Leptidea sinapis (Wood White): 126972744
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Entry
126972744 CDS
T09272
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lsin
Leptidea sinapis (Wood White)
Pathway
lsin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126972744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsin03021
]
126972744
Enzymes [BR:
lsin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126972744
Transcription machinery [BR:
lsin03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
126972744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF6179
Motif
Other DBs
NCBI-GeneID:
126972744
NCBI-ProteinID:
XP_050675710
EnsemblRapid:
ENSLSNG00005004828
LinkDB
All DBs
Position
27:complement(4275923..4281563)
Genome browser
AA seq
1660 aa
AA seq
DB search
MDIDSTLSTTLKTMTSVDPDYIQFHLFSDEDIKQLSVVKITNSVAFDSLGNPTKGGLYDR
SMGPVRDRNDHCETCNNLLLHCPGHFGHIELPLIVVNPLFIKNIYTLFRVSCLKCFKIQM
DDGMKFILKLQLDLLDAGHVTAALDLENFIVDLKNTDNLSSPDKPHKIIRKYQKLLRKSD
GVTKTFQNKNIDKLRNNVINYYFKSINTAKLCIYCKSKLIKVTTTDNKIMYNTGADGGKK
GIKIIMPDELQSYCSAIAENDEDILVYCIPVLKYANIKPCTNLFFMQTLPVLPSNVRPCN
ILEGQLYEHPQTNVYSSILKCSYVARVILQILKEPDPEKAIDSLDQPLRQSYQSAYGKSP
AEKLHLIWQELQKQVNYVLSCEGVGVSSQGLKQILEKKTGLIRMHMMGKRVNFAARSVIT
PDPNVDIDEIGIPDAFATKLTYPVPVTEFNVDELRKMVINGPNIHPGAEKLEIKNGRTII
IPADSIEKRKSLAKRLLTPEEYKKPGLKIVHRHLINGDILILNRQPSLHKPSMMAHRARI
LKGEKTLRLHYANCKSYNADFDGDEMNAHFPQNEIARSEAYNIMSVRKQYLVPKDGTPLS
GLIQDHVISGVRMSMRGTFFNKSDYQQLVFQGLSSHKGEITLLPPTILKPVMLWSGKQVL
STIIINNIPKGKAYLSLVGKAKIGAKAWQKLPYRTWKAGGTPFSNPNDMSEAEVYIRKGE
LLCGVLDKTHYGATPYGLVHCMCELYGGDSSTALLSSFSKLFTFYLQWLGFSLGVKDILV
FEDADKNRDEIIELVRQIGKVAALKATDLPVDVEDSVLKDTIANRMTKDPKFRANLDRQY
KNVLDSYTNNINTVCLSQGLLEKFPSNNLQLMVQSGAKGSTVNTMQISCLLGQIELEGKR
PPLMISGRSLPSFPPYDVSPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTSRS
GYLQRCLIKHLEGLNVAYDHTVRDADGSVIQYAYGEDGLDVCKCQFFKKDQLPFLDANAD
AVISKSVIKKLKKEEISKELVKSQKSLKKWKKKYGSPFNKNKTSAFSKFSEIVRSDLTLR
EKPTNETRDPFYWKLEKKWRALDGDEMSQYKRKPCPDPVTSKMSPEYKFGVINEQLDDLI
QNYLKNRSANMFNEYTENEKFIEIMNAKFLASMAAPGEPVGLLAAQSVGEPSTQMTLNTF
HFAGRGDMNVTLGIPRLREILMTASAKLKTPNMDIPFLDTLSNLNRKAEKLRKIMNRVTV
NDVLEKINVECEIVTKPSRQLKTTMRFWFLPYSQYKPQYIVKPSQIIKHMQNKFFQEMFT
VVRKQAKTNCGVLWSTEKQKKKKAVNDDGDDDDGFEDGPIEGGGEDTIPADPDADSSDEE
GPNDDDDNTDVKLRKRRTEEQEYEDPESGEEEKSDEEVEKNENEKDVDAEESAANISVAD
SKAMADVVDRLSAATSYSFDTVNHQWCELTVLFPISFLQVDLSQALKEAAMKSVIYEIPN
IKRAITNKEKDVLYLKTEGINIVQMFKYNHLLDLNKLYSNDIHAIANTYGIEAANKVIIK
EIQNVFNVYGITVDPRHLSLIADYMTYNGVFEPMSRKGMEASSSPLQQMSFESSLLFLKE
SVLNAKVDNLRSASACLMVGLPCRSGTGAFSLKHYRKEIT
NT seq
4983 nt
NT seq
+upstream
nt +downstream
nt
