Lepeophtheirus salmonis (salmon louse): 121120155
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Entry
121120155 CDS
T08214
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121120155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsm03400
]
121120155
DNA repair and recombination proteins [BR:
lsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121120155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
AAA_6
Motif
Other DBs
NCBI-GeneID:
121120155
NCBI-ProteinID:
XP_040570932
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Position
6:complement(33449749..33453102)
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AA seq
1025 aa
AA seq
DB search
MSKSGGNSILNYFKTIESPKNSRKRGLSPPEADLKEDERCKKTKVDLSVDKKVEKVEKVE
RMNVRDKERDKERDNDKISYESLEKKCFWSGSVEFVHLSLKFLRGSEIRDGKGRSPEDVE
YDGTTLTVPESFLANQTPAQRQWWELKSQHFDKLLFFKMGKFYECFHMDAVDVVKHCGIQ
FMKKDYAHCGFPEVSFHRFADILISNNFRIARIEQTETPLSMEARCKSSTKKITKFDKVI
RREICQVYSIGTQITESSSRDYNYMVALIIRDSRVGICFVDTTVGVIHLGEFEDDGQELA
RTQLNLYHLNPVEILLDNVSVNNSKGLLKMLNSRFPGVRRSFIKSLNEFPSSKTILDTII
EKKYYNHFDSWPLVLKSYVTLGKDDTPIPSDGSDLILRAFGAVLYYLSEAMIDHGILVQG
KVEKFTLIDETCPDFSTKNLILDDSSIFNLDILSKTKKCKSLFGVLDSTVTPFGNRLLKK
WVCRPLFLPSDIRERQEAVMELSGKADIPENCIDDLRTSIKSLPDLERLMGIIAANGIAY
PSEHPENRAVYFDGGLMSKKKIRLFINCLQGFNSAHDTLKKISKKYNFKSAILHKMMHLD
YETQEIDTILKYYDESLDNEKALKEGKILPCKGVDTQYDQIVMEKLSIENDSSNYIKQVG
KDLGSRNVKFTGTGKNAFQIEIPTSSCTELPAAFEYTSRRKGFNRYVTKESKEFLDRLAK
VSEKESEVLKSVSTRIFHKFSTHFDAWQKIVNTISVLDALLSLARYSFFSIDGTFPTILP
TDKSKTPSLKYEKGYHPIIHQVGNGNYIPNDLDMDAPLFILTGANMGGKSTFMRQTALLA
ILAQIGCKVPARSMTITPIDRIFTRIGASDNILCGESTFMVELLETSKILRSMTFWSLII
VDELGRGTTTYDGMSLASSTVNYLSQTGNRVLFSTHFHRITDNFYSDKKISLYHMAFVME
RENELTFLYKLAQGSCSKSHGFNTARLAGLSDDIISKGSKASAKYERKEKVVDSLLKFIG
EVLNI
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaatccggtggaaatagtattttgaattactttaagaccatagagtctcctaag
aattctaggaaacgaggcctctctcctcccgaagcggatctgaaggaggatgaaagatgc
aaaaagacaaaagtggacctgagtgtggataagaaagtggagaaagtggagaaagtggag
aggatgaatgtgagggataaggaaagagacaaggagagggacaatgacaagatatcttat
gaatctcttgagaagaaatgtttttggagtgggagtgtggagtttgttcatctctcactc
aagttccttagaggaagtgaaattcgagatggaaagggtcgttctccagaagatgtggag
tatgacgggactacattgactgttcccgagtctttccttgcgaatcaaacccccgcacaa
cggcagtggtgggaactgaagagccagcactttgataagttgcttttcttcaaaatgggc
aagttttatgaatgctttcatatggatgcggtggatgtcgtgaagcactgtggaatacag
ttcatgaaaaaggattacgctcattgtggttttcctgaggtgtctttccaccgatttgcc
gacattctcattagcaataactttcgtattgctcgtatagaacaaacggaaactcctcta
tcaatggaagcgagatgcaaaagttccactaagaaaattactaaatttgataaggttatt
