Lepeophtheirus salmonis (salmon louse): 121118999
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Entry
121118999 CDS
T08214
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03020
RNA polymerase
lsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121118999
09124 Replication and repair
03420 Nucleotide excision repair
121118999
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsm03021
]
121118999
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121118999
Enzymes [BR:
lsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121118999
Transcription machinery [BR:
lsm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
121118999
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
121118999
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
121118999
NCBI-ProteinID:
XP_040569541
LinkDB
All DBs
Position
5:32382417..32386321
Genome browser
AA seq
1176 aa
AA seq
DB search
MYDQEEEFYDQDEDSEVIPNEIWQEACWIVISAYFEEKGLVRQQLDSFDEFIQMNVQRIV
EDFPQIDLQGEPNYSHGEMEAPPRYLLKFEQIYLSKPTHWEKDGAPSPMMPNEARLRNLT
YSAPLYVDITKTIVREGEDPVETQHQKTFIGKIPIMLRSTYCLLSGMTDRDLTELNECPL
DPGGYFIINGSEKVLIAQEKMATNTVYVFSVKDSKYAYKTEIRSCLEHSSRPTSTLWVNM
LTRGGQNIKKSAIGQRIVGILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPELME
MVKPSLDEAFVIQEQNIALNFIGTRGAQPGVTREKRIKYAKEILQKEMLPHVGVSDFCET
RKAYFLGYMVHRLLLAALGRKELDDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEMRMYA
QKFIDKGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQSRAGVSQVLNRLTFASTL
SHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETPEGGAVGLVKNLALMAYVSVGNTPS
PILEFLEEWSMENLEEIAPSSISDATKIFVNGCWVGIHRDPEQLMTTLRKLRRQMDIINA
EVSMIRDIRDREIRIYTDAGRICRPLLIVEDCRLLMNKQHIEMLKEREYNNYQWQDLVAS
GVVEYIDTMEEETTMIATSPESLQPAEDGTFYCQTWTHCEIHPAMILGVCASIIPFPDHN
QSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMDYLRFSELPAGIN
SIVAIATYTGYNQEDSVILNSSAVDRGFFRSVFMRSYKDSELKRNDQEECFEKPSRDTCQ
GMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLQENDDELEGKTQRFTKRDSSTFLRN
SETGIVDQVMITLNSDANKFVKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTC
EGISPDIIINPHAIPSRMTIGHLIECLQGKLGANKGEVGDATPFNDAVDVQKISKLLSEY
NYQPRGNEVMYNGHTGRKMNAQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGR
ARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRVHICNICGLIAIANLRNNTFECK
GCKNKTQISQVKLPYAAKLLFQELMSMNIAPRMMVD
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatcaggaagaggaattctatgaccaagatgaagattctgaagtgatcccaaat
gagatttggcaggaagcctgttggattgtgatatctgcctactttgaggaaaagggtctt
gttcggcaacagttggactcgttcgatgaattcattcaaatgaatgtccaaaggattgtg
gaagatttcccccaaattgacttgcaaggagagcccaactattctcatggagagatggag
gctccgccgcgctaccttctcaagtttgagcagatctacctgagtaagccaactcattgg
gagaaggacggagctccgagccccatgatgcccaatgaagctcgcttgcgcaatctcacc
tactctgctccactctatgtggatattaccaagactatcgtgagagagggagaagacccc
gtggaaactcaacatcaaaaaacattcattggtaaaattccaatcatgttgcgctccaca
tattgtctacttagcggaatgacggatcgggatttgacagagctcaacgaatgtcctttg
gatcctggggggtattttattattaatggatcagagaaagtactgattgcccaagagaaa
atggcaaccaacactgtgtacgtattttctgtcaaagactccaaatatgcttacaagacg
