Lonchura striata domestica (Bengalese finch): 110477639
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Entry
110477639 CDS
T05897
Symbol
NOTCH1
Name
(RefSeq) neurogenic locus notch homolog protein 1 isoform X1
KO
K02599
Notch 1
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Pathway
lsr04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
110477639 (NOTCH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
EGF_2
Ank
Notch
NOD
NODP
Ank_4
Ank_5
Ank_3
EGF_3
cEGF
Motif
Other DBs
NCBI-GeneID:
110477639
NCBI-ProteinID:
XP_021399273
LinkDB
All DBs
Position
17:8870197..8912550
Genome browser
AA seq
2550 aa
AA seq
DB search
MERLLAPGLLVLLLPALTRGLRCSQLAESCLNGGKCETFPNGTEVCQCSGAYVGERCQLP
NPCLSSPCKNAGTCTALVRGSTVDYSCACRLGFSDELCLTPRDNVCLSNPCRNGGTCDLL
TLSEYKCRCPPGWSGKTCQQADPCASNPCANGGQCVPFEAHYVCRCTAGFHGANCKQDVN
ECNISPPVCKNGGSCTNEVGTYQCSCKPAYTGQNCEHLYVPCNPSPCQNGGTCRQIGDTT
YDCTCLPGFTGQNCEENINDCPGNNCKNGGTCVDGVNTYNCQCPPEWTGQYCTEDVDECQ
LMPNACQNGGTCHNNHGGYNCVCVNGWTGEDCSENIDDCAMAACFHGATCHDRVASFYCE
CPHGRTGLLCHLDDACISNPCNEGSNCDTNPVNGKAICTCPSGYMGPACNQDVDECSLGA
NPCEHAGKCINTQGSFQCQCLQGYSGPRCEIDVNECLSNPCQNDATCLDQIGEFQCICMP
GYEGVYCEINTDECASSPCLHNGNCLDKINEFHCECPTGFNGHLCQFDIDECASTPCKNG
AKCVDGPNTYSCECTEGFTGAHCEIDIDECDPDPCHYGTCKDGIASFTCLCQPGYTGHRC
DININECQSQPCKNGGTCQDRNNAYNCICLKGTTGPNCEINLDDCASNPCDYGKCIDKIN
GYECTCEPGYTGHMCNINIDECASNPCHNGGTCKDGINGFTCLCPEGFHDPKCLSEVNEC
NSNPCIHGKCHDGLNGYKCDCDPGWSGTNCDINNNECESNPCMNGGTCKDMTSGYICTCR
EGFSGPNCQTNINECASNPCLNQGTCIDDVAGYTCNCLLPYTGATCEDVLAPCAGSPCKN
GGECQESEDYKSFSCSCPPGWQGQTCEIDINECVKSPCRNGATCQNTNGSYRCACRTGFS
GRNCDTDIDDCKPNPCHNGGSCSDGIGTFFCECLAGFRGPKCEEDINECASNPCKNGANC
TDCVNSYTCTCPSGFSGIHCENNTPDCTESSCFNGGTCVDGINTFTCVCPPGFTGSYCEH
NINECDSKPCLNGGTCQDSYGTYKCTCPQGYTGLNCQNLVRWCDSSPCKNGGKCWQTSNL
YHCECNSGWTGLYCDVPSVSCEVAAKQQGIDVAHLCRNSGLCVDTGNTHFCRCQAGYTGS
YCEEQVDECSPNPCQNGATCTDYLGGYSCECVAGYHGVNCSEEINECLSHPCQNGGTCID
LINTYKCSCPRGTQGVHCEINVDDCSPFFDPVTLGPKCFNNGKCKDRVGGYSCICPPGFV
GERCEGDVNECLSNPCDARGTQNCVQRVNDYKCECRPGYAGRRCDTVVDGCKGKPCRNGG
TCAVASNTGRGFICKCPPGFVGATCENDSRTCGNLHCLNGGTCISIHKSSKCMCTPAFTG
PECQYPASSPCTSNPCYNGGTCEFSSDASPFYRCNCPANFNGLNCHILDFDFQGGIGQDI
IPPKIEEKCEIAVCAGYAGNKICDGKCNNHACGWDGGDCSLNFNDPWKNCSQSLQCWKYF
NDGKCDSQCNNAGCLYDGFDCQKYEGQCNPLYDQYCKDHFSDGHCDQGCNNFECEWDGLD
