Lonchura striata domestica (Bengalese finch): 110468915
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Entry
110468915 CDS
T05897
Symbol
TARBP1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsr03016
]
110468915 (TARBP1)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110468915 (TARBP1)
Enzymes [BR:
lsr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
110468915 (TARBP1)
Transfer RNA biogenesis [BR:
lsr03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
110468915 (TARBP1)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110468915 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
Motif
Other DBs
NCBI-GeneID:
110468915
NCBI-ProteinID:
XP_031360189
LinkDB
All DBs
Position
3:complement(43715211..43746780)
Genome browser
AA seq
1583 aa
AA seq
DB search
MEVVLADALLARCGDRAALLRALGAPLSAERAEALRLLLQRLAAGGPAAAGEAEALRRAA
WEVALERCRPLLRGGEGAAGSGERARALRAARGALRHCVQLCGAPLAARLARDALAELAA
GGGAGAEEAAVEALVAAAPRLEEPELLSRCAAAALALVREEGEGEAAAALVAGRLLPALG
ANGAALPRVWEGLLGAGGAPRAGRALLALSALADALLPRGAAGPGLDARLCPRFWRLVQE
GLTERDALCRKRARYLLKRALDLSGGQRAELRCPPDGGHESSLFWWSAEKNEQLLHFWET
YILVMETLEGNQIHVIKPVLPKLNSLYELAISGDKECWLFHPSWHVCIYRRMFESENKTL
TKEGILHFLELYETKHLPNSPGFSEFVIGPLMDALSESSLYSRTPGQSIGACPPLGMRLQ
KFLATYLTLLPEEEKGSFLLKFIQKMTSRHWCAVPILFLSMALASIPACKVLGAEGLHAL
RDVLQCTMITHQILLRGAAQCYLLQTTMHLTDVEKVSFPEVSSFLLSLRPEESLRRDTLL
WTELCSWLQENDRCFRKSVTSDFGHQETPSLCEYVHSLVGEYLKTPASERENCFMPDWFE
AKLVSTMILLAADVEQMKNKYSGKSNIEWTELEAFLNPLLDVLMKLGSNAYIPTLKTDKS
LQLLLKLLQTRSLKCSNTQDDEVLFFIWKSLVTPVESILEFILRRLATNELSTVGDLDRC
DMYLALIPEIVNLALKGNLKKMPSIKNFLSSLINASIRNLQERNSEKEPKVKEQIRKVAS
MASLAAVCDIMDGELEVHLKSLPSVDALKKFISFSQLNEVLKKPSYIEEKNSICEETSSQ
GWGKIVARYVRDQWICRRFVFNSFATLAQEYEETSVMSLSTAERSKEILQSALEALSILP
SDQVSPVFDCMKVLVPKLLDSSEALCIEAFDLAWKIISSLSNTQLIFWANLKAFVRFIFD
TEVLAVAASAKGQAYNKIKEIIFNLIDLSTTKTGVFNVVLSHCCQSWIFPTVDERSAFTN
AFLNAGNYSELITEACVFGTVFRKDQRHIQDVHAFIENLGEKCAANVVAESTNRDDHYVR
ICAVKFLCLLDGSNILHKTFMEDIFIKLLDKDELVSKSRTRYYANSLQHRIKNRVWQTLL
VLLPKLNQNFLCGTLDRVFQAGFSNNQASVKYFIEWIVILSLHKYPQFLDKFWDCFCYDE
EKLKKSICTFLSVLAHFDIILQNTSEKKPALKKALIVVLQWCFSHNFSVRLYALIALKKI
WGMCRMLHVEEFEALTPVIESSLQQVENMHGTGNARRNWQRIQDHFFFATFHPVEDYSLE
TIFYILPRLAELAEDEWISLSKFDRFTDIPLPAAFQWCHSRTELRDLKPSDWSQQDMGSH
LAEADSQTEWTDVQKKIIPWKNSTPSLDLETAFQDRAVKLGKSNSRLIVVASLIDKPTNL
GGLCRTSEIFGASALVVGSLHYIQDKQFQHLSVSAEQWLPLVEVKPSQLVDYLQQKKTEG
YTIIGVEQTAKSFDLTEYCFPEKSLLLLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNV
HVSGALLIWEYTRQQVIKQKQQQ
