Lactuca sativa (garden lettuce): 111878626
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Entry
111878626 CDS
T05352
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111878626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111878626
Enzymes [BR:
lsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111878626
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
111878626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PNGaseA
Ku_PK_bind
Motif
Other DBs
NCBI-GeneID:
111878626
NCBI-ProteinID:
XP_023730902
LinkDB
All DBs
Position
9:32566325..32573459
Genome browser
AA seq
1650 aa
AA seq
DB search
MAQTTEGASEIVEGVRFSFMTDEEVRKHSVLKITNPILLDSVGRPMPGGLYDPLLGPMDE
QAPCKSCGQQSFQCPGHCGHIDLVSPVYNPLLFDMLFTLIRKTCFFCRHFRAGKEEVNVC
TSKLMKIANGDVSGAKDYVINNSDSKDIDLEDNDFSHGSSSTLHSGSQSESPEQTQHDFW
TSVQYIEARNLLKEFLANPSKSCKNCEAKNPKISKPTFGSFRMEMTVADAEKNYMKGYKL
GSIQDEELEDGEDDKTSEVINVNELSEDERVDTAGTNSFSPSSSNKKKIKKKKSKVPSDF
KELKNNYTGTLLPSRVISIVKDLWENEADLCAYLCNIQQERLTGSFKTTGYTMFFLEALL
VPPTKFRPAAKAGDAVMENPQTVLLGKVLQSNISLGNAHINKLEGSKIADRWRDLQQSVN
VLFDSKTATNPNLKNANTGICQLLEKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIG
VPPYFALRLTYPERVTPWNVVKLRDSIINGSDIHPGATHYADKVSTVRLPQSKKMRISIS
RKLPSSRGTAIQSKNSSDYDFEGKIVYRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGE
KTLRMHYANCSSYNADFDGDEMNVHLPQDEISRSEAYNIVNANNQYIVPTRGDTVRGLIQ
DHIVSSVLLTMKDTFLNRDQFNQLLYASGVFNGGNSRHGKTSFTDKGCFVKPVLPAVWKP
KPLWTGKQVITALLNHLTRGYTPCIVDNKVKIPEQYFQGKEDKNKKNKKRKKEVVELKNE
IDETRLLIWKNELVSGVIDKAQFGKYGLVHTVQELYGPDIAGLLLGAFSRLFTNYLQFHG
FTCGLDDLMVSPDCDKEMKMELEGEDVGEKVHRKFVNLENQKTGTRELQLETEKIIRSNG
ATASASLDNLMQTELRDKGSMISKKWLPKGLMKPFPQNCISLMTISGAKGSSVNFQQISF
LLGQQELEGKRVPRMVSGKTLPSFSPWDFTARAGGYIIDRFLTGLRPQEYYFHCMAGREG
LVDTAVKTSRSGYLQRCLIKNLESLKVSYDYTVRDADGSIVQFYYGEDGVDVHQTSFLNN
VQVLKANREIVCQKLNEPLEFNSYIQELPQGIQDKVKSYKQKGKKEKNDLLMLVRQKYLS
SLAQPGEPVGVIAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTP
IITCPLLQDKSMEDAERLVEKVKKLTVAELMQSVQVSKLPLVIHNNRPCRIYKLMVKLKQ
PRHVSLHNCQETLRNVFLRALEDAIERHVVLLSRINGIKSVRSSKTERSGEDDDASVDDG
GDHVDGDDDDDDDDDRDETADDLGSEYNKRKRQNTDSVEYEDGSEEEDEEEEASSDLDEN
GGADVANADMATGTDDETEEQEQEQEQEQGDADKASTKSTEEFVERKFDRSIFVEVKDLT
LEVHFRFTNEPEILLAEVAQKAAKKVYIKGSGKLDQCQPVKYSVNVKQVCWNQKNMETAK
DKMCALQASGVELPAFWDMEDELDVDHVYSNNIHTMLNTYGVEAARTGIILEMKNVFGSY
GVEIDYRHLSLIADHMTHSGGYRPMSRFGSISESVSPFLKMSFETASKFIVEAASHGMMD
NLETPTARICLGLPVKVGTGSMELMQKLDI
NT seq
4953 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccaccgagggtgcgtctgagattgttgagggtgtaaggttcagtttcatg
actgatgaagaggtcaggaagcacagtgttttaaagattacaaaccctattttacttgac
