Lonchura striata domestica (Bengalese finch): 110470675
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Entry
110470675 CDS
T05897
Name
(RefSeq) laminin subunit beta-2-like
KO
K06243
laminin, beta 2
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr04510
Focal adhesion
lsr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110470675
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110470675
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
LAMININ_IV_B
Laminin_N
Laminin_I
Nup49_C
GAS
LXG
BRE1
Motif
Other DBs
NCBI-GeneID:
110470675
NCBI-ProteinID:
XP_031361842
LinkDB
All DBs
Position
12:11747699..11758438
Genome browser
AA seq
1645 aa
AA seq
DB search
MVWDRMDLEGLWVWPPSHLDVLQTFRPAAMLVERSADFGRTWKVYRYFAYNCSKLFPGIP
SHPQGLVDEVLCDQRYSEIEPSSHGEVIFKVLDPSIPVADPYSPDIQDLLRVTNLRVNLT
KLHTLGDNLLDSRREVLHKYYYAVDELVLRGSCFCHGHAAHCAPAPGAPTPSVPGMVHGR
CVCEHHTQGLNCERCEDFYHDLPWRPAEGSSTNACRRCDCNEHSRRCHFDMAVFLATGNT
SGAVCDDCQHNTMGRHCHLCKPFYYRHPRSDIRSPTACAPCDCDPAGSLDGGACDGHTDV
ALGMIAGQCRCKENVAGPRCDRCQHGAYGLSHGDPQGCQPCRCDPRGTVAGSSPCDPISG
DCYCKRFVAGRSCSQCVPEFWGLSYDLGGCRPCACDFGGAYNNRCSMEDGACPCRPHIMG
RQCDQVQPGFFCAPLDYYTYEAEQATGHGHSHPQLPGAIRVEVPQDCLDYDTKEPPGRKG
RSRHQHSPLRAPQPPVPSRRSRQQPPKLDVEEVVRDSAGRMVTWTGLGFARVRDGAGLTF
RVDNVPYPMDYELLLRYEPESAEDWEAVVSVSSRVLPTSSRCGNLLPSEQMYVLLSRPFC
FEPSTPYEVTMRLQRAGVTQRHPGAFILIDSLVLLPRVSELPGFHGAEAAARQEELERYQ
CLEVFRMAPPHPLAEACARLVCSVSALMHGGALPCQCDPQGSRSSECQVQGGQCECKPHV
IGRRCDHCAPGSYGFGPLGCSPCTCSPEGSVSQLCDKVSGQCRCQPGTVGRQCDQCQPGH
WGFPACRPCQCNGHAEECDPRTGTCLRCRDHTSGRHCERCQDGYYGNPVLGSGQQCRPCP
CPGYPGTRHYHGNSCHADDETHHIICLCAPGYAGPRCDRCSPGYFGAPEMEGGECRPCQC
NNNIDASDPEGCDPRTGQCLRCLYHTAGPRCAQCQPGYYGSALQRSCRLSCTVSMALSLQ
VTGQCQCRPGFGGRVCSQCQEHHWGDPEQECRACECEPLGAESPQCEQDNGQCRCRLGFG
GLRCDRCQRGYQEPFPHCSPCHPCFGHWDLAVGSLREGLQRLGAQVQALREGGSALPLSP
RRLRELEEALGHVEQLMGEGDSPGSPLLDGLPRQLDGTRMELDNFWKHLQELEQHLDQLA
QADMQHHDRLAELSRELGRLNQTTSDLQILLGTVAAAGFSESYRSILASVEASRQAEVVA
NGTAGELSNARMMQRTTERALQQRGDIFRRGTAAARKSLRETQKQVVGLSIARVNEKICG
APGDQSCKHASCGGALCRDSAGMRHCGGTGCAGALPISARALSSARNASQQLEVALGQLG
VVAQKMQEVQELARGARSRAEEALGRSQAARSHAEKATAQLRDFIRRIKAFLAEEGADPA
SIELVARQVLNISLPSSPGQIQELLWEMRESISQLEGVDAVLNSTAEGLAVARDLLAQGQ
EARERAEGVRDELVGTQQALEVARTQAMTAGSTLQSARDAIQVAENRAREAERRLQVLDR
KESQAQRRLRELAQRITTLQEHSRDARHMAQQAKDGAQRATTTSGTLSQDLAQVTQRYVV
LKNRVGTLDRVSGGVLQRVSQLMAEAQDLLDKASNSKRKLEDLEQRFGANERTMAAKVTR
LQALEQQVTGLLQEIRERANAYATC
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atggtatgggacaggatggatctggaggggctgtgggtctggcccccatcccatctggat