atggatatagactcgacattatcaacaactttgaagactatgacatcagttgatccagat
tatattcaatttcatctctttagtgatgaagacataaagcagctaagcgtggtgaaaata
accaactcagtcgcatttgattcattgggtaaccctacaaaaggcgggctatatgaccga
tccatgggtccagttcgagatcgaaatgatcactgtgaaacttgtaataacttgctcttg
cattgccctggccattttggccacattgaattgcctttaatagttgtaaaccctctattc
attaagaatatttacactttatttagagtgtcatgcttaaaatgcttcaaaatacaaatg
gatgatggaatgaaattcattttaaagctacaattagatcttcttgatgctggccatgta
acggcagctttggacctagaaaactttatagtagacttgaaaaatactgacaacttatca
tcaccagataaaccacacaaaattatcaggaaatatcaaaagctacttagaaaatctgat
ggtgttacaaaaacatttcaaaataaaaacattgacaaactcaggaacaatgtcataaat
tactattttaaatcaataaatactgcaaagttatgtatttattgtaaaagtaaattgata
aaagtaacaactacagataataagatcatgtataatacaggtgcagatggaggtaaaaaa
ggtataaagattataatgcctgatgagttacaaagctattgttcagcaattgctgagaat
gatgaagatatccttgtttattgcatacctgtattgaagtatgcaaatatcaagccatgc
accaatttattttttatgcaaacattgcccgtgttgccatctaatgtgagaccatgcaat
atcctagaaggacagttatatgaacatccacaaactaatgtttattcaagtattttaaag
tgttcatatgtagcaagagtcattctacaaattttaaaagaacccgaccctgaaaaagct
attgattccttagatcaaccattgagacaatcataccaaagtgcttatgggaaatctcct
gctgaaaaactgcatttaatctggcaagagctgcagaaacaagttaattatgtacttagc
tgtgaaggagtgggagtatccagtcaaggcttaaagcaaattcttgagaagaaaacaggt
cttattagaatgcacatgatgggaaaaagagttaactttgctgcccgttctgttatcaca
cctgaccctaatgttgatattgatgaaataggaattcctgatgcttttgctacaaaactt
acctatcctgttccagtaactgaatttaatgttgatgaactaagaaaaatggtgattaat
ggtcctaatatacatccaggagcagaaaaattagagataaaaaatggtcgaactataatt
attccagcagattcaatagaaaagagaaaaagcttagcaaaaaggcttctcacacctgaa
gaatacaagaaacctggcttaaaaattgtacacagacatttaataaatggtgatatctta
atactaaatcggcagccctccttacacaaacctagtatgatggcacatagagcaagaata
cttaaaggggaaaagacattaaggttgcactatgccaactgtaaatcatataatgctgac
tttgatggtgatgaaatgaacgcacacttcccacaaaatgagattgctagaagtgaagca
tataatataatgtctgttcgtaaacagtatctagtacctaaggatggtactcctcttagt
gggttgattcaagatcatgttatatctggagtgaggatgtctatgaggggaactttcttt
aataaatcagattaccaacagttggtttttcaaggtctttcaagtcacaagggtgagatc
acattattacctccaactattttaaagccagtaatgctctggtccggaaaacaggtttta
tctacaattattattaacaacatacctaaaggaaaagcatatttgtcacttgtaggtaaa
gctaaaattggtgcaaaagcttggcaaaaattgccctatagaacttggaaagctggaggc
acaccattcagtaatcctaatgatatgtctgaagcagaagtctatataagaaaaggtgag
cttctgtgtggagtactagataaaactcactatggagctacaccttatggattggtgcat
tgcatgtgtgaattgtatggaggggatagttcaactgctttacttagttcattttcgaaa
ttatttactttttatttgcaatggctcggattttcactaggagtaaaagatatcttagtt
tttgaagatgctgataaaaatagggatgaaataatagaacttgttagacaaattggtaaa
gttgctgctctgaaagctacagatttgccagtagatgtagaagatagtgttcttaaagac
acaatagcaaataggatgacaaaagaccccaaatttcgcgcaaatttagacaggcaatac