CANNMPEKLADGTLVVVVLITPENLKNNSFNFLRELSRVLHTNVVFKKNPKGEYMIFPYY
GNEEELKKHYIKRSTEDWSDMSSAVINKVKSSLYSRAGRRQKRELDQMDIRGSIVYLEID
NRQCIQSSSQCFQSATDVAAFLGALASLGNLNIPYKIEAVKSETAEPTKNSQLYPMYVVG
AALVLLAFIGLGVLVNRKRRREHGQLWFPEGFKVTESSKKKRREPLGEDSVGLKPLKNAS
DGTLMDDNQNEWGDEETLDTKKFRFEEQAMLPDTDDQTDHRQWTQQHLDAADLRISSMAP
TPPQGEIDADCMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEDDAPAVISDFIYQGASL
HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL
IRNRATDLDARMHDGTTPLILAARLAVEGMLDDLINCHADVNAVDDLGKSALHWAAAVNN
VEAAMVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI
AQERMHHDIVRLLDEYNLVRSPTLHNGPLGAPTLSPPLCSPNSYIGNLKPAVQGKKARKP
STKGLSCNGKDAKDLKARRKKSQDGKGCLLDNSGVLSPVDSLESPHGYLSDVASPPLMTS
PFQQSPSMPLNHLPGMPDAHLSINHLNMAGKQDMAMGSSSRMGFDSVPPRLSHLPVSSPS
TGMSSAPMSFSVGSGASLNGQCDWLSRLQNGMVQSQYNPLRGNLQPGAHQQPQNLQHGMM
TSLHNGLPTTSLSQMMSYQAMPNTRLASQPHLMQSQQLQQMQQQQQQQQQQLQQPNLQQP
PQQQPQQPPQQHHNPSGSNGSGHLGQNFLGTELSQAELQPVSGSAMAVHTILPQDSQMLP
TSLPSSLAQPMTTTQFLTPPSQHSYSSPMDNTPSHQLQVPDHPFLTPSPESPDQWSSSSP
HSNVSDWSEGISSPPTSMQSQMGHIPEAFK
NT seq
7653 nt
NT seq
+upstream
nt +downstream
nt
atggagcggctcctggcgcccggcctcctggtgctcctgctgcccgccctgacgcgaggt
ttacggtgctcgcagcttgccgaatcctgcctcaacgggggcaagtgtgaaacttttccc
aacgggacggaggtgtgccagtgtagcggtgcctacgtgggcgagcggtgccagctgccc
aacccctgcctgagctccccctgcaagaacgcgggcacctgcacggcgctggtgcgcggc
agcaccgtggattacagctgcgcctgccgcctgggcttcagcgacgagctgtgcctgacg
ccccgcgacaacgtctgcctcagcaacccctgccgcaacggcggcacctgcgacctgctg
accctcagcgagtacaagtgccgctgcccgcccggctggtcaggcaaaacctgccagcag
gccgacccctgtgcctccaacccctgtgccaacgggggccagtgcgtgcccttcgaagcc
cactacgtctgccgctgcaccgccggcttccacggcgccaactgcaagcaggacgtcaac
gagtgcaacatctccccgcccgtctgcaagaacgggggcagctgcaccaacgaggtgggc
acctaccagtgctcctgcaagccagcctacaccgggcagaactgcgagcacctctacgtg
ccctgcaacccctcgccctgccagaacgggggcacctgccgccagatcggggacaccacc
tacgactgcacctgcctgccagggttcacgggtcagaactgtgaggagaacatcaacgac
tgtcccggcaacaactgcaagaatgggggcacctgcgtggacggcgtcaacacctacaac
tgccagtgcccacctgagtggacaggtcagtactgcactgaggatgtggacgagtgccag
ctgatgcccaacgcctgccagaacgggggcacctgccacaacaaccacggcggctacaac
tgtgtctgtgtcaacggctggacgggcgaggactgcagcgagaacatcgatgactgcgcc
atggccgcctgcttccacggggccacctgccacgaccgggtggcctccttctactgcgag
tgtccccacggccgcacaggtttgctgtgccacctggacgacgcctgcatcagcaacccc