aggagagaaatatgtcaagtctacagtattgggacacagataacggaaagctccagtagg
gactataattacatggtagctcttatcataagagactcacgtgttggaatttgtttcgtt
gatacaactgttggagttattcatttgggagaatttgaagatgatggtcaagaattggcc
agaactcaattaaacttatatcatttgaatcctgttgaaattttacttgacaatgttagt
gtcaataattccaaaggcctattgaaaatgttgaattctagatttcctggagtgcgtcgt
tcatttattaagtctcttaatgaatttccgtcttctaaaactatcttggatacaattata
gaaaaaaaatattacaaccacttcgattcttggcctcttgttttaaaatcatatgtgact
ttgggaaaagatgatactcctataccatcagatgggagtgacctaatcttaagagccttt
ggcgctgtgttgtattatctctcagaggcgatgatcgatcatgggatcctagtacaggga
aaagttgaaaagtttacgcttattgatgaaacttgtcctgatttttcaaccaagaacctc
attcttgatgactcaagcatcttcaatctggacatactttccaaaaccaaaaaatgcaaa
agtctctttggagtattggactcaaccgtgacaccttttgggaatcgattactaaaaaaa
tgggtatgtcgtcctttatttcttccttctgatatccgtgaaagacaggaagccgtaatg
gaactttcaggtaaggctgatattccggagaactgcatcgacgatttgcgaacttcaatt
aaaagtctacctgaccttgagcgtcttatgggaatcatagcagctaatgggatagcctat
ccttccgaacatcctgagaatcgtgctgtatacttcgatggaggtcttatgtcaaaaaag
aaaataaggctttttattaattgtctccagggcttcaattctgctcatgatactttgaaa
aaaattagtaaaaaatataattttaagtctgccattcttcataaaatgatgcaccttgac
tatgaaactcaagaaatcgatactattttgaaatattatgatgaatccttggataatgaa
aaggcacttaaagaaggcaaaatcctaccttgtaagggtgtcgatactcagtatgatcaa
atcgtgatggaaaaattgtctattgagaatgatagctcaaattacattaagcaagtggga
aaggaccttggatcgcgtaatgtgaaatttactgggacgggaaaaaacgcctttcagatc
gaaattccaacgagtagctgcacggaacttccggcagcgtttgagtatacatctagaaga
aaaggttttaatcgatatgttacgaaagaaagtaaggaatttttagatcgattggcaaaa
gttagcgagaaggagtcggaagttcttaaatctgtatcaactcgtatctttcataaattc
tctacacattttgatgcatggcaaaaaatagtcaatactattagtgtgttggatgcgctt
ttgtctcttgccagatacagtttcttttcaatagatggtacctttcctacaatacttccc
actgataaaagcaaaacgccgtctcttaaatatgagaagggatatcatcctattatccat
caggtaggaaatggaaactacattcctaatgatcttgatatggatgctcctttattcata
ctgaccggtgcaaatatgggagggaagtcgacttttatgcgacagactgctcttttagct
attcttgctcaaataggatgtaaagttcctgctcgttcaatgaccattactccaatagat
agaatatttacgcgtattggtgcttctgacaatatactttgtggagagtcaacttttatg
gtagaactcttagaaacttcgaaaatacttcgttccatgaccttttggtctcttatcatc
gttgatgaacttggtcgaggtacaactacttatgatggtatgtcattggcatcttctacg
gtgaattatctttctcaaacagggaatagagttttattttcgactcactttcatcgaatc
actgacaatttctacagcgataaaaaaataagcttgtatcacatggcttttgttatggag
agggaaaatgaacttacattcctttataaactagctcaaggatcctgttccaagtctcat
gggtttaatactgctagacttgctggtttgtctgatgacattatttctaaaggctctaag
gcgtcggcaaagtatgaaagaaaagaaaaagttgttgactccctattgaaatttatagga
gaagtgttaaatatttaa
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