gaaattagatcatgccttgaacattcctcaaggcccacctctactttatgggtaaacatg
ttgacgcgcggaggtcaaaatattaaaaaatcagccattggtcaacgtattgttgggatt
ttaccttatattaaacaagaaattccaattatgatagtatttcgtgcactcggttttgtg
gcagatcgagatattcttgagcacattatttatgactttgatgatcccgaacttatggaa
atggtcaaaccttccttggatgaggcgttcgtaatccaggaacaaaatattgctttaaat
tttatcggtactagaggagctcagcctggtgtaacaagggaaaagcgtattaaatacgct
aaagaaattttacaaaaagaaatgttgccgcatgttggtgtatccgatttttgtgaaaca
aggaaggcttactttttgggttatatggtacatcggttattgttagctgctcttggaaga
aaagaacttgatgatcgggatcactatggaaataaaagactcgatttagctggtccgctt
ttagcatttctatttagaggtctctttcgcaacttaatgaaagaaatgagaatgtatgct
caaaagtttatcgacaaaggaaaggattttaatcttgaactagcaattaagacgagaatt
atatctgacggtttaaagtactctcttgctactggtaattggggagatcaaaagaaagcc
catcaatctcgtgctggtgtaagtcaagtattgaataggttaacatttgcgtctacatta
agccatttaagaagaataaattcacctataggtagagatggtaaattggccaaacctaga
caacttcacaataccctttgggggatgatttgtcctgctgaaactcctgaaggtggtgct
gtaggtcttgtgaaaaatcttgctttaatggcctatgtatctgttggaaacactccatct
cctattttggagtttttggaagaatggagtatggaaaatctagaagaaattgcacctagt
tctatatcagacgccactaagatttttgtgaatggatgttgggtcggaattcatagagat
cctgaacaacttatgacgacactcagaaaattgagacgtcaaatggacattattaatgca
gaagtgtcaatgattcgtgatatacgtgatcgggaaataagaatttatacagatgccgga
cgtatttgtaggcctttacttattgtggaagactgtcgtcttcttatgaacaagcaacat
attgaaatgcttaaagaaagagagtataacaattatcaatggcaagatcttgtagcttct
ggtgttgtcgagtatattgatacaatggaagaagaaaccacaatgatcgctacaagtcct
gaatcattacaacctgctgaagacggtacgttttactgtcagacatggacacattgtgaa
attcatcctgctatgattcttggtgtatgtgcatcgattattccctttcctgaccacaat
caatctcctagaaatacctatcaatctgctatgggtaaacaagctatgggagtttatatc
acaaatttccacgtaagaatggatacattggctcatgtattgtattatcctcagaaaccc
cttgtaacgacgaggagcatggactaccttcgattttctgaacttcctgctggaattaat
tctatcgttgctattgctacttatacagggtacaatcaagaagattctgttatcttaaat
tcatctgcagtagatcgaggattttttagatccgtgtttatgcgttcatataaggattca
gaacttaaaagaaatgatcaagaagaatgctttgaaaaaccttctcgtgatacgtgccaa
ggcatgagaaatgctatatatgacaagttagacgatgatggaatcattgctcctggttta
agagtttctggagatgatgttgtaattggtaaaacaattacacttcaagagaatgatgat
gaattggagggaaagactcaaaggtttactaaaagagactcttcaacatttcttcggaat
tcagaaactggaattgtagatcaggttatgataacattaaactctgatgctaataaattc
gtgaagataagagtacgttcagtgcgtatccctcaaattggagacaaatttgcttcaaga
cacggacaaaagggtacatgtggtattcagtacagacaagaggatatgccttttacatgc
gagggaatttctcctgatatcatcattaatcctcacgctattccgtctcgtatgactatt
gggcatttaattgaatgccttcaaggtaaacttggtgcaaacaagggagaggttggcgac
gcaacaccattcaatgatgctgttgatgtacaaaagatttctaaactcctaagtgaatat
aattaccaaccaagaggaaatgaggttatgtacaatggtcatactggaagaaaaatgaat
gctcaaattttccttggtcctacctattaccaacgtctaaaacacatggtcgatgacaaa
attcatagtcgagcgagaggacctcttcagattttagtgcgtcaacccatggagggtcgt
gccagggacggtggacttcgttttggggaaatggaacgagattgtcaaatttcacatgga
gcagcacagtttcttagagaaaggttgtttgaagtttcggatccttacagagttcatata
tgtaatatatgcgggttgattgcaatcgctaatttaagaaacaatacttttgagtgcaaa
ggctgtaaaaataagactcaaatatctcaagtcaagttaccttatgccgcgaagctatta
ttccaagaattgatgtctatgaatattgctccaaggatgatggttgattaa
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