Ligilactobacillus salivarius JCM1046: LSJ_0325
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Entry
LSJ_0325 CDS
T03340
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase delta chain
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
lsj
Ligilactobacillus salivarius JCM1046
Pathway
lsj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LSJ_0325 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsj03021
]
LSJ_0325 (rpoE)
03400 DNA repair and recombination proteins [BR:
lsj03400
]
LSJ_0325 (rpoE)
Transcription machinery [BR:
lsj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LSJ_0325 (rpoE)
DNA repair and recombination proteins [BR:
lsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LSJ_0325 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
Patatin
Motif
Other DBs
NCBI-ProteinID:
AIR10066
UniProt:
A0A089QGH0
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All DBs
Position
354137..354763
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AA seq
208 aa
AA seq
DB search
MKSKLFERTCTSLELEKFKDANKDELSMIEVAHEILHQRGETMAFVDLTNEIQVYLGKSD
EEIRDRLAQFYTDLNIDGSFISLGDNVWGLRSWYPYDSIDEALVHGEDEEDEERPRKKRK
KVNAFLADVSDDDDVIDYDDDDPEDEDLDNDYDDEDDDDDEGSHELKQYTKDLDDIDDGD
DPEDELADGIEGQLTEFSDADLDEENQD
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atgaagagtaaactgtttgaaaggacgtgtaccagtttggagcttgaaaaattcaaagat
gcaaataaagatgaattgtctatgattgaagtagcccatgagattttacatcaacgtggt
gaaacaatggcatttgttgatttaactaacgaaatccaagtctatcttggtaagtctgat
gaagagatccgtgaccgtctagcacaattctatacagatttgaatattgatggtagcttc
atttcattaggggacaatgtttgggggttacgttcatggtatccatatgattccattgac
gaagcactcgttcatggcgaagacgaagaagacgaggaacgtccacgtaagaaacgtaag
aaagttaacgccttcttggccgatgtttctgatgatgatgatgttatcgactatgatgac
gatgatccagaagatgaagatcttgacaatgattatgatgatgaagatgatgacgacgat
gaaggtagtcatgaattaaaacaatatactaaagatttagatgatattgatgatggcgat
gatccagaagatgaattagctgacggaattgaaggtcaattaacagaattttctgacgca
gatcttgatgaagaaaatcaagattaa
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