Lactuca sativa (garden lettuce): 111916783
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Entry
111916783 CDS
T05352
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03020
RNA polymerase
lsv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111916783
09124 Replication and repair
03420 Nucleotide excision repair
111916783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111916783
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111916783
Enzymes [BR:
lsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111916783
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111916783
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111916783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
111916783
NCBI-ProteinID:
XP_052624650
LinkDB
All DBs
Position
1:14877947..14885442
Genome browser
AA seq
1819 aa
AA seq
DB search
MDIRFPHSPAEVAKVRLVQFGILSPDEIRQMSVVHIEHGETTERGKPKVAGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK
FKQAQKIRNPKNRLKKILDACKSKTKCDGGDEIDSQNQDTDEPVKKSRGGCGAQQPKITI
EGMKMVAEYKLQKKKSDDSEQLPEPAERKQQLSAEKVLSVLKRVSDEDCILLGLNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLEFGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPTILKPRPLWTGKQVFNLIIPKQIN
LIRTAAWHSETETGHMTPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMETINETISKAKNEVKELIRTAHDKQL
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKIKKKEFDRLFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRVQ
LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLRVVP
GDDQLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVSKTKDRAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDENEGFKP
ENEWMLDTEGVNLLAVMCHEDVDALRSTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
LRGVTENIMLGQLAPIGTGDCALLLNEEMLQQAIDVQLPSYMDGLDIGMTPGRSPITPFH
DGAMSPTNYLLSPNLRLSPINDAQFSPYVGGMGFSPTSSPGYSPSSPGYSPSSPGYSPTS
PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPTYSPTSPSYSPTSPSYSPTSPSYS
PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPYSPTS
PNYSPTSPSYSPTSPSYSPSSPTYSPTSPYNAGVSPDFSPGSPQYSPSAGYSPSAPGYSP
SSTSQYTPHMSNKDDTSKP
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggatatacggttcccgcactctccggcagaggttgcaaaagtccggctggttcagttc
ggcatcctcagtcctgatgaaattagacaaatgtctgttgtgcatatagagcatggtgaa
acgacagaaagagggaagcccaaggtagcgggacttagtgacccgaggcttgggactatt
gatcggaaaatgaaatgtgagacatgtatggctaatatggccgagtgccctggtcatttt
gggcatctcgagcttgccaaacctatgtttcatattggatttatgaagacagtactcagc
attatgcgatgcgtgtgcttcaattgctcaaaaatacttgcggatgaggaggatcacaaa
ttcaagcaagcccaaaaaattagaaacccaaaaaacaggcttaagaagattctagatgcg
tgcaagagcaaaactaaatgtgatggtggtgatgagattgattctcaaaaccaggatacg
gatgaaccagttaagaagagccggggtggttgtggtgcacagcaaccaaagatcaccatt
gaaggtatgaaaatggttgcagaatacaagcttcagaagaagaaaagtgatgactcagaa
cagcttcctgagccggctgaaagaaagcaacagctttctgcagaaaaagttctgagtgta
ttgaagcgggttagtgatgaagactgcatattgttgggtttgaaccccaaatatgctcgt
ccagattggatgatcctgcaggttcttccaatacctccacccccagtcagaccatctgtg
atgatggatacatctgctcgtagtgaggatgacttgactcatcaactggccatgatcatc
agacacaatgagaatcttaggaggcaagaaaggaatggagctcctgcacacataatctct
gaatttgcacagctacttcagttccatgttgctacatattttgacaatgagcttcctggt
caaccaagggctacacaacggtcagggcgtcctattaaatccatatgcagtaggctcaag
gcaaaggagggtcggatcagaggcaatctgatggggaagcgtgttgacttttcagcacgt
acagtcatcactccagatccaaccattaacattgatcaacttggagtaccatggagtatt
gctttgaatcttacttatcctgagactgttactccttataacatagaaaggctgaaggag
cttgttgagtatggtcctcatcctccccctggtaaaactggagccaagtatattattagg
gacgatggtcaaaggcttgatcttcgttacttgaagaaaagtagtgatcatcatctggag
tttggatacaaggtggagagacacttgaatgatggagattttgtgcttttcaatcgacaa
ccgagtctgcataagatgtctataatggggcataggatcaagatcatgccatactccacc
ttccggttaaatctatctgtcacttcaccatacaatgctgattttgatggagatgaaatg
aacatgcatgtgcctcagtcatttgaaacaagagcagaggttctggagctgatgatggtg
cctaaatgcatagtatcacctcaggccaatcggccagttatgggtatcgtgcaggataca
ctcttaggttgtcgtaaagtcaccaagagagatacttttattgaaaaggatgttttcatg
aacatattgatgtggtgggaggattttgatggaaaagtaccaacacctaccattctgaaa