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggtgctggcggacgcgctgctggcccgctgcggggaccgcgccgcgctgctg
cgggcgctcggcgcgccgctctccgccgagcgggcggaggcgctgcgcctgctgctgcag
cggctggcggcgggcgggccggcggcggcgggcgaggcggaggcgctgcggcgggcggcc
tgggaggtggcgctggagcggtgccggccgctgctgcggggcggggagggcgcggcgggg
agcggggagcgggcgcgggcgctgcgggcggcgcggggcgcgctgcggcactgcgtgcag
ctatgcggggcgccgctggcagcgcgcctcgcccgcgacgcgctggccgagctggcggcg
ggcggcggggcgggcgcggaggaggcggcggtggaggcgctggtggcggcggcgccgcgg
ctggaggagccggagctgctgtcgcggtgcgcggcggcggcgctggcgctggtgcgggag
gagggcgagggcgaggcggcggcggcgctggtggccgggcggctgctgccggcgctgggc
gcgaacggcgcggcgctgccgcgcgtctgggaggggctgctgggcgcgggcggggcgccg
cgggccgggcgggcgctgctggcgctcagcgccctggcggacgcgctgctgccgcggggc
gcggcggggccggggctggacgcgcggctgtgcccgcggttctggcggctggtgcaggag
ggcctgacggagcgggacgcgctgtgccgcaagcgggcccgctacctgctgaagcgagcg
ctggacctgagcggcggccagcgcgccgagctgcgctgcccgccggacggcggacacgag
tcgagtctgttttggtggtctgctgagaagaacgagcaactcctgcacttctgggaaact
tacattttggtaatggaaactttggaaggaaaccagatccatgtcataaagccagtatta
ccaaaactaaacagtttatatgaacttgccatatcaggggataaagagtgttggctgttt
cacccatcgtggcatgtgtgcatttatagacgaatgtttgagagtgagaataaaacattg
acaaaggaaggaattcttcattttctggagctttatgaaacaaagcatcttccaaattct
cctggtttctcagagtttgttattgggccgctaatggatgccctctcagaaagttccctc
tacagcaggacaccaggtcaatcaataggagcctgtcctcctttgggaatgaggttacag
aagtttttggctacttatctcactcttctcccagaagaagaaaaaggtagcttcctgtta
aaatttattcagaagatgacaagtaggcattggtgtgctgttcctattttgtttctttct
atggctttggcatctatccctgcatgtaaagtacttggtgctgaaggacttcatgcttta
agagatgtcctccagtgtactatgattacacatcagattttgttgcgtggagctgctcag
tgctatcttcttcagacaactatgcacttgacagatgtggagaaagtgtccttcccagaa
gtttcaagctttcttctgtcccttagaccagaggagtccctaaggagagatactttgtta
tggacagagctttgcagttggttgcaagagaatgacaggtgcttcaggaagtctgtaacc
tctgattttggacatcaggagacaccatcattatgtgaatatgtgcacagtcttgtggga
gagtaccttaagacacctgcatctgaaagagaaaattgctttatgcctgactggtttgaa
gctaagcttgtctcaacaatgattctgttggctgctgacgtggagcagatgaagaataaa
tacagtggaaaaagcaacatagagtggactgaactagaggctttcttgaaccctcttctg
gatgtcttgatgaaacttggcagtaatgcttacataccaacactgaaaacagataaaagc
cttcagcttctcttgaagttattgcagacccgttcgttaaaatgttccaatacgcaagat
gatgaagtgttgttctttatctggaaatctcttgtgacacctgtggagagtattcttgaa
tttattctccgacggcttgctaccaacgagttaagcactgttggcgacttggatcgttgt
gatatgtacttggctttaattccagagatagtgaatttggccttgaaaggcaacttgaag
aaaatgccatctatcaagaatttcctttcatccttgataaatgcatctattcgtaatctt
caggagagaaattctgaaaaggagccgaaggtgaaggaacaaatcagaaaagtagctagc
atggcttcacttgcagctgtatgtgacataatggatggagagctagaagtgcacctgaaa