gtcctgcagaccttccgccctgcggccatgctggtggagcgctcagccgactttgggcgc
acctggaaggtgtaccgctacttcgcctacaactgctccaagctcttccctggaatcccc
agccacccccaggggcttgtggatgaggtgctatgtgaccagcgctactctgagatcgag
ccatccagccatggggaggtcatcttcaaggtgttggatccctccatccccgtagcagat
ccctacagcccagacatccaggacctgcttcgtgtcaccaacctgcgggtgaacctcacc
aagctgcacacgctgggggacaacctgctggactcacggcgggaggtgctgcacaagtac
tactatgctgtggatgaactggtgctgcgtgggagctgcttctgccacggccacgctgcc
cactgtgccccagcaccgggtgccccaacaccctctgtccccggcatggtccacgggcgc
tgtgtctgtgagcaccacacgcaggggctgaactgcgagcgctgcgaggatttctaccac
gacctgccctggcgcccggccgagggctccagcaccaacgcctgtcgccgctgtgactgc
aatgagcactcacggcggtgccactttgacatggctgtgttcctggccacggggaacacc
agtggggctgtgtgtgatgactgccagcacaacaccatgggccgccactgccacctctgc
aagcccttctactaccggcaccctcgctccgacatccggtcccccactgcctgtgcccca
tgtgattgtgacccggcaggctcgctggatggaggtgcctgcgatgggcacacggacgtg
gcgctgggcatgattgcggggcagtgccgctgcaaggagaacgtggccggtccccgctgt
gaccgctgccagcacggcgcctacggcctcagccatggcgacccacagggctgtcagcca
tgcaggtgtgacccgcggggtacggtggcaggcagctccccgtgtgaccccatcagtggg
gactgctactgcaaacgctttgtggctgggcgctcctgcagccaatgtgtgcccgagttc
tggggtctgagctacgacttggggggctgccggccctgcgcttgcgacttcgggggagcc
tacaacaaccggtgctccatggaggatggggcatgtccctgccgtccccacatcatgggg
cggcagtgtgaccaggtacaacccggcttcttctgtgcccccctcgactactacacctat
gaggccgagcaggccactggccatggccacagccaccctcagctcccgggtgccattcgg
gtggaggtgccccaggactgcctggactatgacaccaaggagccgccggggcggaaggga
cgctcacggcaccagcacagccccctccgtgctccccagccccctgtcccctcgcgccgc
agccgccagcagccccccaagctggacgtggaggaggtggtgcgggacagtgccgggcgc
atggtgacgtggacaggcttggggttcgcccgggtgcgggacggggctggcctgaccttc
cgcgtggacaacgtgccctaccccatggactacgagctgctgctgcgctatgagcccgag
tcagccgaggactgggaggccgtggtcagtgtcagctcccgggtgctgcccaccagctct
cgctgtgggaacctgctgccctccgagcagatgtacgtgctgctgtcccggcccttctgc
ttcgagcccagcaccccttatgaggtgaccatgcggcttcagcgggctggtgtcacccag
cgccaccctggcgccttcatcctcattgactcgttggtgctcctgccacgggtgtcagaa
ttgccagggttccacggggcagaggcagcagcacgccaggaggagctggagcggtaccag
tgcctggaggtgtttcgcatggccccccctcatcccctggccgaggcctgtgcccgcctg
gtctgcagcgtctcagccctgatgcacggcggggcactgccctgccagtgcgacccacag
ggctcccgcagcagcgagtgccaggtgcaaggcgggcagtgtgagtgcaagccccacgtc
attggccgacgctgtgaccactgtgccccaggcagctacggctttgggcccctgggatgc
agcccctgcacctgctcccccgagggctccgtgtcccagctgtgtgacaaagtgagtggg
cagtgccggtgccagcccggcaccgtgggccggcagtgtgaccagtgccagcccggccac
tggggcttccctgcctgccggccctgccagtgcaacgggcacgccgaggagtgcgacccc
cggacgggcacctgcctgcgctgccgcgaccacacgagcgggcggcattgtgagaggtgc
caggatggttactatgggaaccctgtgctgggctcaggacagcagtgccggccctgcccc
