Lysinibacillus sp. CD3-6: FH508_0002575
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Entry
FH508_0002575 CDS
T08381
Symbol
rpoE
Name
(GenBank) DNA-directed RNA polymerase subunit delta
KO
K03048
DNA-directed RNA polymerase subunit delta
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FH508_0002575 (rpoE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyc03021
]
FH508_0002575 (rpoE)
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0002575 (rpoE)
Transcription machinery [BR:
lyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FH508_0002575 (rpoE)
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FH508_0002575 (rpoE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HARE-HTH
TPR_20
Motif
Other DBs
NCBI-ProteinID:
UED80796
LinkDB
All DBs
Position
559047..559586
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AA seq
179 aa
AA seq
DB search
MNFREMTKEQLAEESLINLAYAILTEKRASVSFNDLLTIIKELVGYSDEDIKSRLLQFYT
DMNVDGRFLFNQETGWGLREWFKVEQIEEETAPSVKTHKKKSKATLDEDDELEEDLEEDD
IDFDEDYEEFVEEDEEIDEEKEDIDFDDEEDIEDIEDEIDEDFIEEEEEEFDEEEEEEV
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttcgtgaaatgacaaaggaacaattagcggaagaatcgttaattaacttagct
tatgcaattttaactgaaaaacgtgcttcagtgtcatttaatgacctgcttacaattatt
aaagagcttgttggttatagtgatgaagatattaaatcacgcctactacaattctacact
gatatgaatgttgatggacgtttcttatttaatcaagaaactggttggggcttacgcgaa
tggttcaaagtagaacaaatcgaagaagaaacagctccatcagtgaaaacgcacaagaaa
aaatctaaagctacacttgatgaagacgatgaattagaagaagatttagaagaagatgac
attgacttcgacgaagattatgaagagtttgttgaagaagatgaagaaatcgatgaagaa
aaagaagatattgacttcgacgacgaagaagatattgaagacatcgaggatgaaattgat
gaagatttcattgaagaagaggaagaagagttcgatgaagaagaagaggaagaagtgtaa
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