tgcaacgagggctccaactgcgacaccaaccctgtcaatggcaaagccatctgcacgtgt
ccttcggggtacatggggccggcctgcaaccaggacgtggacgagtgctcgctgggagcc
aacccgtgtgagcacgcaggaaagtgcatcaacactcaagggtccttccagtgccagtgt
ctgcagggctactcaggccctcgctgtgagattgatgtcaatgagtgcctctccaacccc
tgccagaatgatgccacctgcctggaccagattggggagttccagtgcatctgcatgccc
gggtacgagggggtttactgcgagatcaacacggacgagtgtgccagcagcccctgcctg
cacaacggcaactgcctggacaagatcaacgagttccactgcgagtgccccactggcttc
aacgggcacctgtgccagtttgacatcgacgagtgtgccagcaccccctgcaagaacggt
gccaagtgcgtggatggccccaacacctacagctgcgagtgcactgaaggtttcacaggt
gctcactgcgagatcgacatcgatgagtgtgaccctgacccgtgccactacgggacctgc
aaggacggcatcgcctccttcacctgcctctgccagcccggctacacgggccaccgctgc
gacatcaacatcaacgagtgccagagccagccctgcaaaaatgggggcacctgccaggac
aggaacaacgcctacaactgcatctgcctcaaagggaccacaggccccaactgtgagatc
aacctggatgattgtgccagcaacccctgtgactacggcaagtgcattgacaagatcaat
ggctacgagtgcacctgcgagccggggtacacagggcacatgtgcaacatcaacatcgac
gagtgtgccagcaacccctgccacaacgggggcacgtgcaaggatggcatcaacggcttc
acctgcctctgccccgagggcttccacgaccccaagtgcctgtccgaagtgaacgagtgc
aacagcaacccctgcatccacgggaaatgccacgatggattgaatggctacaagtgtgac
tgtgaccctggctggagtgggacaaactgtgacattaacaacaatgagtgtgaatccaat
ccctgcatgaacggtggcacctgcaaggacatgaccagtggctacatctgcacctgcagg
gagggcttcagcggccccaactgccagaccaatatcaacgaatgtgcttccaacccctgc
ctgaaccagggcacgtgcatcgatgatgttgctggctacacctgcaactgcctcctgccc
tacacaggagccacctgtgaggatgtgctggccccctgtgctggcagcccctgcaagaac
ggtggtgagtgccaggagtcagaggactacaagagcttctcctgcagttgcccccctggc
tggcaaggtcagacctgtgagattgacatcaatgagtgtgtgaagagcccctgcaggaat
ggggccacgtgccagaacaccaacgggagctaccgctgtgcctgccggaccggcttctcc
ggccgcaactgcgacaccgacatcgacgactgcaagcccaatccatgccacaacggtggc
tcctgctcggatggcattggcacgttcttctgtgagtgcctggctggcttccgtgggccc
aagtgcgaggaggacatcaatgagtgtgccagcaacccctgcaagaacggggccaactgc
accgactgcgtcaacagctacacctgcacctgcccctccggcttcagcggcatccactgc
gagaacaacacccctgactgcacagagagctcctgcttcaacggtggcacgtgcgtggat
ggcatcaacaccttcacctgtgtctgcccgcccggcttcacgggcagctactgcgagcac
aacatcaacgagtgtgactccaagccgtgcctgaacgggggcacgtgtcaggacagctac
ggcacgtacaagtgcacctgtccccagggatacaccgggctcaactgccagaacctggtg
cgttggtgtgactcctcgccctgcaaaaacggaggcaagtgctggcagaccagcaacctg
taccactgcgagtgcaacagcggctggacagggctctactgcgatgtccccagcgtgtcc
