Lepeophtheirus salmonis (salmon louse): 121117179
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Entry
121117179 CDS
T08214
Name
(RefSeq) LOW QUALITY PROTEIN: putative leucine-rich repeat-containing protein DDB_G0290503
KO
K09291
nucleoprotein TPR
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121117179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121117179
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121117179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GAS
FAM184
HMMR_N
Baculo_PEP_C
Clr2
Motif
Other DBs
NCBI-GeneID:
121117179
NCBI-ProteinID:
XP_040567448
LinkDB
All DBs
Position
5:complement(13170323..13179227)
Genome browser
AA seq
1445 aa
AA seq
DB search
MESNGNPSRQHFKPPPNRPPPPIVPPPIAPGSPMVSRKTRNSSAERFNPVRRTPPKHPLF
NNNGNNNGSSSRGSSCEVHGPSTVEQFEQQKVFLQNALKDKENLSIVCSNQSAKLNKLES
ERNEWQRKIIETEREKRDLMDRITQEGSQSLKKIEKQKRDHEKIQTECTVIMKERNDAIN
QISSDMKEIERLEQERVQLYGRIDALERERSAEKPPPPPPPSSQNEFLKLKSSLSQISSE
NNELRKQLSDSIRDKEIVAEKLHCAIKSKESLSSELKETLTNSSSQTLEFSKQINDVKRT
ENNLKIEITKLKKENLLISEDFIKVKDELHKSDRLKRDATSQIETLSNEIRSLRAAKESK
DRDLKKIECSQTDIAESNVRLLKEIEDAKSLIKSSQNENDKLHLEFINFKSSSDDKIKSL
ESQIKSNQGQELERNSLIRDLKNKIEKFENEKKNVIKSEKTKRDSVHQRLETEKKEAEDK
LEKMRIQFEKIAIESKRKMTQLEDDRNTHQSYISEFKANLEKKDEENRSLQKKYSILQNE
CNKFKNTSKTDIARVEKEVEDTENRLNDSRRKCDNFQKQIESLSLTSSKLKDEKDKYEKR
IFELEKDVATKNKEFNSKESQISADKRKIEKTLEDKSNKISLLQSEIESLTSKYEKENDY
LNKCLKDMKDKLNQVQRKSNNMEQQYSNEMNSKVNNLNSTIENYKTQIRELNSERELLCS
SSTEEKEKLQMSKDEEISNLQSKIEDFKKKLSSYSKKIKDLENVKKESEGIMQKASQENQ
SLIKKVSTLEGLSRRLEAEKNKAEKAIEEAGKSYKTLQSKFDKLTNEKMELNKKLEGFLK
ESKSGNDKTQKRTRDLEQRIKEKDNEISNKVREFDKERSDLKLQNQRDISEYIAKLNNLT
KEKSETMTNLNNQTRKFQEERDTLQNKFKTEISTLKSKLESLKTDSNKAKKELESQLEKA
LAESHPSLEVELKRLIETGQLPPKIKSLIIELSTKAKPVNGEYPNLKIEKVEEIKVRLKE
AEDKTSELSKALTETQGALKESQEENSKLSSSLEEKKSKKSSFICSRVLKTENEDRIKEL
EEALDTAVEERQELLEAAEKEIEYHRLIAAEIEQNMIDDFEWKLHEIESEYNKKFKSAVA
SSSGATQSTGAIPKTSVSSPGSAMYDVELFEKKLREATNEITRKKDEEFAKLHIQLRKET
DDKLRLERNSLKTALDGVHSSELRKSNDEIKRTITREFSKQIESLQNEVSQYQSQISTLT
LTIQKKDDEVIEARKLATQEGDEKAFKERRQANVLGEKYEHEKEKLEADYSKELATLREE
HDRQIKNLEKRLEVALGAKLEHMEALREEVEEEYADRMETLRDMYQDELRNQTDSLKKEK
DKFYSLEKSLQETLRMKRNEIERYSSLENDYKSEIDELKERLQKQTDEVLKLQTELNEYE
YEDAL
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atggagtctaatggtaatccctctcgacagcattttaagcctcctccaaaccgccctcca
ccacctatcgtacctcctcctatagctccaggcagtccaatggtctcaagaaagactcga
aatagctcagctgaacggttcaaccccgttcggcgaacacctccaaaacatcccctattt
aataacaatggcaacaataatggaagttcctctcggggctcttcatgtgaagtccatgga
ccttcgactgttgaacagtttgaacaacaaaaagtgttccttcaaaatgctctcaaagat
aaggagaatttaagcatagtctgttcaaatcagtctgcaaagttgaacaaactcgagtca
gagagaaatgaatggcaaaggaaaatcatcgagacggagagggaaaagcgagatctgatg
gaccgaattacacaagaggggagccaatcccttaaaaaaatcgaaaaacaaaaaagagac
catgaaaaaatacaaacggagtgtaccgtcattatgaaggagagaaatgacgccattaat
cagatatccagcgatatgaaggaaatagaaagactagagcaggagagagtacagctctat
ggtcgtattgatgctctcgaaagagaaagatccgcggaaaaacctcccccaccacctcca
ccatccagtcaaaatgaattcctcaaattgaagtcaagtctatctcagatttccagcgag
aataacgaactacgtaaacaattaagtgattcaattcgtgataaagaaatcgttgcagag
aagcttcattgtgccatcaagtcaaaagagtcactctcctctgagttaaaagagacatta
accaatagttcatctcaaactttagagttttcaaaacaaataaatgatgttaagagaaca
gaaaacaatcttaaaattgaaatcacaaaactcaaaaaagaaaatctcttgatttctgag
gactttatcaaagttaaggacgaactccataaaagtgatagactaaagcgagatgctact
tcacaaattgagactttatcaaatgagatcaggagtctacgagctgctaaagaatctaaa
