV
YHFGHKGPGENLELYNTIVSRLAEVIAERCENNKKASTSGVIINTCGWIKGAGYKVLTHA
AQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSGGVVERSISQRAELRDARIREYF
YGKRTPYYPHSFDVKFTDLKIFKVGAPCLPDSCMPLGMRAEEALTKLVAVTPSPALHHRL
LCVSFAQPGDELALHCNLAGFVCVTAVDMERQTLTILSPQPRPLPNTILLLSELQYMDNH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagtccagttgcaggagtttaagttagatcccgattctgaactaagatttgaa
gtggaatcgaagaatgaaaaagttgttttagaggttaagagcggctatgctgagttattt
ggtacagaattggtcaaaggaaaaccatatgagttccatacgggtgcaaaagttgctgtc
tttacgtggcatggatgtactgttgagctaaggggccgtactgaagtcagttatgtagca
aaggagacaccaatggttatttatttaaatgttcatgctgcattagaacagcagagagtg
gctgcagaacaagagaacactaggggaccagtcacaatgatagtagggcctggagatgtg
ggcaaatctacattggcaaggattcttttaaactatgcagtaagaatggcaaggaggcct
atattcgttgatctggatgtggggcaaggacaaataagtgttccaggaactataggtgca
ctacttgtggagaggccagcttcaattgaggaagggttcagccaacaggccccgctggtg
taccactttggtcataagggacctggtgaaaatcttgaattatacaacactattgtgtct
cgcttagctgaagttatagcggaaagatgtgagaataataaaaaagcatcaacatctgga
gtaataatcaacacctgtggttggataaagggtgctggctataaagtactaacgcacgcc
gctcaagcttttgaagtggatgtgatcctggtgctggacaacgagcgactgtacaatgag
ctgaagagggacatgcccaagttcgtcaaagtagtctacttgccgaagagtggaggagtc
gtagagagatccatatcacagcgggctgagctgcgcgatgctcgaatacgcgagtacttc
tacggaaagagaaccccctactatccgcattcctttgatgttaaattcacagatttgaaa
atattcaaggtgggcgcgccgtgccttccggactcgtgtatgcccctggggatgcgtgcg
gaagaggcgctcaccaagctggtggcggtgactccatctccagcgctgcaccaccggctg
ctgtgtgtctccttcgcgcagcccggagacgagctggcgctgcactgcaacctggccggc
tttgtctgcgttaccgcggtggacatggagcggcagaccctcacgatcctgtctccacag
ccgcggccgctgcccaacactatcctgctgctttctgagctgcagtacatggacaaccac
tga
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