Lonchura striata domestica (Bengalese finch): 110483462
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Entry
110483462 CDS
T05897
Symbol
CDKAL1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsr03016
]
110483462 (CDKAL1)
Enzymes [BR:
lsr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
110483462 (CDKAL1)
Transfer RNA biogenesis [BR:
lsr03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
110483462 (CDKAL1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM
Motif
Other DBs
NCBI-GeneID:
110483462
NCBI-ProteinID:
XP_021409080
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All DBs
Position
2:69644868..70020331
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AA seq
582 aa
AA seq
DB search
MPAACESVLEDIEDIVSAEDLKPHDRQFVRRNIFPKVRKRNSQKNIQTDDEPPSDSIIPG
VQKIWIRTWGCSHNNSDGEYMAGQLAAYGYTITDNSAEADLWLLNSCTVKNPAEDHFRNS
IKKAQEGKKKVVLAGCVPQAQPRQEYLKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK
KDNGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVDRA
KQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHL
EEMAKILNHPRVYAFLHIPVQSASDSVLMDMKREYCVADFKQVVDFLKEKVPGITIATDI
ICGFPGETDEDFQETMKLVELYRFPSLFINQFYPRPGTPAAKMPQVPAAVKKQRTKDLSQ
LFHSYSPYDHKVGERQRVLVTEESFDSNYYVAHNPFYEQVLVPKDPLLMGKMVEVNIYEA
GKHFMKGQPVSDARIHTASISRPLAKGEVSGLTEEFRRSVQNGTNWKAQPSVEIPVKTRL
SSWMALQLPWQQEGGGVKILSVSLALLAVLVMFYYGGMKTEL
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgcctgtgagtcagtgcttgaggatatcgaagacatcgtgtcagcagaagat
ttgaagccacacgatcgacagtttgtgagaaggaatatttttcccaaagtgcgaaaacgc
aactcccagaaaaacattcagacagatgatgagcccccaagtgacagcattattcctggt
gttcagaaaatctggattcgtacatggggatgttctcacaataattcagatggtgaatat
atggctggacagctggctgcatatggatacacaattacagacaactctgctgaagcagat
ttatggttgctgaacagttgtacagtaaaaaatcctgctgaggaccatttcagaaactca
atcaagaaagcccaagaagggaagaagaaagttgttctagcaggttgtgtaccacaagcc
caacctcgccaggagtacctgaaaggcttgagtattataggggttcagcagatagatcgt
gtagtagaagttgtggaggaaactataaaaggtcattctgtgagactactgggtcagaaa
aaggataatggaaaacgtttggggggagcacgactggatttgccaaagattaggaagaat
ccacttatagaaataatttccatcaatacagggtgtctcaatgcatgtacctactgtaaa
acaaagcatgccagaggagatctagcaagttatcctattgaagaactggtggacagagcc
aagcagtcttttcaagagggtgtttgtgagatatggctgaccagtgaagacacaggggct
tatggcagagacattggcacagacctccccacgcttctgtggaagctggttgaagttatt
cctgagggagctatgctgaggcttggcatgacaaaccctccctatattttagagcatctg
gaggaaatggccaagattctcaatcatccaagagtatatgcttttctgcacataccagtc
cagtcagcctctgacagtgtgctcatggacatgaaaagagaatactgtgtggcagacttc
aaacaagtagtggatttccttaaagaaaaagtgcctggaataacaattgctacagacatc
atttgtggttttccaggagagacagatgaagattttcaagaaactatgaaacttgtagaa
ctgtataggtttccaagcttgtttattaatcaattctacccacgtccaggaaccccagct
gcaaaaatgcctcaagttccagctgcagtgaaaaaacagagaacgaaggatctgtcccag
ctatttcattcatacagtccatatgatcataaggttggtgagaggcagagagttctggta
acagaagaatcctttgactccaattactatgttgctcacaatcctttctatgagcaggtt
cttgtgccaaaggatcctctgttgatgggtaagatggtagaagtgaatatttatgaagct
gggaaacattttatgaaggggcagccagtatcagatgccagaattcatactgcatccatc
agcagaccgttagcaaaaggagaagtttctggtttaacagaggagttcagacgttcagtg
cagaacggcacaaactggaaagcacagccttctgttgagatcccagtgaaaacacggctc
agctcctggatggctttgcagctgccatggcaacaagagggaggtggagtgaagatcctg
tctgtcagcctggctctgctggcagttcttgttatgttttactatggaggaatgaaaaca
gaactgtga
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