tgccctggctaccctggcacacggcattaccacgggaattcctgccatgcggacgatgag
acacaccacatcatctgcctctgcgcccctggatacgcggggccccgctgtgaccgctgc
tcccctggttacttcggggctccggagatggaggggggggagtgccggccctgccagtgc
aacaacaacatcgacgccagcgacccggagggctgcgacccccgcacgggacagtgcctg
cgctgcctgtaccacaccgccgggccacgctgcgcccagtgtcagccgggctactacggc
agtgccctgcagcgcagctgccggctgagctgcacagtgagcatggcactgtcgctgcag
gtgacagggcagtgccagtgccggcctggcttcgggggtcgtgtctgttcccagtgccag
gagcaccactggggagaccccgagcaggagtgcagagcctgtgagtgtgagccgctgggt
gctgagagcccgcagtgcgagcaggacaacgggcagtgccggtgccggctgggattcggg
gggctgcgctgtgaccgctgccagcggggctaccaggagcccttcccccactgctcaccc
tgccacccttgcttcgggcactgggacctggccgtgggcagcctgcgggaagggctccag
cgccttggggcacaggtgcaggcactgagggaggggggatctgcactcccactcagcccc
cgtcgcctgcgagagctggaggaggctctggggcacgtggaacagctgatgggagaggga
gacagccctggtagtcccctcctcgatggactgcccaggcagctggatggcaccaggatg
gagctggacaatttctggaagcacctccaagagttggagcaacatctcgaccagctggca
caggcagatatgcagcaccatgaccggctagctgagctgagccgtgagctgggacgtctc
aaccaaaccacctccgacctccaaatcctcctcggcactgtagcggctgccggattcagc
gagtcttaccgcagcatcctggcatcggtggaggcctcgcggcaggcagaggtggtggcc
aatggcacagctggcgagctaagtaacgcgcggatgatgcagcggacaactgagcgggca
ctgcagcagcggggtgatattttccgccgtggcacagccgcagcccggaaatccttgcgg
gagacacaaaaacaggtggtgggactcagcattgccagggttaacgagaagatttgtggg
gcacctggagaccagagctgcaagcacgcgtcttgtggaggcgccttgtgccgagacagt
gcagggatgaggcactgcggcggcactgggtgtgcaggggcactgcctatctcagctcga
gccctgagcagtgcccgtaatgcctcacagcagctggaggtggcattagggcagctgggt
gttgtggcacagaagatgcaggaggtgcaggagctggcacggggggcacgcagcagggca
gaggaggcgctggggcgctctcaggctgcccgcagccatgcagagaaggcgacggcccag
ctccgggacttcatccgccgaatcaaggccttcctggcagaagagggagctgacccagcc
agcatcgagctggtggcccgtcaggtgctgaacatctccctgcccagcagccctggacag
atccaggagctgctgtgggagatgcgggagagcatcagccagctagagggggtggacgca
gttctcaacagcaccgcggaggggctggctgtggcacgggatctgctggcacagggacag
gaggccagggagcgagcagaaggcgtaagggatgagctggtggggacacagcaggcactg
gaggtggcacggacacaggcgatgacagcagggagcaccctgcagagtgccagggatgcc
atccaggtggctgagaacagagccagggaggcggagcgcaggctgcaggtgctggacagg
aaggagtcgcaggcgcagaggcggctgcgggaactggcacagcgcatcaccaccctgcag
gaacacagcagggatgctcgccacatggcccagcaagccaaggatggggcacagcgtgcc
accaccacctcggggacgcttagccaggacctcgcacaggtaacacagcgttatgtggtg
ctgaagaaccgggtgggcacgctggacagggtgtctggtggggtcctgcagcgtgtgtcg
cagctgatggcagaggcccaagacctcctggataaggccagcaacagcaagaggaagctg
gaagacctggagcagcgctttggggccaatgaacggacaatggcagcaaaggtgacacga
ctgcaggctttggagcagcaggtcaccgggctgttgcaggagatccgggagagggccaac
gcttacgccacctgctag
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