agtgttggaagaccaatgccaggaggattgtatgatcctttgttgggcccaatggatgaa
caagcaccctgtaagtcatgtgggcagcagtcatttcaatgcccagggcattgtggtcac
attgatcttgtttcaccagtatacaatccattgctttttgatatgcttttcactcttata
agaaaaacatgcttcttttgtcgccattttagagcaggaaaagaagaggtcaatgtttgt
acgtctaaactaatgaagatagcaaacggtgatgtttctggggctaaagattatgttatc
aataattcggattccaaagacattgatctagaggacaatgattttagccatggttcaagt
tccacattacattctggttcacaaagtgaaagccctgaacaaacacaacatgatttttgg
acatctgttcaatatatagaagcaaggaatcttttgaaagaatttttggctaaccctagc
aagtcttgtaaaaattgtgaagctaaaaacccaaagatcagtaaacctacatttggatcg
tttcgtatggaaatgactgttgctgatgctgaaaagaactatatgaaaggttataaattg
ggaagtatacaagatgaggagttagaagatggggaagatgacaagacttctgaggttata
aatgtcaatgaactatcagaagatgaaagagttgacactgctgggaccaattcattttca
ccatcttcatctaacaaaaagaaaataaagaagaaaaagtcaaaagtgccctctgacttc
aaagagctgaagaacaactacacaggcactcttttaccatctagggtcataagtatagtg
aaagatttgtgggaaaatgaagctgatctttgtgcatatctatgcaatattcagcaagaa
aggctgactggatcttttaaaactactggttacaccatgttctttttagaggccttgctt
gtcccccctacaaaatttcgtcctgctgccaaagcaggtgatgctgtgatggagaatcca
caaacagtgttactaggaaaggtgctacagtcaaatatatcattgggaaatgctcatatc
aacaaacttgaaggttcaaagattgctgatcgttggcgggacctacaacagtctgtaaat
gttctatttgacagcaaaactgccacaaatccaaatctgaaaaatgcaaatactgggata
tgccagttgcttgagaagaaagagggaatctttcgccaaaaaatgatgggcaaaagagtc
aattatgcatgtcgatctgtcatttcacctgatccttatttagctgttaatgaaatcggt
gttcctccttattttgccctaaggttgacctaccccgagagagtgactccttggaatgtt
gtgaaactaagagattccattattaatggttctgatattcatcctggagctactcattat
gctgataaggtgtcaactgtgagactacctcaaagcaaaaagatgcgtatttctatatct
agaaagttaccttcttctagaggcacagctatacaatccaaaaacagcagtgactatgac
ttcgagggtaaaatagtctatcgccatttacaagatggagatattgtccttgtgaatcgt
cagcctacacttcacaagcccagtattatggctcatgtagttcgagtattaaaaggagag
aaaactcttcgtatgcattatgcaaattgcagttcctacaatgctgattttgatggagat
gaaatgaatgttcatttaccacaagatgaaatctcacgttctgaagcttataacattgtg
aatgcaaacaatcagtatatagttccaacaaggggagatactgttagaggcttaattcaa
gatcatattgtcagttctgttcttctcacaatgaaagatacttttttaaaccgtgaccag
ttcaatcaacttctttatgcttctggtgtgtttaatggaggtaattcaagacatggtaaa
acttcatttactgataaaggctgctttgtgaagcctgttcttccagctgtctggaagcca
aagcctctttggacaggaaaacaggtgataacagcgttgttgaatcatctgactagaggt
tatacgccttgtattgttgataacaaggtgaagatcccagaacagtattttcaaggaaaa
gaggataaaaataaaaaaaataaaaaaagaaagaaagaggttgtggaattgaaaaatgaa
attgatgaaacaagattattgatttggaaaaatgagcttgtgagtggtgtgatagataaa
gctcaatttggaaaatatggtttggttcatacagtacaagagctatatggaccagacatt
gcagggcttttacttggagcttttagtcgattattcactaattatttacagttccatgga
tttacatgtggtttagatgatctaatggtgtcaccagattgtgacaaggaaatgaagatg