tctctgccttctgtggatgctctgaagaaattcatttccttttctcaattgaatgaagta
ttaaagaagccatcttatattgaagaaaaaaatagcatatgcgaagaaacatcatctcaa
ggatgggggaaaattgttgcacgctatgttcgtgaccagtggatttgtcgccgttttgtt
tttaattcatttgcaacactggctcaagagtatgaagaaacttcagtaatgtcactgtct
acagctgaaaggtcaaaagaaatcctacagtctgcattagaagccctatctattcttcct
tcagaccaagtgtcacctgtgtttgactgcatgaaagtccttgttcccaagcttctggac
tcatcagaggctctctgcatagaagcatttgatttggcttggaaaattatatcctctttg
agcaatacacagctaatattttgggccaatctaaaagcttttgttcggttcatctttgat
actgaggttctagctgttgctgcaagtgcaaaaggtcaagcatataacaaaataaaagag
ataattttcaaccttattgatctgtccactacaaagactggagtcttcaatgtagtcctt
agtcactgttgtcagtcctggatatttcccactgttgatgagagaagtgccttcacaaat
gctttcttaaatgctggaaattatagtgaacttatcactgaggcttgtgtctttggaact
gtatttaggaaagatcaaagacacattcaggatgtgcatgccttcatagaaaatctcgga
gaaaaatgtgcagcaaatgttgttgcagaaagtacaaatcgagatgatcactacgttcgc
atttgtgctgttaaatttctgtgcttgttggatggatcaaatatcttgcataagacattt
atggaagacattttcatcaaactactcgataaggatgaactggtatcaaaatctagaaca
cgctattatgcaaactctttgcagcacagaattaaaaaccgggtgtggcagacacttcta
gttcttctcccaaagcttaaccagaattttttgtgtggaactcttgacagagtgtttcag
gctggattcagtaataatcaggcatctgtgaaatacttcatagaatggattgttatcttg
agtctacataaatatccccaattccttgataaattctgggattgcttttgctatgatgaa
gaaaagcttaaaaaaagcatctgcacatttttatcagtgttggcccactttgacatcatt
cttcaaaatacctcagagaagaagccagctttgaagaaagctctcatcgttgttctgcag
tggtgtttcagccataatttcagcgtccgactttatgcattaatcgcccttaaaaaaatc
tggggtatgtgcagaatgctgcacgtagaagaatttgaagctctgacaccagttattgaa
tctagccttcaacaagtggaaaacatgcatggcacagggaatgccagaaggaactggcag
cgaatccaagatcacttcttctttgcaacatttcatcctgttgaggattatagtctagag
acaatattttacattcttccccgccttgcggaactggctgaggatgaatggatctccctc
tctaaatttgacagattcactgacattcctttgccagcagcatttcagtggtgccattcc
cgaacagaacttcgtgatctgaaaccaagtgactggtctcagcaagacatgggttcacat
ttggctgaagcagacagccagacagagtggactgatgttcagaagaagattataccctgg
aagaacagcactcctagtttagacttggaaacagcatttcaggatcgtgctgttaaactt
ggcaaatcaaacagcagattgattgtggtggcttcacttattgataaaccaaccaattta
ggaggtttatgtcgtacaagtgaaatatttggggcatctgcactagttgttggcagtctt
cattatatacaggataagcagtttcagcatctgagtgtttctgcagagcagtggctcccc
cttgttgaggtaaaaccatctcagcttgttgattatttacagcagaaaaaaacagaaggc
tacactattattggtgtggagcaaacagctaaaagttttgatcttacagaatattgcttc
ccagagaaatcactattattgctgggaaatgaacacgaaggaatcccagccaacctgatt
caccatctggatgtctgtgtggaaattcctcagcagggcattatccggtcactcaatgtt
catgtgagcggagctctgctgatctgggagtacacaagacaacaagtgatcaagcaaaaa
caacaacaataa
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