Lepeophtheirus salmonis (salmon louse): 121117735
Help
Entry
121117735 CDS
T08214
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121117735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121117735
Enzymes [BR:
lsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121117735
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
121117735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF4931_N
BicD
Motif
Other DBs
NCBI-GeneID:
121117735
NCBI-ProteinID:
XP_040568151
LinkDB
All DBs
Position
5:64178547..64183018
Genome browser
AA seq
1391 aa
AA seq
DB search
MKEQYRETDVIRKISHVCFGMQSSEEMEQCATIHTVAKNLYNQDSSRTPVSYGVLDYRMG
TSQQDKNCTTCGKGLPDCIGHFGYIDLELPVYHVGFFRSIIQVLQSICKSCCRILLKPKS
ANSFLKKIRSKDLGYLTKKKLRKKILDECKKMTHCPFCHALNGVVKKAGLLKISHEKYRY
MKKTNQIILDTIEEYDFASKDNKEIESLVSNHHALVHYLNPLEVLHMFERIRDEDISLLL
MNSESAHPKDMILTRIPVPPLCIRPSVISDLKSGTNEDDVTMKLTEIVFLNDVIMKHRLS
GATAKMIQDDWDFLQLQSALHFNSQLSGIPADKAPKKTTRGFVQRLKGKQGRFRGNLSGK
RVDFSSRTVISPDPNLRIEQVGVPIHIAKILTYPERVHRANLGLMRKLIKNGPDIHPGAN
FVELKSKDGTTIRKYLKYGKRERIAQDLKIGDLVERHMMDDDIVLFNRQPSLHRISIMCH
RAKILEHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEARAEALVLMGNKSNLVTPRNGE
LLIAATQDFITGAYLLTSKETFLDRGKVCQIISQILASSPDDDIKIDIPPPAIMKPVQLW
TGKQIFSLLLRPNKRVRTKANLSAKGKTYTKDEEFCVNDSWVLIRNSELLAGAMDKSTVG
SGTKSSIFYILLRDWGQDIACTAMWRLSRIASWFLMNRGFSIGIGDVTPSKSLLDSKKDL
VEKGYNRCDEYISQLNAGTLQSTAGNSEEETLESLILKELSAIRDKAGKASLTALHKSNA
PLTMALCGSKGSFINISQMIACVGQQAISGKRIPDGFEDRSLPHFGRKSKIPAAKGFVEN
SFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLVQHYDNTVRNSSNE
VIQFVYGGDGLDPMMMEGKDRPVDFQRVLDHIKAISPYSTEDPMDAETLMSATDELINDL
IGPSQEFKEELRNFLIEYSKKVAKVWKLFNLNAGKFRPVEKHIERLTLSQLVEFVEKCKE
KYMKAAIEPGTAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKKI
STPIIKVFLEDDTDPEFARIVKGRIEKTTLGEVTEYLEEVFLPDDCLLLIKLDIERIKLL
KLEISVETIRYSLCTSKLKIKPRDCQIIGDSVITVKPGVSSKTTMYYQLMFLKEAIPSVV
IIGLPTVERAIIHMDDSSKEKKYLLFVEGDNLREVLATKGVKSSLTTSNNTCEVALTLGI
EAARSTIMNEIQYTMQSHGMSIDRRHITLLADLMTCRGEVLGITRHGLAKMKESVLMLAS
FEKTSDHLFDAAYHGQKDAIRGVSECIIMGIPMPVGTGLMKLLYKPDKFESPLQREVLFD
STEFHIPGYET
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagcaatatcgagagacggatgtgatccgtaaaatttctcacgtttgctttggg
atgcaaagttccgaagaaatggaacaatgcgccacgattcatacagttgccaaaaacttg
tataatcaagattcatcccgaaccccagtgtcgtacggagttttggactatcgtatgggc
acttctcagcaagataaaaattgtacaacatgcgggaaaggccttccagattgcatcgga
cattttggatatatcgacctcgaattacctgtataccatgttggatttttccgatctatt
atacaagttctacagtccatctgcaagtcatgttgccgaattcttctcaaaccaaaatcc
gcgaactccttccttaaaaaaatccggtccaaggatttaggctacttaacaaaaaagaaa
ttgcgtaaaaaaatcctcgatgaatgtaaaaaaatgacacattgcccattctgtcatgcc
ctcaatggagttgtcaaaaaagctgggcttctaaagatctctcacgaaaaatatcgatac
atgaaaaagacgaatcaaattatccttgatacaatcgaggaatatgactttgcgtctaaa
gacaataaagaaattgagtctctagtttcgaatcatcatgctcttgtacattatttaaac
ccgcttgaagtccttcatatgtttgagcgcattcgggatgaggacatttctcttcttctc
atgaattctgaatctgctcatccaaaagatatgattctaacacgtatacccgtgcctcca
ctatgtattcgcccttctgtgatatccgatctaaaatctggaacaaatgaggatgatgtg
accatgaagctaactgaaatcgtttttttaaatgacgttatcatgaaacatcgtctttca
ggtgctactgctaaaatgatacaggatgattgggactttttacaattacaatcagctctt
catttcaacagtcagttatcgggaattccagcggataaggcacccaaaaaaactactcgt
ggttttgttcagaggcttaaaggaaaacaaggccgattccgtgggaatttatcaggtaaa
