Lepeophtheirus salmonis (salmon louse): 121129395
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Entry
121129395 CDS
T08214
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lsm
Lepeophtheirus salmonis (salmon louse)
Pathway
lsm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121129395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsm03019
]
121129395
Enzymes [BR:
lsm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
121129395
Messenger RNA biogenesis [BR:
lsm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121129395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_22
ATP_bind_1
TniB
MMR_HSR1
AAA_16
CbiA
AAA_24
CTV_P13
AAA_14
nSTAND3
ATPase_2
AAA_10
Motif
Other DBs
NCBI-GeneID:
121129395
NCBI-ProteinID:
XP_040581050
LinkDB
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Position
14:complement(29599979..29602004)
Genome browser
AA seq
425 aa
AA seq
DB search
METNGHLYTLKQDEELRIEVECPKNETITIELKSGTAEIFGTEMVMNTKYKFLPGTNFSI
FTYHGCQVLILGNFETSPYASKETPMIMYLNTHAALEEMRKDAERKGKRGPVFMVVGPTD
VGKSTLCRLFLNYAVRMGRRPIYVDLDVGQGSISLPGTIGSILVERPASIDENGFSQNAP
LVYHFGQKSPGQNTKLYKLLVSKLSQVVRQRLDSNKKADASGIIINTCGWIRGEGYDLIK
HIAKAFEVDVITVLDQERVYNDLKKDMPDFVKIMLQPKSGGVVNRSQSFRIQGRDLHIKR
YFYGRYLDLFPHSFDMSLSDLKNRIYRVGGPRLPNSCLPLGAIPEPNYKTKLIPVPLAPK
DLLNHILSVSFSTHEDDAILSNIAGLICITNVNVDENKLTILSPQPKPLPNTILLLSDIK
YIDSD
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggagactaacgggcacttgtatactttgaaacaggatgaagaactacgaatagaagtg
gagtgtccaaaaaatgagacaatcacgatagaacttaaatcagggactgccgaaatattt
ggaactgaaatggtgatgaacactaagtacaaattcctgcctggtaccaatttctctatt
ttcacctatcatggatgtcaagtattgattttggggaatttcgagacttcaccctacgcc
tcaaaagaaactccaatgatcatgtatttgaatacacatgctgctcttgaagaaatgcga
aaggatgctgaaagaaagggcaagaggggtccagtatttatggttgtgggcccaacagac
gttggtaaatccacgctgtgtcgactatttttaaattatgcggtaaggatggggagacgt
ccaatttacgtagatcttgatgttggtcaaggatctatttcattaccaggtactatcggc
tccattcttgtagaacgtccagcatccattgacgagaatggtttctctcaaaatgctcca
ttggtatatcattttggtcaaaagtctcccgggcaaaatacaaaattatacaaactttta
gtatcaaaattatcccaagtcgtaagacaaagacttgattcaaacaaaaaggcagatgca
tctggaattattatcaatacatgtggttggattcgaggagagggctatgatttgattaaa
catattgctaaagcctttgaagtggatgtgataacagttttagatcaagaaagggtttac
aatgatttgaaaaaggatatgccagattttgttaaaatcatgttgcagcccaaatcagga
ggagttgtgaacagaagtcaatccttcagaattcagggaagagatttgcatataaagcga
tatttctatggtcgttatctggatttatttccacattcttttgatatgagcctatcagac
ttgaaaaatagaatttatagagtaggtggacctaggctacctaatagttgcttacctctt
ggcgcaatacctgaacctaattataaaaccaagctcattcccgtccctcttgctcctaag
gatcttttaaatcatattctttctgtatcattttcaacccatgaggatgatgctatttta
tccaacattgccggtcttatatgcattacaaatgtgaatgttgatgaaaataaattgact
attttatcgccacaacccaagccacttccaaatacgattcttcttctctcagatataaag
tatattgactcagattaa
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