cctagacctttatggactgggaaacaagtgttcaatctcatcattccaaagcagatcaat
ctgattaggacagcagcttggcattcggaaactgaaaccgggcatatgacaccgggtgat
actcaagttcgaatagagaagggagaggttataactggcaccctttgtaaaaaaaccctc
ggtgcatctacagggagtttgatacatgtcatctgggaggaagttggtccagatgctgcc
cgcaagtttcttggacatacccagtggcttgttaactactggcttttgcaacaagggttc
agcattggcattggagacaccattgctgatgcagcaaccatggaaaccatcaatgaaact
atttcaaaagccaagaatgaggtgaaagaacttattagaactgctcatgataaacagctg
gagccagagcctggtcgaactatgatggagtcatttgaaaacagagtgaatcaggtcctg
aacaaggctcgtgatgacgcaggaagtagtgctcagaaaagtttatcagaaagcaacaat
ctcaaggctatggtgacagcaggttccaaaggaagtttcatcaatatatctcaaatgact
gcttgtgtgggacaacagaacgttgagggtaaacgaatcccgtatgggttcatagatcga
acgcttcctcatttcacaaaagatgataatggacctgaaagtcgtgggtttgtggagaac
tcttatcttcgaggtttgacaccacaagagttcttctttcacgccatgggaggtagagaa
ggtctgattgatactgctgtgaaaacatcagaaactggttatattcagaggagactggtg
aaagctatggaagacatcatggtgaagtatgatggtactgtgaggaactctcttggtgat
gttatccagtttctttatggagaagatggaatggatgcggtttggatcgagtctcagaaa
cttgattctttgaaaatcaagaaaaaggagtttgatcggcttttcaagtatgaaattgat
gatgaaaactggaatccaagttacatgcttccagaacatgtggaggatttgaaaacaatc
cgggagttccggaacgtgttcgatgccgaagtacaaaaactagaagccgatcgtgtccag
cttggaactgaaattgccaccactggtgacaacacatggcccatgcctgtaaacctcaaa
aggttgatttggaatgcacaaaagacattcaaggttgatttgagaaggccatctgatatg
catcctatggaaatcgtggaagctgttgataagcttcaagaaaggctgcgtgttgtcccg
ggtgatgatcagttgagtattgaagcccaaaagaacgccacccttttcttcaatattctc
cttcgtagtacttttgctagcaagagggtgttgagtgagtacaggttgacccgtgaggcg
tttgaatgggttatcggtgagatagagtccagattcctgcagtcgcttgttgcacccggg
gaaatgattgggtgtgttgcggcccagtctatcggtgaacctgcgacacagatgacccta
aacaccttccattatgctggtgtgagtgctaagaatgttaccctgggtgtaccccgattg
agggagattatcaatgttgctaagaagatcaaaaccccttcgttgtcagtctatttgaag
cctgaggttagtaaaacaaaagatcgggccaaaaacgtgcagtgtgctttggagtacacc
acactacggagtgtgactcaagccactgaagtgtggtatgacccggatcccatgagtaca
atcatcgaagaagatgttgactttgtcaaatcttactatgaaatgcccgatgaagagatc
gacccggataagatatctccctggttgctccgtattgagttgaatcgtgagatgatggtt
gacaagaagctgagcatggcggatattgctgaaaagatcaatcttgaattcgacgatgat
ttgacatgtatatttaacgatgacaatgctgaaaagttgattttgagaatacgtatcatg
aatgatgaagccccgaaaggcgaaatgcaagacgaatcggctgaggacgatgtcttcctt
aaaaagattgaaagtaatatgttgacagaaatggcgttgcgtgggattcccgatatcaac
aaggtgtttatcaaatcagggaaagtcaacaagtttgatgagaacgaagggttcaagccc
gaaaacgaatggatgttggatacagaaggtgtgaatcttttagccgtgatgtgtcatgaa
gacgtggatgcgttgagatccaccagtaatcatctgattgaagtgattgaggttcttggg
attgaagctgttagaaggtcgttgctggacgaacttcgggtggtgatttcgtttgatggg
tcgtatgtgaattaccgacatttggctattttatgtgataccatgacgtaccgtgggcat
cttatggctatcacacgacacgggatcaacagaaatgatacgggccccatgatgaggtgt
tcgtttgaagaaacggttgatattcttcttgatgctgcggtttatgcggaaaccgattat
ctccggggtgttactgagaacataatgctggggcagcttgctcctattgggaccggagac
tgtgctttgttgttgaacgaagagatgttacagcaagcgattgatgttcagcttccgagt
tacatggacgggctggatatcgggatgacacctgggcggtcccccattactcctttccac
gatggtgcaatgtctcccacgaattatctgttgagcccaaatctacggctgtctccgatt
aacgatgcacagttttcgccttatgttggtgggatgggtttttcgccaacttcatcaccg
ggctatagcccgtcgtcccccgggtacagcccatcatctccgggatacagccccacctcg
cctggttatagcccaacctcaccgggctatagccctacatctccgggttacagtcccacc
tctccaacttacagcccaagttcacccggttatagcccaacaagtcctacctactcaccc
acttcacctagctactcccctacctcaccaagctactcacccacatcacctagctacagc
cctacatcgccagcttacagcccgacctctccggcttacagcccgacctctccttcctac
agcccgacatcaccatcctacagcccaacctcaccctcctacagcccaacctcaccctct
tacagcccgacctctccttcctacagcccaacatcaccatcctacagcccgacctcccct
tcctacagcccaacctcccctgcttacagcccaacttcacctgggtacagtcctacttcc
ccaagctacagtcctacttctccaagttacagtcccacctcaccaagttacaacccttca
tccgctaagtacagcccctcgttggcttattctcctagtagtccatacagccctacatcc
cccaactacagccccacatcgccatcatattctccaacatctccgtcttactctccttcc
agccctacatatagtcccaccagtccttacaacgccggtgtgagtccagacttcagccca
ggctcaccacaatacagccctagtgctgggtactcgcctagtgctcctgggtattcgcca
tcatcaacaagccagtatactcctcatatgagcaacaaggacgatacatcaaagccataa
DBGET
integrated database retrieval system