tgcgaggtggctgccaagcagcaaggtatcgatgtagcacacctctgcaggaactcgggg
ctctgtgttgacactggcaacactcatttctgccgctgccaagccggctacaccggcagc
tactgcgaggagcaggtggatgaatgctccccaaacccctgccagaacggagccacctgc
acagactacctgggaggctactcctgcgagtgtgtggctggttatcatggagttaactgc
tcagaggagatcaatgagtgcttgtcccacccatgccagaatggaggaacctgcatcgat
ctcatcaatacctacaaatgctcctgccccagaggaactcaaggggtgcactgtgagatc
aatgtggatgactgcagccctttctttgatccggtcaccctggggcccaagtgctttaac
aatggcaagtgcaaggatcgggtaggtggctacagctgcatctgcccccctggctttgta
ggggagcgctgcgagggagatgtcaacgagtgcctgtccaacccctgcgacgcccgcggc
acccagaactgcgtgcagcgggtcaacgactacaaatgcgagtgcagacctggctatgca
ggccgtcgctgcgacaccgtggtggacggctgcaaaggcaaaccctgcaggaatggggga
acctgtgctgttgccagcaacactggccgtggcttcatctgcaagtgccccccgggattc
gtgggtgccacctgcgagaacgactcccgcacctgtggcaacctgcactgcctgaacggt
ggcacctgcatctccatccacaagagctccaagtgcatgtgcacgccggccttcacgggc
cccgagtgccagtacccggccagcagcccctgcacctccaacccctgctacaacgggggc
acctgcgagttctccagcgacgcctcccccttctaccgctgcaactgtcccgccaacttc
aacggcctcaactgccacatcctcgacttcgacttccagggcggcatcgggcaggacatc
atcccccccaagatcgaggagaagtgcgagatcgccgtgtgcgcgggctacgccggcaac
aagatctgcgacgggaaatgcaacaaccacgcctgcggctgggacgggggcgactgctcc
ctcaacttcaacgacccctggaagaactgctcccagtctctgcagtgctggaagtatttc
aacgatggcaagtgtgactctcagtgcaataatgctggctgcctctacgatgggtttgac
tgccagaaatacgaggggcagtgcaaccctctgtatgaccagtactgcaaagatcacttc
tcggatggtcactgcgaccagggctgcaacaattttgagtgcgagtgggatggtctggac
tgtgcaaacaacatgccagagaagctggccgatggcacactggtggtggtggtcctcatc
acccccgagaacctgaagaacaactccttcaacttcctgcgggagctgagccgtgtgctg
cacaccaacgtggtcttcaagaagaaccccaagggggagtatatgatcttcccatactac
ggcaacgaggaggagctgaaaaaacattacatcaagaggtccacagaggactggtcagat
atgtccagtgctgtcatcaacaaagtgaagagcagcctctactcccgggctggcaggagg
cagaagagggagctcgaccagatggacatcagaggatccattgtctacttggaaattgat
aaccgccagtgcatccagtcgtcttcccagtgcttccagagtgccaccgatgtggcagca
ttcctgggagccttggcctcccttggcaacctgaacataccctacaaaatagaagctgtc
aaaagtgagacagccgagcccacgaagaactcccagctgtatcctatgtacgtggtgggg
gctgcgctggtcttgctcgccttcatcgggctgggggtgctggtgaaccgcaagcgccgc
agggagcatgggcagctctggttccctgaaggcttcaaagtgacagagtccagcaagaag
aagcgacgggaacccctcggggaggattctgttgggctgaaacccctcaaaaatgcttcg
gacggcacgctgatggatgacaaccagaatgagtggggtgatgaggagaccttggacacc
aagaagttcaggtttgaggagcaggcgatgctgccagacacggatgaccagacggatcac