gaccgggatcttaagaaaattgagtgttctcaaacggatattgccgagagtaatgttaga
cttttaaaagaaattgaagacgcaaaaagtctcattaaatcatcacaaaatgaaaatgac
aaattgcatttagaatttataaatttcaaatcctcctcagatgacaaaattaagagcctt
gagagtcaaataaaaagtaatcaaggacaagagttggaaaggaatagtctgattcgtgat
ttaaagaataaaattgagaaatttgagaatgagaagaagaatgtaattaaatcagagaag
acgaaaagggacagtgtacaccaaagactcgaaacggagaagaaagaagcagaagataaa
ttagaaaaaatgagaatacaatttgagaaaattgctatcgagagtaaacggaaaatgact
caactggaagatgatcgcaacacacatcaaagctatattagtgaattcaaggccaacttg
gagaaaaaggacgaggagaatcgatctctccagaaaaaatattcgattcttcaaaatgaa
tgtaataaattcaaaaacactagcaaaacagatattgctcgtgtcgaaaaagaagttgaa
gacacagagaatcgtttaaatgactcgagaagaaaatgtgataactttcaaaaacaaatt
gaatccctttcattaacctcttccaagcttaaagacgagaaggacaagtatgagaaaaga
attttcgagcttgaaaaggacgtagcaactaagaacaaggaatttaactccaaggaaagc
caaatctctgccgataaaaggaaaatagaaaaaacactcgaagacaaatccaataaaatt
tccttacttcaaagtgaaattgagagtctcacgtctaaatatgagaaggaaaatgattat
ctcaataaatgtctgaaggatatgaaagataagctaaaccaagttcaacgtaaatcaaac
aacatggaacaacaatactcaaacgaaatgaattccaaggtcaacaatttaaattctact
attgaaaactacaaaacacagatccgtgaactgaattcagaaagagaattactttgctct
agcagtacggaagagaaagaaaagttgcaaatgtcaaaggatgaagaaatatctaatttg
caatcaaagattgaagactttaaaaagaaattatccagttacagcaagaagatcaaagat
ctggaaaatgtcaaaaaagaatctgagggtattatgcagaaggcttcacaagaaaatcaa
agtctcattaagaaagtatccacactcgagggtttatctcgaaggcttgaggccgaaaaa
aataaagctgagaaggcaattgaggaggctggtaaaagttataagacgctacaaagtaaa
tttgataagctaacaaatgaaaagatggaattgaacaaaaagttggagggctttctcaag
gagagtaaatctgggaatgataagacacagaagcgtaccagagatcttgagcaaagaatc
aaggagaaagataacgaaatatccaacaaagttagggaatttgataaagaacgatcagat
cttaaattgcaaaaccaaagggatatttcagaatatattgccaagctgaataatctaaca
aaagaaaaaagtgaaactatgacgaatctcaacaatcaaacacgaaaattccaagaggaa
agggatacacttcaaaataaattcaagaccgaaataagcacattaaaatccaaattagag
tctcttaaaacggactcaaataaggctaaaaaggaattggagtctcaattggaaaaagct
ctggctgaatctcatccatctttggaggttgagttgaagcgtttgattgaaacaggtcag
ttacctcccaagattaaatctctaatcatagaactatctaccaaagcaaaacccgttaac
ggtgagtatccaaatctcaagattgaaaaggttgaggaaatcaaggtgcgtttaaaggag
gctgaagataaaacttcagaattatccaaagcccttactgaaacccagggtgctcttaaa
gaatcccaagaggaaaactctaagctaagttcatctctggaagaaaaaaagtcaaaaaaa
agtagtttcatttgctcgagagtcctcaaaacagagaatgaagatagaatcaaagagttg
gaagaggctctggatacagctgtagaggaaaggcaggagcttcttgaggcagcagagaaa
gaaatagagtatcatcgattgattgcagcagaaattgaacaaaatatgattgatgacttt
gagtggaagcttcatgaaattgaatcggaatacaataaaaagtttaagagtgctgtagca
tcctcttctggagcaacacagtccacaggagctattccaaagacttcagtctcttcacct
ggctctgcaatgtacgatgtagaactattcgagaaaaagttgagagaggccacaaatgaa
ataacaagaaagaaagatgaagaattcgcaaagctacatattcaactccgtaaagaaacg
gatgataaactccgtttagagcgcaatagtcttaaaacagctttagatggagtgcatagc
tctgaactacgaaaatccaatgacgaaattaaaagaactataactcgggagtttagtaag
caaatcgaatctctacaaaatgaagtatcccaatatcaatctcaaatatcaactttaact
ttaaccatccaaaagaaagatgatgaagtcatcgaggcacggaagctagccacacaagaa
ggcgatgaaaaggccttcaaggaacgtcgccaagccaacgttttgggggagaagtacgaa
catgaaaaggagaaattggaggcagactatagtaaagaattagccacacttcgagaggag
cacgaccgacaaataaaaaatcttgaaaagagattagaagtggcattgggagcaaagttg
gagcatatggaggctctccgagaagaagtggaagaagagtatgcagatcgaatggaaaca
cttcgtgacatgtatcaagatgaattgagaaatcaaaccgatagtttaaaaaaggaaaag
gacaagttttattcactggagaaatccctacaagagactcttcgaatgaagcgaaatgaa
attgagagatattcatccctagagaatgactataaatcagagatcgatgagctcaaggag
agacttcaaaaacagacagatgaagtgttaaagctacagactgaactcaatgagtatgaa
tatgaggatgccctctag
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