aaaaatgttctggattcatacacaaataatattaatacagtgtgtttatctcaagggttg
ctggaaaagtttccttcaaacaatctacagcttatggtccaatcaggtgcaaaaggatca
acagtgaacactatgcaaatatcctgtttacttggccaaattgaacttgagggtaaaagg
cctccattaatgatatctggaagatcattgcctagttttcctccatatgatgtgtcccct
agagctggtggatttattgacggtcgttttatgactggcattcagcctcaagaatttttc
tttcattgcatggctggccgtgaaggattaattgatacagctgtaaaaacaagtcgatca
ggttatttacagagatgtcttatcaaacatttagaaggcttaaatgtagcatatgatcat
acagtaagggatgcagatggtagtgttattcaatatgcatatggagaagatggattagat
gtttgcaaatgccaatttttcaagaaagatcaactaccatttcttgatgccaatgctgat
gcagtgataagtaagtccgtaataaagaagctaaaaaaagaagaaatatcgaaagagtta
gtgaaatcacaaaaatcgttaaagaaatggaaaaaaaagtatggtagtccatttaataaa
aataaaacgagcgcattttcaaagttttcggaaattgtgcggagcgatttaaccctccga
gagaaaccgactaatgaaacacgcgacccattttattggaagctggaaaaaaagtggcga
gcacttgatggtgatgaaatgtctcaatacaaacgcaaaccttgtcctgatccagttact
agcaaaatgtctcctgaatacaaattcggtgttatcaatgaacagctagacgacctaatt
cagaattaccttaagaatcgtagtgcaaacatgtttaatgaatatacagaaaacgagaaa
tttattgaaataatgaatgcgaaatttttagcctccatggcagcacctggagagcctgtt
ggtttactggcagcacaatctgttggtgaaccatcaacccagatgacactgaataccttt
cactttgctggtagaggtgatatgaatgtcacactaggtatacctcgtctaagagaaatt
ctaatgacagcatctgctaagctaaaaacaccaaatatggatataccatttctagacact
ttatctaatttaaaccgaaaagctgagaaattaagaaagattatgaatcgcgtgactgta
aatgatgttttggagaagataaatgttgaatgtgaaattgtaacaaaacccagcaggcaa
ttaaagacgacgatgcgattttggttcctaccatatagtcagtataaaccgcaatacatc
gtgaaaccatcacagattataaagcacatgcagaataaatttttccaagaaatgtttact
gttgtacgaaaacaagcgaaaacaaactgtggtgtcctgtggtcaactgagaagcagaag
aaaaaaaaagctgtgaacgatgatggtgatgatgatgacggcttcgaagatgggccaatt
gaaggtggtggtgaagacacaatacccgctgatccagatgctgacagttcagatgaagag
ggtccaaatgatgatgatgataacacagatgtaaaattacggaagagacgaacagaggag
caagagtacgaagacccagagtcaggggaagaggagaaatctgatgaagaagtggaaaaa
aatgagaatgagaaagatgtagatgctgaagaatctgcagcaaacatatcagttgctgac
agcaaagcaatggcagacgtcgttgatcgtttaagtgctgctactagctactcatttgat
actgttaatcaccagtggtgtgaactaacagtactcttcccaatatcatttttgcaggta
gatctctcccaagccttaaaggaagccgctatgaaatcagtaatttacgaaataccgaac
atcaaacgtgcaataacgaataaagaaaaggatgttctttacttgaagacagaaggcata
aatatagtgcaaatgttcaagtacaatcacttgttggacttaaataagctttacagtaac
gatattcatgcaattgccaatacttacggcatagaagctgccaataaagtgattattaag
gagatacagaatgtatttaatgtgtacggaataaccgtggatccacgtcatttgtctttg
atagcggactatatgacatataatggagtgtttgagccgatgagtcggaaaggaatggag
gcatcctcgtctcctctgcagcaaatgtcgtttgagtcttcgttattgttcttaaaagaa
tcagtgttgaatgctaaggtggataatctgcggtcggcgtcggcctgtctaatggtaggg
cttccgtgcagaagtggaactggagcgttcagtttgaagcattacagaaaagaaattact
taa
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integrated database retrieval system