gaacttgaaggtgaagatgtaggtgaaaaagttcatagaaaatttgtcaacttggaaaat
caaaaaacagggacacgagagttgcaattggaaactgagaaaataataagaagcaatgga
gcaacagcgtctgcaagtttagataacctcatgcaaacagagctaagagataaaggttca
atgatcagcaaaaaatggttaccaaaaggactgatgaaacccttcccacaaaactgcatt
tctctcatgaccatcagtggtgccaagggtagttcggtaaatttccaacaaatatcattt
ttactcggtcaacaagaattggaagggaaacgtgtgccccgaatggtttccgggaagact
ttacccagcttttcaccttgggatttcaccgctcgggcaggcggttatatcattgaccgg
tttttgaccgggctccgcccacaagaatactattttcactgcatggctgggcgtgaaggg
ttggtggatacagctgttaaaacttctagaagtgggtatttacaaaggtgtcttattaag
aatcttgaaagcttaaaagtttcatatgattacacggttcgtgatgctgatggatccatt
gttcagttttattatggtgaagatggtgtcgatgtgcatcaaactagctttttaaataat
gttcaagttctcaaagctaatcgagaaattgtttgtcaaaagctaaacgaaccacttgaa
ttcaattcttacattcaagaattaccacaagggattcaagataaagttaaaagttataaa
cagaagggtaaaaaagagaaaaatgatttgttgatgttggtaaggcaaaagtatttgtct
agtcttgcacagcctggggagccggttggtgtcattgctggtcaatctgttggtgaacct
tccactcagatgacattgaatacttttcatcttgcgggacgtggtgagatgaatgtgaca
cttggtattccacgtttacaggagatattaatgacagctgctgctaacatcaagactcct
atcataacatgtccattgcttcaagacaaatcaatggaagatgcggagagacttgtggag
aaagtgaagaagcttactgttgcagaacttatgcagagcgtacaagtttcaaagttacca
cttgtgattcataataatcgtccgtgtaggatctataagcttatggtgaagctgaaacaa
ccgagacatgtgtcactacataactgtcaggaaacacttaggaatgtttttctaagggca
ttggaggatgccattgaaagacacgtggttttgctgtctagaattaatggaatcaaaagt
gttcggagttcaaaaacagaacgttcaggggaagatgatgatgcttctgttgatgatggt
ggtgatcatgttgatggtgatgatgatgatgacgatgatgatgacagagatgaaacagct
gatgatcttggatctgagtataataaaagaaaacgacaaaatacagattcagttgaatac
gaagatggttctgaagaggaagatgaagaagaggaagcatcctcggatcttgatgaaaat
ggaggtgctgatgtggctaatgctgatatggcaaccggaactgacgacgaaacagaagaa
caagaacaagaacaagaacaagaacaaggtgatgcggataaagcaagcactaaatccact
gaagaatttgtggagagaaaattcgataggtcaatattcgttgaagtcaaagacttgact
cttgaagtccatttcagattcacaaatgaaccagagattttgcttgcagaggttgcacag
aaggctgcgaagaaggtatacatcaaaggatctggaaaactggaccagtgccagcctgtc
aagtacagtgtaaacgtgaaacaagtctgttggaatcagaaaaacatggagacagcaaaa
gacaaaatgtgtgcattgcaggcttcaggagttgagcttcctgcattttgggatatggaa
gatgagcttgatgtggaccatgtttattccaacaacatacacaccatgctcaacacctat
ggagttgaagctgcaagaacagggattattttggagatgaagaatgtgtttgggagttat
ggtgtggagattgattacaggcatttaagtctcattgctgatcacatgactcattccgga
gggtatcgcccaatgagtagattcgggagcatatcggaatccgtgtctcccttcttgaag
atgtcatttgagactgcaagtaagtttattgttgaggcggcttctcatgggatgatggat
aatttggagacaccaaccgctagaatttgtcttggtttgcctgttaaagttggtactggc
tccatggagttgatgcagaaacttgatatataa
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integrated database retrieval system