aggcagtggacgcagcagcacctggacgccgctgacctgcgcatctcctccatggccccg
acgcctccacagggggaaatcgatgctgactgcatggatgtcaacgtcagagggccggac
ggcttcaccccgctcatgatcgcctcgtgcagcggaggagggctggagaccggcaacagc
gaggaggaggacgacgctcccgccgtcatctcggacttcatctaccagggcgccagcctg
cacaaccagaccgaccgcacgggcgagaccgcgctgcacctggccgccaggtactcccgc
tcggacgctgccaagcgcctgctggaggccagcgccgacgccaacatccaggacaacatg
ggccgcacgccgctgcacgccgccgtctccgccgacgcgcagggcgtcttccagatcctg
attaggaacagggcaacagacctggatgcccgcatgcacgacgggaccactcccctgatc
ctggctgctcgtttggctgtggaggggatgctggatgatctcatcaactgccacgctgac
gtcaatgccgtggatgatttaggcaagtcagccctgcactgggcagctgctgtgaataat
gtggaagctgcaatggtcctcctgaagaatggtgccaataaggacatgcagaataataag
gaggagaccccactgttcctggcagccagagaagggagctacgaaaccgccaaggtgctg
ctggaccattttgccaaccgggacatcacggaccacatggaccggctgccgcgggacatc
gcccaggagcgcatgcaccacgacatcgtgcgcctgctggacgaatacaacctggtgcgg
agccccacgctgcacaacggccccctgggggcacccaccctgtcccccccgctctgctcc
cccaacagctacatcggcaacctcaaacccgccgtgcagggcaagaaggccaggaagccg
agcaccaaggggctgagctgcaacggcaaggatgccaaagacctcaaagcccggaggaaa
aagtcacaggatgggaaagggtgtctgctggacaactcgggtgtgttgtcacctgtggac
tccctggagtcgccgcacgggtacctgtcggacgtggcctctcccccgctgatgacctct
ccgttccagcagtcgccttccatgcctctgaaccacctgccgggcatgcccgatgcccac
ctgagcatcaaccacctcaacatggcgggcaagcaggatatggccatgggcagctccagc
aggatgggcttcgactcggtgcccccgcgcctgtcccacctgcccgtgtccagccccagc
acggggatgagcagtgcccccatgagcttctcggtgggcagcggggccagcctgaacggg
cagtgtgactggctcagccggctgcagaacgggatggtgcagagccagtacaaccccctg
agaggcaacctgcagcccggggcgcaccagcagccccaaaacctacagcacggcatgatg
acctcgctgcacaacgggctgcccaccaccagcttgtcgcagatgatgagctaccaggcc
atgcccaacacccggctggcgtcccagcctcacctgatgcagagccagcagctccagcag
atgcagcagcagcagcagcagcagcagcagcagctccagcagcccaacctgcagcagccg
ccgcagcagcagccgcagcagccgccgcagcagcaccacaaccccagcggctccaacggg
agcggccacctgggccagaatttcctgggtacggagctgagccaggccgagctgcagccg
gtgagcggcagcgccatggccgtgcacaccatcctgccgcaggattcccagatgctgccc
acctccctgccctcctccctcgcccagcccatgaccaccacgcagttcctgacccctcct
tcccagcacagttattcctcccccatggacaacacgcccagccaccagctccaggtgccc
gaccaccctttcctcacgccgtcgccggagtcgccggaccagtggtccagctcctctcct
cactccaacgtgtccgactggtccgagggcatctccagccctcccacgagtatgcagtca
cagatgggacacatccccgaggccttcaagtaa
DBGET
integrated database retrieval system