agagtagatttttctagccgaactgtaatatctccagatcctaatctacgcattgaacaa
gttggcgttcctattcatattgcaaaaattttaacgtatcccgaaagggttcatcgagca
aatttaggtcttatgagaaaattaattaaaaatggaccagatattcatccaggtgctaat
ttcgtcgaactgaaatcaaaggatggaaccactattcgtaaatatctcaagtacggaaaa
cgtgaaaggattgcacaggatttgaaaattggggatttagttgagcgtcatatgatggat
gatgacatcgtactctttaatcgacaaccttctcttcatagaattagtattatgtgccat
cgagcgaaaatacttgaacatcgaacttttagattcaatgaatgtgtttgtacaccctat
aacgcggattttgatggtgatgaaatgaacttacatttaccccaaactgaagaagcacgt
gctgaagcacttgttcttatgggcaataaatctaatcttgtaactcccaggaatggagaa
ctattaattgcagccactcaagattttattaccggagcatacttgcttacttcaaaagaa
acattcttagatcgtggaaaagtttgtcagataatatcacaaattcttgcttcatctccg
gacgacgatatcaaaattgatattcctccccctgcaattatgaaaccagtccagttatgg
acagggaaacaaatatttagcttacttttacgaccaaataaacgagtgcgcacaaaggct
aatctttcggctaaaggaaaaacttatacaaaggatgaagaattttgtgtgaatgactct
tgggttttaattagaaattcagagttactcgctggagcaatggacaaatctactgtcgga
tctggtacaaaaagcagtatattttatatattacttagagattggggccaagatattgct
tgcactgcaatgtggagactttctcgaattgcatcttggtttttaatgaatagaggattt
tccatcggaataggagatgttactcctagtaagagcttgcttgatagtaaaaaagatctc
gttgaaaaaggttacaaccgttgcgatgagtacattagccaattaaatgctggaacgtta
caatctactgcagggaattctgaggaagaaacacttgaatcactcatcttaaaggagtta
tcagccattcgagataaagctggaaaagcttctttaactgctctccataaatcaaatgca
ccacttacaatggctctatgtggctcaaaaggttcttttatcaatatatcacaaatgata
gcatgtgttggccaacaagccataagtggaaaaagaattcctgatggtttcgaggatagg
tctctacctcattttggtaggaaatcaaaaattcctgctgccaaagggtttgtcgaaaat
agtttttactccggtcttaccccaactgaattttttttccataccatgggtgggcgtgaa
ggtttagttgatactgctgttaaaactgctgaaacagggtatatgcaaagaagacttgta
aaatcacttgaggatctcgttcaacattacgataatacggttagaaattcaagtaatgaa
gtaattcaattcgtatacggaggtgatgggcttgatcccatgatgatggaaggtaaagat
agaccagtggattttcagagggttttagatcatattaaggccatttctccatactctact
gaagatcctatggatgctgagactttaatgtctgctactgatgagttaatcaacgatctt
ataggcccaagtcaagaattcaaagaagagctgagaaacttcttaatagaatattctaaa
aaagtagctaaagtatggaaactattcaatttgaatgcagggaaatttagaccagtagag
aagcatattgagcgacttacactatctcagttggttgaatttgttgaaaaatgcaaggaa
aaatatatgaaagctgcaattgagcccggaactgctgtaggagcgctttgtgcacagtcc
attggtgaacctggcactcagatgactttgaaaacgtttcatttcgccggtgttgcctca
atgaacattacacttggtgtaccacgtattaaggaaattattaatgcttcgaagaaaatt
agtactcccattatcaaggtttttctcgaggacgatacagacccagaatttgcaagaatt
gttaaaggtcgcattgaaaaaaccactctgggagaagttaccgaatatctggaggaagta
tttttaccggatgattgtttgttgcttattaagttagatatagaacgaataaaactactt
aaattggaaatttctgtagaaaccattcgatattccctgtgtacatcaaagttaaaaata
aagccaagggattgtcaaatcattggagactctgtcataactgtcaagcctggagtaagt
agtaaaactacgatgtactatcaattaatgttcctcaaagaagctattccaagtgttgtc
attattggactgcctacagtcgaaagggctattattcacatggatgactcttcgaaggaa
aaaaaatatctactatttgttgaaggagacaacttgagagaagttttggcaaccaaagga
gtcaaaagctctcttacaacatccaataacacatgtgaggttgccttaacgcttggaatt
gaagctgctcgttctactataatgaacgaaattcagtataccatgcaaagtcatggaatg
tcaatcgatcgacgtcacattacattactagctgatttgatgacgtgtcgcggtgaggtc
ttgggcattactcgtcatggacttgccaaaatgaaggaatcagttctcatgttagcgtct
tttgagaagacttctgatcatctcttcgatgctgcctatcatggccaaaaagacgctata
agaggtgttagtgagtgcattatcatggggatccccatgccagtcggtactggattaatg
aaattactatataaacctgacaaatttgaatcccccttgcaaagagaagttttgtttgac
tcaactgaatttcacattcctggctacgaaacataa
DBGET
integrated database retrieval system
